def load_files(file1, file2):
"""
Loads the results from two tests, and generate an HTML page with the differences.
"""
f = open("results/" + file1, "r")
results = json.loads(f.read())
f.close()
f = open("results/" + file2, "r")
previous_results = json.loads(f.read())
f.close()
compare(results, previous_results)
def load_files(file1, file2):
"""
Loads the results from two tests, and generate an HTML page with the differences.
"""
f = open("results/"+file1, "r")
results = json.loads(f.read())
f.close()
f = open("results/"+file2, "r")
previous_results = json.loads(f.read())
f.close()
compare(results, previous_results)
def bestCode(self, Count, response, PrecedentTry):
self.reponse = response
self.TryNumber = Count
self.PrecedentTry = PrecedentTry
h = 1
eligible = []
#On fait se développer la population tant que l'on a pas assez d'evenement éligible
while (h <= self.MaxGen and len(eligible) <= self.MaxSize):
self.DevGenetic()
for i in range(self.TaillePopu):
difBP = 0
difMP = 0
for j in range(len(self.PrecedentTry)):
BP, MP = util.compare(self.PrecedentTry[j], self.popu[i])
difBP += self.B * abs(BP - self.reponse[j][0])
difMP += abs(MP - self.reponse[j][1])
if difBP == 0 and difMP == 0:
exists = False
for elements in eligible:
if elements == self.popu[i]:
exists = True
if exists == False:
eligible.append(self.popu[i])
h += 1
if len(eligible) == 0:
bestfit = 10000
bestcode = util.gen(self.positions, self.CouleurPossible)
for i in range(self.TaillePopu):
if self.fitness(self.popu[i]) > bestfit:
bestfit = self.fitness(self.popu[i])
bestcode = self.popu[i]
return bestcode
bestguess = eligible[0]
mostSimilarity = 0
similarity = 0
# On choisit celui le plus semblable au code de base
for elements in eligible:
for elements2 in eligible:
if (elements != elements2):
BP, MP = util.compare(elements2, elements)
similarity += BP + MP
if (similarity >= mostSimilarity):
mostSimilarity = similarity
bestguess = elements
return bestguess
def calc_plot_error(self):
perc_errors = {"gamma_func": [], "params": []}
abs_errors = {"gamma_func": [], "params": []}
for art in self.articles:
try:
perc_error,abs_error = compare(art.views,art.est_params)
perc_errors["params"].append(perc_error)
abs_errors["params"].append(abs_error)
if self.pattern.has_gamma:
perc_error,abs_error = compare(art.views,art.est_gamma_func)
perc_errors["gamma_func"].append(perc_error)
abs_errors["gamma_func"].append(abs_error)
except IndexError:
self.catch_error(art,"calc_error")
plt.plot_errors(perc_errors,abs_errors,self.plotfolder,self.pattern)
self.errors = {"normalized": perc_errors, "absolute": abs_errors}
def save_compare_results():
"""
Save the current results, and if previous results are available, generate an HTML page with the differences
"""
global results, str_date
commit = out = subprocess.Popen(
['git', 'log', '-n 1', '--pretty=format:"%H"'],
stdout=subprocess.PIPE).communicate()[0]
results["hash"] = commit
# Save results
if not os.path.exists("results"):
os.makedirs("results")
str_date = time.strftime("%y.%m.%d-%H:%M:%S")
f = open("results/result_" + str_date + ".txt", "w")
str_res = json.dumps(results, indent=2)
f.write(str_res)
f.close()
# Read all the previous results stored in results/
file_paths = []
for root, directories, files in os.walk("results/"):
for filename in files:
# Join the two strings in order to form the full filepath.
filepath = os.path.join(root, filename)
file_paths.append(filepath) # Add it to the list.
# Sort files, we just need the last one (the most recent one)
file_paths.sort()
if len(file_paths) > 1:
last_file = file_paths[-2] #The last file is the one we just saved
f = open(last_file, "r")
previous_results = json.loads(f.read())
f.close()
else:
previous_results = {}
compare(results, previous_results)
def save_compare_results():
"""
Save the current results, and if previous results are available, generate an HTML page with the differences
"""
global results, str_date
commit = out = subprocess.Popen(['git', 'log', '-n 1', '--pretty=format:"%H"'], stdout=subprocess.PIPE).communicate()[0]
results["hash"] = commit
# Save results
if not os.path.exists("results"):
os.makedirs("results")
str_date = time.strftime("%y.%m.%d-%H:%M:%S")
f = open("results/result_"+str_date+".txt", "w")
str_res = json.dumps(results, indent=2)
f.write(str_res)
f.close()
# Read all the previous results stored in results/
file_paths = []
for root, directories, files in os.walk("results/"):
for filename in files:
# Join the two strings in order to form the full filepath.
filepath = os.path.join(root, filename)
file_paths.append(filepath) # Add it to the list.
