def __init__(self, prefix='', project_id=None):
super(BoldMonitorForm, self).__init__(prefix, project_id)
self.period = ScalarField(Bold.period, self)
self.equation_choices = get_ui_name_to_monitor_equation_dict()
self.equation = SimpleSelectField(self.equation_choices,
self,
name='equation',
required=True,
label='Equation')
def __init__(self, prefix=''):
super(MultiplicativeNoiseForm, self).__init__(prefix)
self.nsig = ArrayField(Multiplicative.nsig, self)
self.equation_choices = get_ui_name_to_equation_dict()
self.equation = SimpleSelectField(self.equation_choices,
self,
name='equation',
required=True,
label='Equation')
def __init__(self, prefix=''):
super(IntegratorStochasticForm, self).__init__(prefix)
# TODO: show select box with Noise types
# self.noise = FormField(MultiplicativeNoiseForm, self, name='noise', label='Noise')
self.noise_choices = get_ui_name_to_noise_dict()
self.noise = SimpleSelectField(self.noise_choices,
self,
name='noise',
required=True,
label='Noise')
def __init__(self, prefix='', project_id=None):
super(CSVConnectivityImporterForm, self).__init__(prefix, project_id)
self.weights = UploadField('.csv', self, name='weights', label='Weights file (csv)', required=True)
self.weights_delimiter = SimpleSelectField(DELIMITER_OPTIONS, self, name='weights_delimiter', required=True,
label='Field delimiter : ', default=list(DELIMITER_OPTIONS)[0])
self.tracts = UploadField('.csv', self, name='tracts', label='Tracts file (csv)', required=True)
self.tracts_delimiter = SimpleSelectField(DELIMITER_OPTIONS, self, name='tracts_delimiter', required=True,
label='Field delimiter : ', default=list(DELIMITER_OPTIONS)[0])
self.input_data = DataTypeSelectField(ConnectivityIndex, self, name='input_data', required=True,
label='Reference Connectivity Matrix (for node labels, 3d positions etc.)')
def __init__(self,
variables_of_interest_indexes,
prefix='',
project_id=None):
super(BoldMonitorForm, self).__init__(variables_of_interest_indexes,
prefix, project_id)
self.period = ScalarField(Bold.period, self)
self.hrf_kernel_choices = get_ui_name_to_monitor_equation_dict()
self.hrf_kernel = SimpleSelectField(self.hrf_kernel_choices,
self,
name='hrf_kernel',
required=True,
label='Equation')
def __init__(self, choices, prefix='', project_id=None):
super(SimulatorPSEConfigurationFragment,
self).__init__(prefix, project_id)
self.pse_param1 = SimpleSelectField(choices,
form=self,
name='pse_param1',
required=True,
label="PSE param1")
self.pse_param1.template = "form_fields/select_field.html"
self.pse_param2 = SimpleSelectField(choices,
form=self,
name='pse_param2',
label="PSE param2")
self.pse_param2.template = "form_fields/select_field.html"
def __init__(self, prefix='', project_id=None):
super(GIFTISurfaceImporterForm, self).__init__(prefix, project_id)
surface_types = ALL_SURFACES_SELECTION.copy()
surface_types['Specified in the file metadata'] = OPTION_READ_METADATA
self.file_type = SimpleSelectField(surface_types,
self,
name='file_type',
required=True,
label='Specify file type : ',
default=list(surface_types)[0])
self.data_file = UploadField(
'.gii',
self,
name='data_file',
required=True,
label='Please select a .gii (LH if cortex)')
self.data_file_part2 = UploadField(
'.gii',
self,
name='data_file_part2',
label="Optionally select 2'nd .gii (RH if cortex)")
self.should_center = SimpleBoolField(
self,
name='should_center',
default=False,
label='Center surface using vertex means along axes')
def __init__(self, prefix='', project_id=None):
super(SimulatorModelFragment, self).__init__(prefix, project_id)
self.model_choices = get_ui_name_to_model()
self.model = SimpleSelectField(choices=self.model_choices, form=self, name='model', required=True,
label=Simulator.model.label, doc=Simulator.model.doc)
self.model.template = "form_fields/select_field.html"
def __init__(self, prefix='', project_id=None, is_surface_simulation=False):
super(SimulatorMonitorFragment, self).__init__(prefix, project_id)
self.monitor_choices = get_ui_name_to_monitor_dict(is_surface_simulation)
self.monitor = SimpleSelectField(choices=self.monitor_choices, form=self, name='monitor', required=True,
label=Simulator.monitors.label, doc=Simulator.monitors.doc)
self.monitor.template = "form_fields/select_field.html"
def __init__(self, prefix='', project_id=None):
super(ZIPSurfaceImporterForm, self).__init__(prefix, project_id)
self.uploaded = UploadField('application/zip', self, name='uploaded', required=True, label='Surface file (zip)')
self.surface_type = SimpleSelectField(ALL_SURFACES_SELECTION, self, name='surface_type', required=True,
label='Surface type', default=list(ALL_SURFACES_SELECTION)[0])
self.zero_based_triangles = SimpleBoolField(self, name='zero_based_triangles', default=True,
label='Zero based triangles')
self.should_center = SimpleBoolField(self, name='should_center',
label='Center surface using vertex means along axes')
def __init__(self, prefix='', project_id=None):
super(SimulatorIntegratorFragment, self).__init__(prefix, project_id)
self.integrator_choices = get_ui_name_to_integrator_dict()
self.integrator = SimpleSelectField(choices=self.integrator_choices, form=self, name='integrator',
required=True,
label=Simulator.integrator.label, doc=Simulator.integrator.doc)
