def gettrack_roms(jdmat_m, lon_v, lat_v, u, v, startdate, numdays, daystep, la, lo): # tracks particle at surface
# calculate the points near la,lo
distance, index_location = nearxy(lon_v, lat_v, lo, la)
####### get index of startdate in jdmat_m#####
jdmat_m_num = [] # this is the date in the form of a number
jdmat_m_list, jdmat = [], []
# convert array to list
for jdmat_m_i in jdmat_m:
jdmat_m_list.append(jdmat_m_i)
for i in jdmat_m_list: # convert time to number
jdmat_m_num.append(i)
dts = date2num(dt.datetime(2001, 1, 1, 0, 0, 0))
jdmat_m = [i + dts for i in jdmat_m]
index_startdate = int(round(np.interp(startdate, jdmat_m, range(len(jdmat_m)))))#get the index of startdate
print "index_startdate = ", index_startdate, " inside getreack_roms "
print "the start u's location", index_location
u1 = float(u[index_startdate][index_location])
v1 = float(v[index_startdate][index_location])
if u1 == -999.0: # case of no good data
u1 = 0
v1 = 0
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
print "nsteps =", nsteps
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(startdate)
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + float(vv[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60
lon1 = lon_k[i - 1] + float(uu[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * (scipy.cos(float(lat_k[i - 1])) / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
if jdmat_m_num_i > max(jdmat_m_num):
print "This time is not available in the model"
index_startdate = int(round(np.interp(jdmat_m_num_i, jdmat_m_num, range(len(jdmat_m_num)))))
#find the point's index of near lat1,lon1
index_location = nearxy(lon_v, lat_v, lon1, lat1)[1]
ui = u[index_startdate][index_location]
vi = v[index_startdate][index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(float(lat1 + lat_k[i - 1] + float(vv[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60) / 2)
lon_k.append(float(lon1 + lon_k[i - 1] + float(uu[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * scipy.cos(float(lat_k[i]) / 180 * np.pi)) / 2)
return lat_k, lon_k, time
def getFVCOM_bottom_temp(url, time0, mlon, mlat):
"""get depth from the getmodel"""
dataset = get_dataset(url)
tri = dataset['nv']
jdmat_m = list(dataset['Times'])
temp = dataset['temp']
h_vel = list(dataset['h'])
siglay = dataset['siglay']
lat_vel = list(dataset['lat'])
lon_vel = list(dataset['lon'])
# get the tri0,tri1,tri2 as the location of three points
tri0 = [i for i in tri[0]]
tri1 = [i for i in tri[1]]
tri2 = [i for i in tri[2]]
lat_vel_1, lon_vel_1 = [], []
for i in range(len(tri0)):
if tri1[i] == len(lat_vel):
tri1[i] = len(lat_vel) - 1
if tri2[i] == len(lat_vel):
tri2[i] = len(lat_vel) - 1
lat_vel_1.append(
float((lat_vel[tri0[i]] + lat_vel[tri1[i]] + lat_vel[tri2[i]])) /
float(3))
lon_vel_1.append(
float((lon_vel[tri0[i]] + lon_vel[tri1[i]] + lon_vel[tri2[i]])) /
float(3))
# get the min distance
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, mlon, mlat)
(disth, index_location_h) = nearxy(lon_vel, lat_vel, mlon, mlat)
#exclude incorrect data
jdmat = [jd for jd in jdmat_m if jd[17:19] != 60]
jdmat_m_num = [] # this is the data in the form of a number
for i in jdmat:
jdmat_m_num.append(
date2num(dt.datetime.strptime(i, '%Y-%m-%dT%H:%M:%S.%f')))
depths = h_vel[index_location_h] * siglay[:, index_location_h]
#get the ids of depths
depths_list = []
for d in range(0, len(depths)):
depths_list.append(depths[d])
depths_list.reverse() #Where is this used???
jdmat_index = range(len(jdmat_m_num))
index_time = int(round(np.interp(time0, jdmat_m_num, jdmat_index)))
temperature = list(temp[index_time, :, index_location_h])
return depths, temperature
def getFVCOM_bottom_temp(url, time0, mlon, mlat):
"""get depth from the getmodel"""
dataset = get_dataset(url)
tri = dataset["nv"]
jdmat_m = list(dataset["Times"])
temp = dataset["temp"]
h_vel = list(dataset["h"])
siglay = dataset["siglay"]
lat_vel = list(dataset["lat"])
lon_vel = list(dataset["lon"])
# get the tri0,tri1,tri2 as the location of three points
tri0 = [i for i in tri[0]]
tri1 = [i for i in tri[1]]
tri2 = [i for i in tri[2]]
lat_vel_1, lon_vel_1 = [], []
for i in range(len(tri0)):
if tri1[i] == len(lat_vel):
tri1[i] = len(lat_vel) - 1
if tri2[i] == len(lat_vel):
tri2[i] = len(lat_vel) - 1
lat_vel_1.append(float((lat_vel[tri0[i]] + lat_vel[tri1[i]] + lat_vel[tri2[i]])) / float(3))
lon_vel_1.append(float((lon_vel[tri0[i]] + lon_vel[tri1[i]] + lon_vel[tri2[i]])) / float(3))
# get the min distance
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, mlon, mlat)
(disth, index_location_h) = nearxy(lon_vel, lat_vel, mlon, mlat)
# exclude incorrect data
jdmat = [jd for jd in jdmat_m if jd[17:19] != 60]
jdmat_m_num = [] # this is the data in the form of a number
for i in jdmat:
jdmat_m_num.append(date2num(dt.datetime.strptime(i, "%Y-%m-%dT%H:%M:%S.%f")))
depths = h_vel[index_location_h] * siglay[:, index_location_h]
# get the ids of depths
depths_list = []
for d in range(0, len(depths)):
depths_list.append(depths[d])
depths_list.reverse() # Where is this used???