# Sort files, we just need the last one (the most recent one)
file_paths.sort()
if len(file_paths) > 1:
last_file = file_paths[-2] #The last file is the one we just saved
f = open(last_file, "r")
previous_results = json.loads(f.read())
f.close()
else:
previous_results = {}
compare(results, previous_results)
def defects_data_ccn(stream_info, error_lines, blame_lines):
defects = []
try:
for idx, line in enumerate(error_lines):
ccn_cc = {}
line_array = line.strip().split("->")
if len(line_array) == 7:
ccn_cc["function_name"] = line_array[1]
ccn_cc["long_name"] = line_array[2]
ccn_cc["total_lines"] = line_array[4]
ccn_cc["ccn"] = line_array[5]
ccn_cc["condition_lines"] = line_array[6].replace(
' ', '').replace('{', '').replace('}', '')
function_lines = line_array[3].split('-')
ccn_cc["start_lines"] = function_lines[0]
ccn_cc["end_lines"] = function_lines[1]
author_info = ""
for i in range(int(function_lines[0]), int(function_lines[1])):
line_blame_data = blame_lines[i].split('->')
if author_info != "":
info_array = author_info.split('->')
if util.compare(
info_array[1].strip().split('.')[0],
line_blame_data[2].strip().split('.')[0]):
author_info = line_blame_data[
1] + "->" + line_blame_data[2].strip()
else:
author_info = line_blame_data[
1] + "->" + line_blame_data[2].strip()
ccn_cc["author"] = author_info.split('->')[0]
temp_datetime = author_info.split('->')[1]
st = time.strptime(temp_datetime, '%Y-%m-%dT%H:%M:%S.%f')
final_datetime = time.mktime(st)
ccn_cc["latest_datetime"] = int(round(final_datetime * 1000))
defects.append(ccn_cc)
except Exception as e:
raise Exception(e)
return defects
NombreCouleur = int(sys.argv[3])
positions = int(sys.argv[2])
Couleur = Couleur[:NombreCouleur]
code = gen()
#print("code to find:" + str(code))
if sys.argv[1] == 'GA' :
ponderation = 2
depart = 0
pourcentage = 2
TailleEligible = 15*positions
TaillePopu = 35*positions
NombreGen = 40*positions
GA = UseGA.UseGA(Couleur, positions, ponderation, depart, pourcentage, TailleEligible, TaillePopu, NombreGen)
while BP != positions :
#print ("Proposition n° : "+ str(GA.compte) + " -> " + str(GA.nextMove()))
BP,MP = util.compare(GA.actual_prop, code)
GA.reponse(MP,BP)
i += 1
if sys.argv[1] == 'PSO' :
NbreCluster = 10
NbreAgent = 5
Distmin = 2
distmax = 4
distpull = 3
MaxGen = 10
PSO = UsePSO.UsePSO(Couleur, positions,NbreCluster, NbreAgent, Distmin, distmax, distpull,MaxGen )
while BP != positions :
#print ("Proposition n° : "+ str(len(PSO.propositions)) + " -> " + str(PSO.actual_prop))
BP,MP = util.compare(PSO.actual_prop, code)
if BP != positions :
def evaluation(self, test, i):
BP, MP = util.compare(test, self.PrecedentTry[i])
e = abs(
self.score(self.reponse[i][0], self.reponse[i][1]) -
self.score(BP, MP))
return e
def main():
parser = argparse.ArgumentParser()
parser.add_argument('--train_data_dir', type=str, default='data/test.txt')
parser.add_argument('--test_data_dir', type=str, default='data/test.txt')
parser.add_argument('--batch_size', type=int, default=32)
parser.add_argument('--word_dim', type=int, default=128)
parser.add_argument('--tag_sum', type=int, default=7)
parser.add_argument('--num_epochs', type=int, default=1)
parser.add_argument('--min_freq', type=int, default=0)
parser.add_argument('--learning_rate', type=float, default=0.001)
parser.add_argument('--test_batch_size', type=int, default=32)
parser.add_argument('--max_len', type=int, default=100)
parser.add_argument('--dropout_keep', type=float, default=0.8)
args = parser.parse_args()
train_data_loader = Dataloader(args.train_data_dir, args.batch_size,
args.min_freq, True, args.max_len)
args.vocab_size = train_data_loader.vocab_size
input_data = tf.placeholder(tf.int32, [args.batch_size, args.max_len])
target = tf.placeholder(tf.int32, [args.batch_size, args.max_len])
sequence_length = tf.placeholder(tf.int32, [args.batch_size])
