Esempio n. 1
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    def test_get_bit_length_from_plateau_length(self):
        self.assertEqual(
            AutoInterpretation.get_bit_length_from_plateau_lengths([]), 0)
        self.assertEqual(
            AutoInterpretation.get_bit_length_from_plateau_lengths([42]), 42)
        plateau_lengths = [
            2, 1, 2, 73, 1, 26, 100, 40, 1, 59, 100, 47, 1, 52, 67, 1, 10, 1,
            21, 33, 1, 66, 100, 5, 1, 3, 1, 48, 1, 27, 1, 8
        ]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(
            plateau_lengths)
        self.assertEqual(
            AutoInterpretation.get_bit_length_from_plateau_lengths(
                merged_lengths), 100)

        plateau_lengths = [
            1, 292, 331, 606, 647, 286, 645, 291, 334, 601, 339, 601, 338, 602,
            337, 603, 338, 604, 336, 605, 337, 600, 338, 605, 646
        ]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(
            plateau_lengths)
        self.assertEqual(
            AutoInterpretation.get_bit_length_from_plateau_lengths(
                merged_lengths), 300)

        plateau_lengths = [
            3, 8, 8, 8, 8, 8, 8, 8, 8, 16, 8, 8, 16, 32, 8, 8, 8, 8, 8, 24, 8,
            24, 8, 24, 8, 24, 8, 24, 16, 16, 24, 8
        ]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(
            plateau_lengths)
        self.assertEqual(
            AutoInterpretation.get_bit_length_from_plateau_lengths(
                merged_lengths), 8)
Esempio n. 2
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    def test_get_bit_length_from_plateau_length(self):
        self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths([]), 0)
        self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths([42]), 42)
        plateau_lengths = [2, 1, 2, 73, 1, 26, 100, 40, 1, 59, 100, 47, 1, 52, 67, 1, 10, 1, 21, 33, 1, 66, 100, 5, 1, 3, 1, 48, 1, 27, 1, 8]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(plateau_lengths)
        self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths(merged_lengths), 100)


        plateau_lengths = [1, 292, 331, 606, 647, 286, 645, 291, 334, 601, 339, 601, 338, 602, 337, 603, 338, 604, 336, 605, 337, 600, 338, 605, 646]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(plateau_lengths)
        self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths(merged_lengths), 300)

        plateau_lengths = [3, 8, 8, 8, 8, 8, 8, 8, 8, 16, 8, 8, 16, 32, 8, 8, 8, 8, 8, 24, 8, 24, 8, 24, 8, 24, 8, 24, 16, 16, 24, 8]
        merged_lengths = AutoInterpretation.merge_plateau_lengths(plateau_lengths)
        self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths(merged_lengths), 8)
Esempio n. 3
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 def test_get_bit_length_from_merged_plateau_lengths(self):
     merged_lengths = [
         40, 40, 40, 40, 40, 30, 50, 30, 90, 40, 40, 80, 160, 30, 50, 30
     ]
     self.assertEqual(
         AutoInterpretation.get_bit_length_from_plateau_lengths(
             merged_lengths), 40)
Esempio n. 4
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 def test_get_bit_length_from_merged_plateau_lengths(self):
     merged_lengths = np.array([40, 40, 40, 40, 40, 30, 50, 30, 90, 40, 40, 80, 160, 30, 50, 30], dtype=np.uint64)
     self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths(merged_lengths), 40)
Esempio n. 5
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 def test_get_bit_length_from_merged_plateau_lengths(self):
     merged_lengths = [40, 40, 40, 40, 40, 30, 50, 30, 90, 40, 40, 80, 160, 30, 50, 30]
     self.assertEqual(AutoInterpretation.get_bit_length_from_plateau_lengths(merged_lengths), 40)