jdmat_index = range(len(jdmat_m_num))
index_time = int(round(np.interp(time0, jdmat_m_num, jdmat_index)))
temperature = list(temp[index_time, :, index_location_h])
return depths, temperature
def gettrack_codar(jdmat_m,lon_vel,lat_vel,u,v,startdate,numdays,daystep,la,lo):
"""
tracks particle at surface
"""
# calculate the points near la,la
distance,index_location=nearxy(lon_vel,lat_vel,lo,la)
####### get index of startdate in jdmat_m#####
jdmat_m_num=[] # this is the date in the form of a number
jdmat_m_list,jdmat=[],[]
# convert array to list
for jdmat_m_i in jdmat_m:
jdmat_m_list.append(jdmat_m_i)
for i in jdmat_m_list: # convert time to number
jdmat_m_num.append(i)
dts=date2num(datetime.datetime(2001,1,1,0,0,0))
jdmat_m=[i+dts for i in jdmat_m]
index_startdate=int(round(np.interp(startdate,jdmat_m,range(len(jdmat_m)))))#get the index of startdate
# get u,v
u1=float(u[index_startdate][index_location])
v1=float(v[index_startdate][index_location])
if u1==-999.0/100:# case of no good data
u1=0
v1=0
nsteps=scipy.floor(min(numdays,jdmat_m_num[-1])/daystep)
# get the velocity data at this first time & place
lat_k='lat'+str(1)
lon_k='lon'+str(1)
uu,vv,lon_k,lat_k,time=[],[],[],[],[]
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(startdate)
for i in range(1,int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1=lat_k[i-1]+float(vv[i-1]*daystep*24*3600)/1000/1.8535/60
lon1=lon_k[i-1]+float(uu[i-1]*daystep*24*3600)/1000/1.8535/60*(scipy.cos(float(lat_k[i-1]))/180*np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i=time[i-1]+daystep
time.append(jdmat_m_num_i)
#print jdmat_m_num_i
index_startdate=int(round(np.interp(jdmat_m_num_i,jdmat_m_num,range(len(jdmat_m_num)))))
#find the point's index of near lat1,lon1
index_location=nearxy(lon_vel,lat_vel,lon1,lat1)[1]
ui=u[index_startdate][index_location]
vi=v[index_startdate][index_location]
#if u1<>-999.0/100:# case of good data
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(float(lat1+lat_k[i-1]+float(vv[i]*daystep*24*3600)/1000/1.8535/60)/2)
lon_k.append(float(lon1+lon_k[i-1]+float(uu[i]*daystep*24*3600)/1000/1.8535/60*scipy.cos(float(lat_k[i])/180*np.pi))/2)
#else:
# vv.append(0)
# uu.append(0)
# estimate the particle move from its new position using velocity of previous time steps
# lat_k.append(float(lat1))
# lon_k.append(float(lon1))
return lat_k,lon_k,time
[lati,loni,on]=getemolt_latlon(site) # extracts lat/lon based on site code
[lati,loni]=dm2dd(lati,loni) #converts decimal-minutes to decimal degrees
[obs_dt,obs_temp]=getemolt_temp(site) # extracts time series
for kk in range(len(obs_temp)):
obs_temp[kk]=f2c(obs_temp[kk]) # converts to Celcius
# now get the model output
urlfvcom = 'http://www.smast.umassd.edu:8080/thredds/dodsC/fvcom/hindcasts/30yr_gom3'
nc = netCDF4.Dataset(urlfvcom)
nc.variables
lat = nc.variables['lat'][:]
lon = nc.variables['lon'][:]
times = nc.variables['time']
jd = netCDF4.num2date(times[:],times.units)
vname = 'temp'
var = nc.variables[vname]
# find nearest point to desired location and time
inode = nearxy(lon,lat,loni,lati)
index=netCDF4.date2index([obs_dt[0],obs_dt[-1]],times,select='nearest')#find the model time index at start & end pf obs
#plot them
fig=plt.figure(figsize=(16,4))
ax=fig.add_subplot(111)
ax.plot_date(obs_dt,obs_temp,fmt='-')
plt.grid()
ax.plot_date(jd[index[0]:index[1]],var[index[0]:index[1],44,inode],fmt='-',color='red')
plt.ylabel(var.units)
plt.title('eMOLT site '+site+' temp vs FVCOM '+'%s at node=%d (Lon=%.4f, Lat=%.4f)' % (vname, inode+1, lon[inode], lat[inode]))
plt.legend(['observed','modeled'],loc='best')
plt.show()
def model_plot_track(depth, jdmat_m, lat_vel_1, lon_vel_1, u, v, lat_vel,
lon_vel, h_vel, siglay, startdate, numdays, daystep, x,
la, lo):
fig = plt.figure(1)
if len(depth) == 1:
panels = len(startdate)
if len(depth) != 1:
panels = len(depth)
for j in range(1, panels + 1):
print int(str(panels) + str(2) + str(j))
if panels == 1:
ax = fig.add_subplot(111)
else:
ax = fig.add_subplot(int(str(2) + str(2) + str(j)))
if j == 3:
plt.xlabel('Longitude W')
if j == 1:
plt.ylabel('Latitude N')
for k in range(len(la)):
for m in range(len(lo)):
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1,
lo[m], la[k])
(disth, index_location_h) = nearxy(lon_vel, lat_vel, lo[m],
la[k])
depths = h_vel[index_location_h] * siglay[:, index_location_h]
# make depths to be descending order
new_depths = list(depths)
new_depths.reverse()
# depths range
range_depths = range(len(depths))
range_depths.reverse()
if len(depth) == 1:
idz = 0
else:
idz = int(
round(np.interp(depth[j - 1], new_depths,
range_depths)))
####### get index of startdate in jdmat_m
jdmat_m_num = [] # this is the data in the form of a number
del_list, jdmat, del_index = [], [], []
# convert array to list
jdmat_m_list = [jdmat_m_i for jdmat_m_i in jdmat_m]
# while seconds=60, can change the datetime to number, so delete
for i in range(1, len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == '60' or jdmat_m_list[
i - 1] == jdmat_m_list[i]:
del_list.append(jdmat_m_list[i])
del_index.append(i) #get the index of deleted datetime
jdmat = [val for val in jdmat_m_list if val not in del_list
] # delete the wrong value, jdmat just
for i in jdmat: # convert time to number
jdmat_m_num.append(
date2num(
dt.datetime.strptime(i, '%Y-%m-%dT%H:%M:%S.%f')))