embeddings = tf.Variable(
tf.random_uniform([args.vocab_size, args.word_dim], -1.0, 1.0))
embeddings = tf.nn.l2_normalize(embeddings, 1)
input_data_embedding = tf.nn.embedding_lookup(embeddings, input_data)
input_data_embedding = tf.nn.dropout(input_data_embedding,
args.dropout_keep)
lstm_fw_cell = tf.nn.rnn_cell.LSTMCell(args.word_dim,
forget_bias=1.0,
state_is_tuple=True)
lstm_bw_cell = tf.nn.rnn_cell.LSTMCell(args.word_dim,
forget_bias=1.0,
state_is_tuple=True)
(output_fw, output_bw), state = tf.nn.bidirectional_dynamic_rnn(
lstm_fw_cell,
lstm_bw_cell,
input_data_embedding,
dtype=tf.float32,
sequence_length=sequence_length)
bilstm_output = tf.concat([output_fw, output_bw], axis=2)
W = tf.get_variable(
name='W',
shape=[args.batch_size, 2 * args.word_dim, args.tag_sum],
dtype=tf.float32,
initializer=tf.zeros_initializer())
b = tf.get_variable(name='b',
shape=[args.batch_size, args.max_len, args.tag_sum],
dtype=tf.float32,
initializer=tf.zeros_initializer())
bilstm_output = tf.tanh(tf.matmul(bilstm_output, W) + b)
log_likelihood, transition_params = tf.contrib.crf.crf_log_likelihood(
bilstm_output, target,
tf.tile(np.array([args.max_len]), np.array([args.batch_size])))
transition_params_ = tf.placeholder(shape=transition_params.shape,
dtype=tf.float32)
viterbi_sequence, viterbi_score = tf.contrib.crf.crf_decode(
bilstm_output, transition_params_,
tf.tile(np.array([args.max_len], dtype=np.int32),
np.array([args.batch_size], dtype=np.int32)))
loss = tf.reduce_mean(-log_likelihood)
optimizer = tf.train.AdamOptimizer(args.learning_rate)
train_op = optimizer.minimize(loss)
# train model
sess = tf.Session()
print('---------- train ----------')
sess.run(tf.global_variables_initializer())
for e in range(args.num_epochs):
print('epoch:', e)
train_data_loader.reset_batch_pointer()
for b in range(train_data_loader.num_batches):
x, y, sl = train_data_loader.next_batch()
# print(sl)
feed = {input_data: x, target: y, sequence_length: sl}
tf_transition_params, _ = sess.run([transition_params, train_op],
feed)
# sess.run(train_op, feed)
if b % 100 == 0:
train_loss = sess.run(loss, feed)
print('iter', b, ' loss:', train_loss)
# test model
print('---------- test ----------')
test_data_loader = Dataloader(args.test_data_dir, args.test_batch_size,
args.min_freq, False, args.max_len)
test_data_loader.reset_batch_pointer()
total_y_num = 0
total_pre_num = 0
total_true_num = 0
for b in range(test_data_loader.num_batches):
x, y, sl = test_data_loader.next_batch()
feed = {
input_data: x,
target: y,
transition_params_: tf_transition_params,
sequence_length: sl
}
tf_viterbi_sequence, tf_viterbi_score = sess.run(
[viterbi_sequence, viterbi_score], feed)
for pre, y_ in zip(tf_viterbi_sequence, y):
true_num, y_num, pre_num = compare(y_, pre)
total_true_num += true_num
total_y_num += y_num
total_pre_num += pre_num
# 准确率 = 交集 / 模型抽取出的实体
# 召回率 = 交集 / 数据集中的所有实体
# f值 = 2×(准确率×召回率) / (准确率 + 召回率)
if total_pre_num == 0:
# print('total pre num is 0')
accuracy = 0
else:
accuracy = total_true_num / total_pre_num
if total_y_num == 0:
# print('total y num is 0')
recall = 0
else:
recall = total_true_num / total_y_num
if total_pre_num == 0 or total_y_num == 0:
# print('f1 is 0')
f1 = 0
else:
f1 = 2 * accuracy * recall / (accuracy + recall)
with open('result.txt', 'w') as fin:
fin.write('------------test result-------------')
fin.write('total true num:' + str(total_true_num) + '\n')
fin.write('total y num:' + str(total_y_num) + '\n')
fin.write('total predict num:' + str(total_pre_num) + '\n')
fin.write('accuracy:' + str(accuracy) + '\n')
fin.write('recall:' + str(recall) + '\n')
fin.write('f1-score:' + str(f1) + '\n')
print('total true num:' + str(total_true_num))
print('total y num:' + str(total_y_num))
print('total predict num:' + str(total_pre_num))
print('accuracy:' + str(accuracy))
print('recall:' + str(recall))
