def __init__( self, delimiter='\t', comment='#' ): FlatFileParser.__init__( self, delimiter, comment ) requiredHeaders = {"bNumber":"Name", "gene":"gene", "function":"function"} optionalHeaders = {} self.addRequiredHeaders( requiredHeaders ) self.addOptionalHeaders( optionalHeaders )
def __init__( self, delimiter='\t', comment='#' ): FlatFileParser.__init__( self, delimiter, comment ) requiredHeaders = {"Abbreviation":"Name", "OfficialName":"OfficialName", "Equation":"Equation"} optionalHeaders = {} self.addRequiredHeaders( requiredHeaders ) self.addOptionalHeaders( optionalHeaders )
def __init__(self,delimiter='\t',comment='#'): FlatFileParser.__init__( self, delimiter, comment ) requiredHeaders = {"Abbreviation":"Name", "OfficialName":"OfficialName"} optionalHeaders = {"concentration":"concentration","lower":"lower","upper":"upper","compartment":"compartment"} self.addRequiredHeaders( requiredHeaders ) self.addOptionalHeaders( optionalHeaders )
def __init__( self, delimiter='\t',comment="#"): FlatFileParser.__init__( self, delimiter, comment ) requiredHeaders = {"Flux":"Name", "Coefficient":"Coefficient"} optionalHeaders = {} self.addRequiredHeaders( requiredHeaders ) self.addOptionalHeaders( optionalHeaders )
def __init__( self, delimiter='\t', comment='#' ): FlatFileParser.__init__( self, delimiter, comment ) self.reactionParser = ReactionParser() requiredHeaders = { "Abbreviation":"name", "Equation":"equation", "Lower Bound":"lowerBound", "Upper Bound":"upperBound" } optionalHeaders = {"objective":"objective"} self.addRequiredHeaders( requiredHeaders ) self.addOptionalHeaders( optionalHeaders ) self.setObjectiveTag( "objective function" )
def __init__( self, delimiter='\t', comment='#' ): FlatFileParser.__init__( self, delimiter, comment ) self.setHeader( ["Flux", "Coefficient"] )
def __init__( self, delimiter='\t', comment='#' ): FlatFileParser.__init__( self, delimiter, comment ) self.setHeader( ["Flux", "Lower", "Upper"] ) self.noLimit = ['None'] self.posInf = 1e3 self.negInf = -1e3