# get index of startdate in jdmat_m_num
index_startdate_1 = int(
round(
np.interp(date2num(startdate[j - 1]), jdmat_m_num,
range(len(jdmat_m_num)))))
if del_index != []:
index_add = int(
np.ceil(
np.interp(index_startdate_1, del_index,
range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# get u,v
u1 = float(u[index_startdate, idz, index_location])
v1 = float(v[index_startdate, idz, index_location])
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
# get the velocity data at this first time & place
lat_k = 'lat' + str(k)
lon_k = 'lon' + str(k)
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la[k])
lon_k.append(lo[m])
time.append(date2num(startdate[j - 1]))
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + float(
vv[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60
lon1 = lon_k[i - 1] + float(
uu[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * (
scipy.cos(float(lat_k[i - 1])) / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
index_startdate_1 = int(
round(
np.interp(jdmat_m_num_i, jdmat_m_num,
range(len(jdmat_m_num)))))
if del_index != []:
index_add = int(
np.ceil(
np.interp(index_startdate_1, del_index,
range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
#find the point's index of near lat1,lon1
index_location = nearxy(lon_vel_1, lat_vel_1, lon1, lat1)[1]
ui = u[index_startdate, 1, index_location]
vi = v[index_startdate, 1, index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(
float(lat1 + lat_k[i - 1] +
float(vv[i] * daystep * 24 * 3600) / 1000 / 1.8535 /
60) / 2)
lon_k.append(
float(lon1 + lon_k[i - 1] +
float(uu[i] * daystep * 24 * 3600) / 1000 / 1.8535 /
60 * scipy.cos(float(lat_k[i]) / 180 * np.pi)) / 2)
plt.plot(lon_k,
lat_k,
"-",
linewidth=1,
marker=".",
markerfacecolor='r')
basemap([min(lat_k) - 2, max(lat_k) + 2],
[min(lon_k) - 2, max(lon_k) + 2])
# make same size for the panels
min_lat, max_lon, max_lat, min_lon = [], [], [], []
min_lat.append(min(lat_k))
max_lat.append(max(lat_k))
min_lon.append(min(lon_k))
max_lon.append(max(lon_k))
text1 = ax.annotate(str(num2date(time[0]).month) + "-" +
str(num2date(time[0]).day),
xy=(lon_k[0], lat_k[0]),
xycoords='data',
xytext=(8, 10),
textcoords='offset points',
arrowprops=dict(arrowstyle="->"))
text1.draggable()
text1 = ax.annotate(str(num2date(time[-1]).month) + "-" +
str(num2date(time[-1]).day),
xy=(lon_k[-1], lat_k[-1]),
xycoords='data',
xytext=(8, 10),
textcoords='offset points',
arrowprops=dict(arrowstyle="->"))
#set the numbers formatter
majorFormatter = FormatStrFormatter('%.2f')
ax.yaxis.set_major_formatter(majorFormatter)
ax.xaxis.set_major_formatter(majorFormatter)
if len(depth) == 1:
plt.title(str(num2date(time[i - 1]).year))
else:
plt.title(
str(num2date(time[i - 1]).year) + " year" + " depth: " +
str(depth[j - 1]))
ax.xaxis.set_label_coords(0.5, -0.005) #set the position of the xlabel
ax.yaxis.set_label_coords(-0.1, 0.5)
plt.xlim([min(min_lon), max(max_lon)])
plt.ylim([min(min_lat), max(max_lat)])
plt.show()
def gettrack_roms(jdmat_m, lon_v, lat_v, u, v, startdate, numdays, daystep, la,
lo): # tracks particle at surface
# calculate the points near la,lo
distance, index_location = nearxy(lon_v, lat_v, lo, la)
####### get index of startdate in jdmat_m#####
jdmat_m_num = [] # this is the date in the form of a number
jdmat_m_list, jdmat = [], []
# convert array to list
for jdmat_m_i in jdmat_m:
jdmat_m_list.append(jdmat_m_i)
for i in jdmat_m_list: # convert time to number
jdmat_m_num.append(i)
dts = date2num(dt.datetime(2001, 1, 1, 0, 0, 0))
jdmat_m = [i + dts for i in jdmat_m]
index_startdate = int(
round(np.interp(startdate, jdmat_m,
range(len(jdmat_m))))) #get the index of startdate
print "index_startdate = ", index_startdate, " inside getreack_roms "
print "the start u's location", index_location
u1 = float(u[index_startdate][index_location])
v1 = float(v[index_startdate][index_location])
if u1 == -999.0: # case of no good data
u1 = 0
v1 = 0
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
print "nsteps =", nsteps
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(startdate)
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + float(
vv[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60
lon1 = lon_k[i - 1] + float(
uu[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * (
scipy.cos(float(lat_k[i - 1])) / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
if jdmat_m_num_i > max(jdmat_m_num):
print "This time is not available in the model"
index_startdate = int(
round(
np.interp(jdmat_m_num_i, jdmat_m_num,
range(len(jdmat_m_num)))))
#find the point's index of near lat1,lon1
index_location = nearxy(lon_v, lat_v, lon1, lat1)[1]
ui = u[index_startdate][index_location]
vi = v[index_startdate][index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(
float(lat1 + lat_k[i - 1] +
float(vv[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60) / 2)
lon_k.append(
float(lon1 + lon_k[i - 1] +
float(uu[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 *
scipy.cos(float(lat_k[i]) / 180 * np.pi)) / 2)
return lat_k, lon_k, time
def gettrack_FVCOM(depth, jdmat_m, lat_vel_1, lon_vel_1, u, v, lat_vel,
lon_vel, h_vel, siglay, startdate, numdays, daystep, la,
lo):
"""get the track for models"""
# calculate the points near la,la
(disth, index_location_h) = nearxy(lon_vel, lat_vel, lo, la)
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, lo, la)