print('f1-score:' + str(f1))
def evaluation(self, test, i ) :
BP,MP = util.compare(test, self.PrecedentTry[i])
#e = abs(self.score(self.reponse[i][0],self.reponse[i][1]) - self.score(BP,MP)) + Genetic.B * i
e = abs(self.reponse[i][0] - BP) + abs(self.reponse[i][1] - MP)
return e
def dupc_generate_data_json(stream_info):
try:
all_result_json = {}
with open(stream_info['PROJECT_FILE_DUPC_JSON'], "r",
encoding='utf-8') as jsonfile:
all_result_json = json.load(jsonfile)
for idx, file_info in enumerate(all_result_json['files_info']):
filedata = {}
filename_result = result.get_result_file_path(
stream_info["STREAM_RESULT_PATH"], file_info['file_path'])
txt_file_path_blame = filename_result + ".scm_blame.txt"
xml_file_path_info = filename_result + ".scm_info.xml"
xml_file_path_url = filename_result + ".scm_url.xml"
file_info["file_change_time"] = scm.parse_info_xml(
xml_file_path_info, stream_info)
filedata = scm.parse_log_xml(xml_file_path_url,
file_info['file_path'], stream_info)
blameline = ""
file_author_set = set([])
if os.path.isfile(txt_file_path_blame):
with open(txt_file_path_blame, "r",
encoding='utf-8') as blame_line:
blameline = blame_line.readlines()
for block_idx, block in enumerate(file_info['block_list']):
author_name_set = set([])
author_name_list = []
author_list = {}
lines_list = range(0, len(blameline))
if len(blameline) > int(
block['start_lines']) and len(blameline) < int(
block['end_lines']):
lines_list = range(int(block['start_lines']),
len(blameline))
elif len(blameline) > int(block['end_lines']):
lines_list = range(int(block['start_lines']),
int(block['end_lines']))
for i in lines_list:
line_blame_data = blameline[i].split('->')
author_name_list.append(line_blame_data[1])
author_name_set.add(line_blame_data[1])
if line_blame_data[1] in author_list:
change_time = author_list[
line_blame_data[1]].strip().split('.')[0]
if util.compare(
change_time,
line_blame_data[2].strip().split('.')[0]):
author_list[line_blame_data[1]] = line_blame_data[
2].strip()
else:
author_list[
line_blame_data[1]] = line_blame_data[2].strip()
author_info = ""
for author_name in author_name_set:
if author_info != "":
info_array = author_info.split('->')
if int(info_array[1]) < author_name_list.count(
author_name):
author_info = author_name + "->" + str(
author_name_list.count(author_name)
) + "->" + author_list[author_name]
else:
author_info = author_name + "->" + str(
author_name_list.count(
author_name)) + "->" + author_list[author_name]
if author_info != "":
file_author_set.add(author_info.split('->')[0])
block['author'] = author_info.split('->')[0]
temp_datetime = str(author_info.split('->')[2])
st = time.strptime(temp_datetime, '%Y-%m-%dT%H:%M:%S.%f')
final_datetime = time.mktime(st)
block['latest_datetime'] = final_datetime
file_info['block_list'][block_idx] = block
file_info['author_list'] = ';'.join(file_author_set)
filedata['tool_name'] = 'dupc'
filedata["stream_name"] = stream_info['STREAM_NAME']
filedata["task_id"] = stream_info['TASK_ID']
#压缩字符串
zip_bytes = zlib.compress(
bytes(json.dumps(file_info), encoding='utf-8'))
#base64编码
zip_str = base64.b64encode(zip_bytes).decode('utf-8')
filedata["defectsCompress"] = zip_str
filedata_data = json.dumps(filedata)
filedata_data = filedata_data.replace(": ", ":")
#print(util.get_datetime()+" start upload file "+file_info['file_path'])
#print(filedata_data)
codecc_web.codecc_upload_file_json(filedata_data)
project_summary = {}
project_summary['stream_name'] = stream_info['STREAM_NAME']
project_summary['task_id'] = stream_info['TASK_ID']
project_summary['scan_summary'] = all_result_json['scan_summary']
summary_data = json.dumps(project_summary)
summary_data = summary_data.replace(": ", ":")
#print(util.get_datetime()+" start submit summary_data")
codecc_web.upload_project_dupc_summary(summary_data)
except Exception as e:
raise Exception(e)