self.integrator.template = "form_fields/select_field.html"
def __init__(self, prefix='', project_id=None):
super(ObjSurfaceImporterForm, self).__init__(prefix, project_id)
self.surface_type = SimpleSelectField(ALL_SURFACES_SELECTION, self, name='surface_type', required=True,
label='Specify file type :', default=list(ALL_SURFACES_SELECTION)[0])
self.data_file = UploadField('.obj', self, name='data_file', required=True,
label='Please select file to import')
self.should_center = SimpleBoolField(self, name='should_center', default=False,
label='Center surface using vertex means along axes')
def __init__(self, model_params, equation_choices, prefix=''):
super(SurfaceModelParametersForm, self).__init__(prefix)
self.model_param = SimpleSelectField(model_params,
self,
name='model_param',
required=True,
label='Model parameter')
self.model_param.template = 'form_fields/select_field.html'
self.equation = SimpleSelectField(equation_choices,
self,
name='equation',
required=True,
label='Equation',
default=self.default_equation)
self.equation_params = FormField(get_form_for_equation(
self.default_equation),
self,
name=self.NAME_EQATION_PARAMS_DIV)
def __init__(self, prefix='', project_id=None):
super(SimulatorMonitorFragment, self).__init__(prefix, project_id)
self.monitor_choices = get_ui_name_to_monitor_dict()
self.monitor = SimpleSelectField(choices=self.monitor_choices,
form=self,
name='monitor',
required=True,
label=Simulator.monitors.label,
doc=Simulator.monitors.doc)
self.monitor.template = "select_field.jinja2"
def __init__(self, prefix='', project_id=None):
super(SimulatorAdapterForm, self).__init__(prefix, project_id)
self.connectivity = DataTypeSelectField(self.get_required_datatype(), self, name=self.get_input_name(),
required=True, label="Connectivity",
doc=Simulator.connectivity.doc,
conditions=self.get_filters())
self.coupling_choices = get_ui_name_to_coupling_dict()
self.coupling = SimpleSelectField(choices=self.coupling_choices, form=self, name='coupling', required=True,
label="Coupling", doc=Simulator.coupling.doc)
self.coupling.template = 'form_fields/select_field.html'
self.conduction_speed = FloatField(Simulator.conduction_speed, self)
self.ordered_fields = (self.connectivity, self.conduction_speed, self.coupling)
self.range_params = [Simulator.connectivity, Simulator.conduction_speed]
class BoldMonitorForm(MonitorForm):
def __init__(self, prefix='', project_id=None):
super(BoldMonitorForm, self).__init__(prefix, project_id)
self.period = ScalarField(Bold.period, self)
self.equation_choices = get_ui_name_to_monitor_equation_dict()
self.equation = SimpleSelectField(self.equation_choices,
self,
name='equation',
required=True,
label='Equation')
def fill_trait(self, datatype):
super(BoldMonitorForm, self).fill_trait(datatype)
datatype.period = self.period.data
datatype.equation = self.equation.data()
class MultiplicativeNoiseForm(NoiseForm):
def __init__(self, prefix=''):
super(MultiplicativeNoiseForm, self).__init__(prefix)
self.nsig = ArrayField(Multiplicative.nsig, self)
self.equation_choices = get_ui_name_to_equation_dict()
self.equation = SimpleSelectField(self.equation_choices,
self,
name='equation',
required=True,
label='Equation')
def fill_trait(self, datatype):
super(MultiplicativeNoiseForm, self).fill_trait(datatype)
datatype.nsig = self.nsig.data
datatype.b = self.equation.data()
def __init__(self, prefix='', project_id=None):
super(SensorsImporterForm, self).__init__(prefix, project_id)
self.sensors_file = UploadField(
'text/plain, .bz2',
self,
name='sensors_file',
required=True,
label='Please upload sensors file (txt or bz2 format)',
doc='Expected a text/bz2 file containing sensor measurements.')
self.sensors_type = SimpleSelectField(self.options,
self,
name='sensors_type',
required=True,
label='Sensors type: ',
default=list(self.options)[0])
class IntegratorStochasticForm(IntegratorForm):
template = 'form_fields/select_field.html'
def __init__(self, prefix=''):
super(IntegratorStochasticForm, self).__init__(prefix)
# TODO: show select box with Noise types
# self.noise = FormField(MultiplicativeNoiseForm, self, name='noise', label='Noise')
self.noise_choices = get_ui_name_to_noise_dict()
self.noise = SimpleSelectField(self.noise_choices,
self,
name='noise',
required=True,
label='Noise')
def fill_trait(self, datatype):
super(IntegratorStochasticForm, self).fill_trait(datatype)
datatype.noise = self.noise.data()
def fill_from_trait(self, trait):
# type: (Integrator) -> None
self.noise.data = trait.noise.__class__
class BoldMonitorForm(MonitorForm):
def __init__(self,
variables_of_interest_indexes,
prefix='',
project_id=None):
super(BoldMonitorForm, self).__init__(variables_of_interest_indexes,
prefix, project_id)
self.period = ScalarField(Bold.period, self)
self.hrf_kernel_choices = get_ui_name_to_monitor_equation_dict()
self.hrf_kernel = SimpleSelectField(self.hrf_kernel_choices,
self,
name='hrf_kernel',
required=True,
label='Equation')
def fill_trait(self, datatype):
super(BoldMonitorForm, self).fill_trait(datatype)
datatype.period = self.period.data
datatype.hrf_kernel = self.hrf_kernel.data()
def fill_from_trait(self, trait):
super(BoldMonitorForm, self).fill_from_trait(trait)
self.hrf_kernel.data = trait.hrf_kernel.__class__