# calculate all the depths
depths = h_vel[index_location_h] * siglay[:, index_location_h]
# make depths to be descending order
new_depths = list(depths).reverse()
# depths range
range_depths = range(len(depths)).reverse()
# calculate the index of depth in the depths
idz = int(round(np.interp(depth, new_depths, range_depths)))
print "the depth index is:", idz
####### get index of startdate in jdmat_m#####
jdmat_m_num = [] # this is the data in the form of a number
del_list, jdmat, del_index = [], [], []
# convert array to list
jdmat_m_list = [jdmat_m_i for jdmat_m_i in jdmat_m]
# while seconds=60, can change the datetime to number, so delete
for i in range(1, len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == '60' or jdmat_m_list[
i - 1] == jdmat_m_list[i]:
del_list.append(jdmat_m_list[i])
del_index.append(i) #get the index of deleted datetime
jdmat = [val for val in jdmat_m_list
if val not in del_list] # delete the wrong value, jdmat just
for i in jdmat: # convert time to number
jdmat_m_num.append(
date2num(dt.datetime.strptime(i, '%Y-%m-%dT%H:%M:%S.%f')))
index_startdate_1 = int(
round(
np.interp(date2num(startdate), jdmat_m_num,
range(len(jdmat_m_num))))) #get the index of startdate
print "the index of start date is:", index_startdate_1
# calculate the delete index of time for u and v
if del_index != []:
index_add = int(
np.ceil(
np.interp(index_startdate_1, del_index,
range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# get u,v
u1 = float(u[index_startdate, idz, index_location])
v1 = float(v[index_startdate, idz, index_location])
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
# get the velocity data at this first time & place
lat_k = 'lat' + str(1)
lon_k = 'lon' + str(1)
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(date2num(startdate))
delete_id = []
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + vv[i - 1] * daystep * 0.7769085
lon1 = lon_k[i - 1] + uu[i - 1] * daystep * 0.7769085 * scipy.cos(
lat_k[i - 1] / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
index_startdate_1 = int(
round(
np.interp(jdmat_m_num_i, jdmat_m_num,
range(len(jdmat_m_num)))))
if del_index != []:
index_add = int(
np.ceil(
np.interp(index_startdate_1, del_index,
range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
#find the point's index of near lat1,lon1
index_location = nearxy(lon_vel_1, lat_vel_1, lon1, lat1)[1]
# calculate the model depth
depth_model = getdepth(lat_k[i - 1], lon_k[i - 1])
#get u and v
ui = u[index_startdate, idz, index_location]
vi = v[index_startdate, idz, index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append((lat1 + lat_k[i - 1] + vv[i] * daystep * 0.7769085) / 2.)
lon_k.append(
(lon1 + lon_k[i - 1] +
uu[i] * daystep * 0.7769085 * scipy.cos(lat_k[i] / 180 * np.pi)) /
2.)
if depth_model > 0:
delete_id.append(i)
#delete the depth is greater than 0
delete_id.reverse()
for i in delete_id:
del lat_k[i]
del lon_k[i]
del time[i]
del uu[i]
del vv[i]
if delete_id != []:
del lat_k[-1]
del lon_k[-1]
del time[-1]
del uu[-1]
del vv[-1]
return lat_k, lon_k, time, uu, vv
def gettrack_codar(jdmat_m, lon_vel, lat_vel, u, v, startdate, numdays,
daystep, la, lo):
"""
tracks particle at surface
"""
# calculate the points near la,la
distance, index_location = nearxy(lon_vel, lat_vel, lo, la)
####### get index of startdate in jdmat_m#####
jdmat_m_num = [] # this is the date in the form of a number
jdmat_m_list, jdmat = [], []
# convert array to list
for jdmat_m_i in jdmat_m:
jdmat_m_list.append(jdmat_m_i)
for i in jdmat_m_list: # convert time to number
jdmat_m_num.append(i)
dts = date2num(datetime.datetime(2001, 1, 1, 0, 0, 0))
jdmat_m = [i + dts for i in jdmat_m]
index_startdate = int(
round(np.interp(startdate, jdmat_m,
range(len(jdmat_m))))) #get the index of startdate
# get u,v
u1 = float(u[index_startdate][index_location])
v1 = float(v[index_startdate][index_location])
if u1 == -999.0 / 100: # case of no good data
u1 = 0
v1 = 0
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
# get the velocity data at this first time & place
lat_k = 'lat' + str(1)
lon_k = 'lon' + str(1)
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(startdate)
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + float(
vv[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60
lon1 = lon_k[i - 1] + float(
uu[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * (
scipy.cos(float(lat_k[i - 1])) / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
#print jdmat_m_num_i
index_startdate = int(
round(
np.interp(jdmat_m_num_i, jdmat_m_num,
range(len(jdmat_m_num)))))
#find the point's index of near lat1,lon1
index_location = nearxy(lon_vel, lat_vel, lon1, lat1)[1]
ui = u[index_startdate][index_location]
vi = v[index_startdate][index_location]
#if u1<>-999.0/100:# case of good data
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(
float(lat1 + lat_k[i - 1] +
float(vv[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60) / 2)
lon_k.append(
float(lon1 + lon_k[i - 1] +
float(uu[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 *
scipy.cos(float(lat_k[i]) / 180 * np.pi)) / 2)
#else:
# vv.append(0)
# uu.append(0)
# estimate the particle move from its new position using velocity of previous time steps
# lat_k.append(float(lat1))
# lon_k.append(float(lon1))
return lat_k, lon_k, time
for n in range(nsta):
# Only use if model cell is within 0.04 degree of requested
# location.
if dd[n] <= max_dist:
arr = a[istart:istop, j[n], i[n]].data
if arr.std() >= min_var:
c = mod_df(arr, timevar, istart, istop, mod_name,
ts)
name = station_list[n]['long_name']
model_df[n] = pd.concat([model_df[n], c], axis=1)
model_df[n].name = name
elif len(r) == 2:
print('[Unstructured grid model]:', url)
# Find the closest point from an unstructured grid model.
index, dd = nearxy(lon.flatten(), lat.flatten(), obs_lon,
obs_lat)
for n in range(nsta):
# Only use if model cell is within 0.04 degree of requested
# location.
if dd[n] <= max_dist:
arr = a[istart:istop, index[n]].data
if arr.std() >= min_var:
c = mod_df(arr, timevar, istart, istop, mod_name,
ts)
name = station_list[n]['long_name']
model_df[n] = pd.concat([model_df[n], c], axis=1)
model_df[n].name = name
elif len(r) == 1:
print('[Data]:', url)
except (ValueError, RuntimeError, CoordinateNotFoundError,
ConstraintMismatchError) as e:
wis_lats = []
wis_lons = []
wis_stations = []
for station in location_data:
wis_lats.append(location_data[station]['lat'])
wis_lons.append(location_data[station]['lon'])
wis_stations.append(station)
station_lats = []
station_lons = []
for station in st_list.keys():
if st_list[station]['hasObsData']:
station_lats.append(st_list[station]['lat'])
station_lons.append(st_list[station]['lon'])
ind, dd = nearxy(wis_lons, wis_lats, station_lons, station_lats)
# Now get read the wis data
with open("./WIS_extremes.txt") as extremes_file:
wis_extremes = json.load(extremes_file)
# Get the extremes from the closest station
wis_station_id = wis_stations[ind[0]]
wis_lat = wis_lats[ind[0]]
wis_lon = wis_lons[ind[0]]
wis_maximums = []
wis_directions = []
for year in wis_extremes[wis_station_id].keys():
wis_maximums.append(wis_extremes[wis_station_id][year]['ws_at_max'])
wis_directions.append(wis_extremes[wis_station_id][year]['wdir_at_max'])
wis_lats = []
wis_lons = []
wis_stations = []
for station in location_data:
wis_lats.append(location_data[station]['lat'])
wis_lons.append(location_data[station]['lon'])
wis_stations.append(station)
station_lats = []
station_lons = []
for station in st_list.keys():
if st_list[station]['hasObsData']:
station_lats.append(st_list[station]['lat'])
station_lons.append(st_list[station]['lon'])
ind, dd = nearxy(wis_lons, wis_lats, station_lons, station_lats)
# Now get read the wis data
with open("./WIS_extremes.txt") as extremes_file:
wis_extremes = json.load(extremes_file)
# Get the extremes from the closest station
wis_station_id = wis_stations[ind[0]]
wis_lat = wis_lats[ind[0]]
wis_lon = wis_lons[ind[0]]
wis_maximums = []
wis_directions = []
for year in wis_extremes[wis_station_id].keys():
wis_maximums.append(wis_extremes[wis_station_id][year]['ws_at_max'])
wis_directions.append(wis_extremes[wis_station_id][year]['wdir_at_max'])
def model_plot_track(
depth, jdmat_m, lat_vel_1, lon_vel_1, u, v, lat_vel, lon_vel, h_vel, siglay, startdate, numdays, daystep, x, la, lo
):
fig = plt.figure(1)
if len(depth) == 1:
panels = len(startdate)
if len(depth) != 1:
panels = len(depth)
for j in range(1, panels + 1):
print int(str(panels) + str(2) + str(j))
if panels == 1:
ax = fig.add_subplot(111)
else:
ax = fig.add_subplot(int(str(2) + str(2) + str(j)))
if j == 3:
plt.xlabel("Longitude W")
if j == 1:
plt.ylabel("Latitude N")
for k in range(len(la)):
for m in range(len(lo)):
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, lo[m], la[k])
(disth, index_location_h) = nearxy(lon_vel, lat_vel, lo[m], la[k])
depths = h_vel[index_location_h] * siglay[:, index_location_h]
# make depths to be descending order
new_depths = list(depths)
new_depths.reverse()
# depths range
range_depths = range(len(depths))
range_depths.reverse()
if len(depth) == 1:
idz = 0
else:
idz = int(round(np.interp(depth[j - 1], new_depths, range_depths)))
####### get index of startdate in jdmat_m
jdmat_m_num = [] # this is the data in the form of a number
del_list, jdmat, del_index = [], [], []
# convert array to list
jdmat_m_list = [jdmat_m_i for jdmat_m_i in jdmat_m]
# while seconds=60, can change the datetime to number, so delete
for i in range(1, len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == "60" or jdmat_m_list[i - 1] == jdmat_m_list[i]:
del_list.append(jdmat_m_list[i])
del_index.append(i) # get the index of deleted datetime
jdmat = [val for val in jdmat_m_list if val not in del_list] # delete the wrong value, jdmat just
for i in jdmat: # convert time to number
jdmat_m_num.append(date2num(dt.datetime.strptime(i, "%Y-%m-%dT%H:%M:%S.%f")))
# get index of startdate in jdmat_m_num
index_startdate_1 = int(
round(np.interp(date2num(startdate[j - 1]), jdmat_m_num, range(len(jdmat_m_num))))
)
if del_index != []:
index_add = int(np.ceil(np.interp(index_startdate_1, del_index, range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# get u,v
u1 = float(u[index_startdate, idz, index_location])
v1 = float(v[index_startdate, idz, index_location])
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
# get the velocity data at this first time & place
lat_k = "lat" + str(k)
lon_k = "lon" + str(k)
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la[k])
lon_k.append(lo[m])
time.append(date2num(startdate[j - 1]))
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + float(vv[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60
lon1 = lon_k[i - 1] + float(uu[i - 1] * daystep * 24 * 3600) / 1000 / 1.8535 / 60 * (
scipy.cos(float(lat_k[i - 1])) / 180 * np.pi
)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
index_startdate_1 = int(round(np.interp(jdmat_m_num_i, jdmat_m_num, range(len(jdmat_m_num)))))
if del_index != []:
index_add = int(np.ceil(np.interp(index_startdate_1, del_index, range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# find the point's index of near lat1,lon1
index_location = nearxy(lon_vel_1, lat_vel_1, lon1, lat1)[1]
ui = u[index_startdate, 1, index_location]
vi = v[index_startdate, 1, index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append(float(lat1 + lat_k[i - 1] + float(vv[i] * daystep * 24 * 3600) / 1000 / 1.8535 / 60) / 2)
lon_k.append(
float(
lon1
+ lon_k[i - 1]
+ float(uu[i] * daystep * 24 * 3600)
/ 1000
/ 1.8535
/ 60
* scipy.cos(float(lat_k[i]) / 180 * np.pi)
)
/ 2
)
plt.plot(lon_k, lat_k, "-", linewidth=1, marker=".", markerfacecolor="r")
basemap([min(lat_k) - 2, max(lat_k) + 2], [min(lon_k) - 2, max(lon_k) + 2])
# make same size for the panels
min_lat, max_lon, max_lat, min_lon = [], [], [], []
min_lat.append(min(lat_k))
max_lat.append(max(lat_k))
min_lon.append(min(lon_k))
max_lon.append(max(lon_k))
text1 = ax.annotate(
str(num2date(time[0]).month) + "-" + str(num2date(time[0]).day),
xy=(lon_k[0], lat_k[0]),
xycoords="data",
xytext=(8, 10),
textcoords="offset points",
arrowprops=dict(arrowstyle="->"),
)
text1.draggable()
text1 = ax.annotate(
str(num2date(time[-1]).month) + "-" + str(num2date(time[-1]).day),
xy=(lon_k[-1], lat_k[-1]),
xycoords="data",
xytext=(8, 10),
textcoords="offset points",
arrowprops=dict(arrowstyle="->"),
)
# set the numbers formatter
majorFormatter = FormatStrFormatter("%.2f")
ax.yaxis.set_major_formatter(majorFormatter)
ax.xaxis.set_major_formatter(majorFormatter)
if len(depth) == 1:
plt.title(str(num2date(time[i - 1]).year))
else:
plt.title(str(num2date(time[i - 1]).year) + " year" + " depth: " + str(depth[j - 1]))
ax.xaxis.set_label_coords(0.5, -0.005) # set the position of the xlabel
ax.yaxis.set_label_coords(-0.1, 0.5)
plt.xlim([min(min_lon), max(max_lon)])
plt.ylim([min(min_lat), max(max_lat)])
plt.show()
def gettrack_FVCOM(
depth, jdmat_m, lat_vel_1, lon_vel_1, u, v, lat_vel, lon_vel, h_vel, siglay, startdate, numdays, daystep, la, lo
):
"""get the track for models"""
# calculate the points near la,la
(disth, index_location_h) = nearxy(lon_vel, lat_vel, lo, la)
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, lo, la)
# calculate all the depths
depths = h_vel[index_location_h] * siglay[:, index_location_h]
# make depths to be descending order
new_depths = list(depths).reverse()
# depths range
range_depths = range(len(depths)).reverse()
# calculate the index of depth in the depths
idz = int(round(np.interp(depth, new_depths, range_depths)))
print "the depth index is:", idz
####### get index of startdate in jdmat_m#####
jdmat_m_num = [] # this is the data in the form of a number
del_list, jdmat, del_index = [], [], []
# convert array to list
jdmat_m_list = [jdmat_m_i for jdmat_m_i in jdmat_m]
# while seconds=60, can change the datetime to number, so delete
for i in range(1, len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == "60" or jdmat_m_list[i - 1] == jdmat_m_list[i]:
del_list.append(jdmat_m_list[i])
del_index.append(i) # get the index of deleted datetime
jdmat = [val for val in jdmat_m_list if val not in del_list] # delete the wrong value, jdmat just
for i in jdmat: # convert time to number
jdmat_m_num.append(date2num(dt.datetime.strptime(i, "%Y-%m-%dT%H:%M:%S.%f")))
index_startdate_1 = int(
round(np.interp(date2num(startdate), jdmat_m_num, range(len(jdmat_m_num))))
) # get the index of startdate
print "the index of start date is:", index_startdate_1
# calculate the delete index of time for u and v
if del_index != []:
index_add = int(np.ceil(np.interp(index_startdate_1, del_index, range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# get u,v
u1 = float(u[index_startdate, idz, index_location])
v1 = float(v[index_startdate, idz, index_location])
nsteps = scipy.floor(min(numdays, jdmat_m_num[-1]) / daystep)
# get the velocity data at this first time & place
lat_k = "lat" + str(1)
lon_k = "lon" + str(1)
uu, vv, lon_k, lat_k, time = [], [], [], [], []
uu.append(u1)
vv.append(v1)
lat_k.append(la)
lon_k.append(lo)
time.append(date2num(startdate))
delete_id = []
for i in range(1, int(nsteps)):
# first, estimate the particle move to its new position using velocity of previous time steps
lat1 = lat_k[i - 1] + vv[i - 1] * daystep * 0.7769085
lon1 = lon_k[i - 1] + uu[i - 1] * daystep * 0.7769085 * scipy.cos(lat_k[i - 1] / 180 * np.pi)
# find the closest model time for the new timestep
jdmat_m_num_i = time[i - 1] + daystep
time.append(jdmat_m_num_i)
index_startdate_1 = int(round(np.interp(jdmat_m_num_i, jdmat_m_num, range(len(jdmat_m_num)))))
if del_index != []:
index_add = int(np.ceil(np.interp(index_startdate_1, del_index, range(len(del_index)))))
index_startdate = index_add + index_startdate_1
else:
index_startdate = index_startdate_1
# find the point's index of near lat1,lon1
index_location = nearxy(lon_vel_1, lat_vel_1, lon1, lat1)[1]
# calculate the model depth
depth_model = getdepth(lat_k[i - 1], lon_k[i - 1])
# get u and v
ui = u[index_startdate, idz, index_location]
vi = v[index_startdate, idz, index_location]
vv.append(vi)
uu.append(ui)
# estimate the particle move from its new position using velocity of previous time steps
lat_k.append((lat1 + lat_k[i - 1] + vv[i] * daystep * 0.7769085) / 2.0)
lon_k.append((lon1 + lon_k[i - 1] + uu[i] * daystep * 0.7769085 * scipy.cos(lat_k[i] / 180 * np.pi)) / 2.0)
if depth_model > 0:
delete_id.append(i)
# delete the depth is greater than 0
delete_id.reverse()
for i in delete_id:
del lat_k[i]
del lon_k[i]
del time[i]
del uu[i]
del vv[i]
if delete_id != []:
del lat_k[-1]
del lon_k[-1]
del time[-1]
del uu[-1]
del vv[-1]
return lat_k, lon_k, time, uu, vv
def getmodel(stime, etime, mlon, mlat, depth_i, modsdate, modedate, dataset): # after getmodel_GOMPOM_step1
tri = dataset["nv"]
jdmat_m = dataset["Times"]
while (stime < date2num(modsdate)) or (etime > date2num(modedate)):
print "sorry no model data available for that time"
sys.exit(0)
u = dataset["u"]
v = dataset["v"]
# zeta=dataset['zeta']
h = dataset["h"]
siglay = dataset["siglay"]
lat_array = dataset["lat"]
lon_array = dataset["lon"]
# get the lat & lon
lat_vel = [i for i in lat_array]
lon_vel = [i for i in lon_array]
# get the tri0,tri1,tri2 as the location of three points
tri0 = [i for i in tri[0]]
tri1 = [i for i in tri[1]]
tri2 = [i for i in tri[2]]
h_vel = [h_i for h_i in h]
lat_vel_1, lon_vel_1 = [], []
for i in range(len(tri0)):
if tri1[i] == len(lat_vel):
tri1[i] = len(lat_vel) - 1
if tri2[i] == len(lat_vel):
tri2[i] = len(lat_vel) - 1
lat_vel_1.append(float((lat_vel[tri0[i]] + lat_vel[tri1[i]] + lat_vel[tri2[i]])) / float(3))
lon_vel_1.append(float((lon_vel[tri0[i]] + lon_vel[tri1[i]] + lon_vel[tri2[i]])) / float(3))
# get the min distance
# if url=='http://www.smast.umassd.edu:8080/thredds/dodsC/fvcom/hindcasts/30yr_gom3':
# (distance,index_location) = nearxy(lon_vel,lat_vel,mlon,mlat)
# else:
print "finding index of this location"
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, mlon, mlat)
(disth, index_location_h) = nearxy(lon_vel, lat_vel, mlon, mlat)
print "making list of jdmat"
jdmat_m_list = list(jdmat_m)
print "removing the bad data from jdmat"
del_list, jdmat, del_index = [], [], []
for i in range(len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == "60": # delete the wrong data
del_list.append(jdmat_m_list[i])
del_index.append(i)
jdmat = [val for val in jdmat_m_list if val not in del_list]
jdmat_m_num = [] # this is the data in the form of a number
print "reformatting jdmat using strptime"
for i in jdmat:
jdmat_m_num.append(date2num(dt.datetime.strptime(i, "%Y-%m-%dT%H:%M:%S.%f")))
depths = h_vel[index_location_h] * siglay[:, index_location_h]
print "found the depths of the model at this location"
# get the ids of depths
depths_list = [depths[id] for id in range(0, len(depths))]
depths_list.reverse()
ids = range(len(depths_list))
ids.reverse()
idz = int(round(np.interp(depth_i, depths_list, ids)))
print "finding index of this date"
index_sdate = int(round(np.interp(stime, jdmat_m_num, range(len(jdmat_m_num)))))
index_edate = int(round(np.interp(etime, jdmat_m_num, range(len(jdmat_m_num)))))
del_index_idz = [i for i in range(len(del_index))]
if del_index_idz:
index_u_sdate = int(np.ceil(np.interp(index_sdate, del_index, del_index_idz)))
index_u_edate = int(np.ceil(np.interp(index_edate, del_index, del_index_idz)))
else:
index_u_sdate = 0
index_u_edate = 0
index_sdate1 = index_u_sdate + index_sdate
index_edate1 = index_u_edate + index_edate
v_part = v[index_sdate1:index_edate1, idz, index_location]
u_part = u[index_sdate1:index_edate1, idz, index_location]
time1 = num2date(jdmat_m_num[index_sdate:index_edate])
del_index.reverse()
v_list = [i for i in v_part]
u_list = [i for i in u_part]
# beginning of each month time is same, so delete
del_index_time = []
for i in range(1, len(time1)):
if time1[i - 1] == time1[i]:
del_index_time.append(i)
if del_index_time:
del u_list[del_index_time[0]]
del v_list[del_index_time[0]]
del time1[del_index_time[0]]
print "done getmodel function"
return time1, u_list, v_list, lat_vel, lon_vel
arr = np.sqrt(u_arr ** 2 + v_arr ** 2)
if u_arr.std() >= min_var:
c = mod_df(arr, timevar, istart, istop, mod_name, ts)
name = obs_df[n].name
model_df[n] = pd.concat([model_df[n], c], axis=1)
model_df[n].name = name
else:
print "min_var error"
else:
print "Max dist error"
if len(r) == 3:
# NECOFS
print ("[Structured grid model]:", url)
d = u[0, 0:1, :].data
# Find the closest non-land point from a structured grid model.
index, dd = nearxy(lon.flatten(), lat.flatten(), obs_lon, obs_lat)
# Keep the lat lon of the grid point
model_lat = lat[index].tolist()
model_lon = lon[index].tolist()
for n in range(nsta):
# Only use if model cell is within max_dist of station
if dd[n] <= max_dist:
u_arr = u[istart:istop, 0:1, index[n]].data
v_arr = v[istart:istop, 0:1, index[n]].data
# Model data is in m/s so convert to cm/s
arr = np.sqrt((u_arr * 100.0) ** 2 + (v_arr * 100.0) ** 2)
if u_arr.std() >= min_var:
c = mod_df(arr, timevar, istart, istop, mod_name, ts)
name = obs_df[n].name
for kk in range(len(obs_temp)):
obs_temp[kk] = f2c(obs_temp[kk]) # converts to Celcius
# now get the model output
urlfvcom = 'http://www.smast.umassd.edu:8080/thredds/dodsC/fvcom/hindcasts/30yr_gom3'
nc = netCDF4.Dataset(urlfvcom)
nc.variables
lat = nc.variables['lat'][:]
lon = nc.variables['lon'][:]
times = nc.variables['time']
jd = netCDF4.num2date(times[:], times.units)
vname = 'temp'
var = nc.variables[vname]
# find nearest point to desired location and time
inode = nearxy(lon, lat, loni, lati)
index = netCDF4.date2index(
[obs_dt[0], obs_dt[-1]], times,
select='nearest') #find the model time index at start & end pf obs
#plot them
fig = plt.figure(figsize=(16, 4))
ax = fig.add_subplot(111)
ax.plot_date(obs_dt, obs_temp, fmt='-')
plt.grid()
ax.plot_date(jd[index[0]:index[1]],
var[index[0]:index[1], 44, inode],
fmt='-',
color='red')
plt.ylabel(var.units)
plt.title('eMOLT site ' + site + ' temp vs FVCOM ' +
def getmodel(stime, etime, mlon, mlat, depth_i, modsdate, modedate,
dataset): # after getmodel_GOMPOM_step1
tri = dataset['nv']
jdmat_m = dataset['Times']
while (stime < date2num(modsdate)) or (etime > date2num(modedate)):
print "sorry no model data available for that time"
sys.exit(0)
u = dataset['u']
v = dataset['v']
# zeta=dataset['zeta']
h = dataset['h']
siglay = dataset['siglay']
lat_array = dataset['lat']
lon_array = dataset['lon']
#get the lat & lon
lat_vel = [i for i in lat_array]
lon_vel = [i for i in lon_array]
# get the tri0,tri1,tri2 as the location of three points
tri0 = [i for i in tri[0]]
tri1 = [i for i in tri[1]]
tri2 = [i for i in tri[2]]
h_vel = [h_i for h_i in h]
lat_vel_1, lon_vel_1 = [], []
for i in range(len(tri0)):
if tri1[i] == len(lat_vel):
tri1[i] = len(lat_vel) - 1
if tri2[i] == len(lat_vel):
tri2[i] = len(lat_vel) - 1
lat_vel_1.append(
float((lat_vel[tri0[i]] + lat_vel[tri1[i]] + lat_vel[tri2[i]])) /
float(3))
lon_vel_1.append(
float((lon_vel[tri0[i]] + lon_vel[tri1[i]] + lon_vel[tri2[i]])) /
float(3))
# get the min distance
# if url=='http://www.smast.umassd.edu:8080/thredds/dodsC/fvcom/hindcasts/30yr_gom3':
# (distance,index_location) = nearxy(lon_vel,lat_vel,mlon,mlat)
#else:
print 'finding index of this location'
(distance, index_location) = nearxy(lon_vel_1, lat_vel_1, mlon, mlat)
(disth, index_location_h) = nearxy(lon_vel, lat_vel, mlon, mlat)
print 'making list of jdmat'
jdmat_m_list = list(jdmat_m)
print 'removing the bad data from jdmat'
del_list, jdmat, del_index = [], [], []
for i in range(len(jdmat_m_list)):
if jdmat_m_list[i][17:19] == '60': #delete the wrong data
del_list.append(jdmat_m_list[i])
del_index.append(i)
jdmat = [val for val in jdmat_m_list if val not in del_list]
jdmat_m_num = [] # this is the data in the form of a number
print 'reformatting jdmat using strptime'
for i in jdmat:
jdmat_m_num.append(
date2num(dt.datetime.strptime(i, '%Y-%m-%dT%H:%M:%S.%f')))
depths = h_vel[index_location_h] * siglay[:, index_location_h]
print 'found the depths of the model at this location'
#get the ids of depths
depths_list = [depths[id] for id in range(0, len(depths))]
depths_list.reverse()
ids = range(len(depths_list))
ids.reverse()
idz = int(round(np.interp(depth_i, depths_list, ids)))
print 'finding index of this date'
index_sdate = int(
round(np.interp(stime, jdmat_m_num, range(len(jdmat_m_num)))))
index_edate = int(
round(np.interp(etime, jdmat_m_num, range(len(jdmat_m_num)))))
del_index_idz = [i for i in range(len(del_index))]
if del_index_idz:
index_u_sdate = int(
np.ceil(np.interp(index_sdate, del_index, del_index_idz)))
index_u_edate = int(
np.ceil(np.interp(index_edate, del_index, del_index_idz)))
else:
index_u_sdate = 0
index_u_edate = 0
index_sdate1 = index_u_sdate + index_sdate
index_edate1 = index_u_edate + index_edate
v_part = v[index_sdate1:index_edate1, idz, index_location]
u_part = u[index_sdate1:index_edate1, idz, index_location]
time1 = num2date(jdmat_m_num[index_sdate:index_edate])
del_index.reverse()
v_list = [i for i in v_part]
u_list = [i for i in u_part]
#beginning of each month time is same, so delete
del_index_time = []
for i in range(1, len(time1)):
if time1[i - 1] == time1[i]:
del_index_time.append(i)
if del_index_time:
del u_list[del_index_time[0]]
del v_list[del_index_time[0]]
del time1[del_index_time[0]]
print 'done getmodel function'
return time1, u_list, v_list, lat_vel, lon_vel