def getLandmarksFromFrame(self,image,detected_faces):
if len(detected_faces) == 0:
return []
centers = []
scales = []
for i, d in enumerate(detected_faces):
center = torch.FloatTensor(
[d[2] - (d[2] - d[0]) / 2.0, d[3] - (d[3] - d[1]) / 2.0])
center[1] = center[1] - (d[3] - d[1]) * 0.12
scale = (d[2] - d[0] + d[3] - d[1]) / 195
centers.append(center)
scales.append(scale)
inp = crop(image, center, scale)
inp = torch.from_numpy(inp.transpose(
(2, 0, 1))).float()
inp = inp.to(self.device)
inp.div_(255.0).unsqueeze_(0)
if i == 0:
imgs = inp
else:
imgs = torch.cat((imgs,inp), dim=0)
out = self.forward(imgs)
out = out[-1].cpu()
pts, pts_img = get_preds_fromhm(out, centers, scales)
#pts, pts_img = pts.view(68, 2) * 4, pts_img.view(68, 2)
#landmarks.append(pts_img.numpy())
return pts_img.numpy().tolist()
def get_one_example(all_coords, input_size, get_offsets, whole_images,
whole_labels, eval_tracker):
while True:
full_patch, full_labels = get_one_input(all_coords[index][::-1],
input_size, whole_images,
whole_labels)
seed = logit(utils.initial_seed(input_size))
for off in get_offsets(seed):
pred_seed = utils.crop(seed, off, FLAGS.fov_size)
patch = utils.crop(full_patch, off, FLAGS.fov_size)
labels = utils.crop(full_labels, off, FLAGS.fov_size)
assert pred_seed.base is seed
yield pred_seed, patch, labels
eval_tracker.eval_one_patch(full_labels, seed)
def _loss_mask(self, proto_output, pred_mask_coef, gt_bbox_norm, gt_masks, positiveness,
max_id_for_anchors, max_masks_for_train):
shape_proto = tf.shape(proto_output)
num_batch = shape_proto[0]
loss_mask = 0.
total_pos = 0
for idx in tf.range(num_batch):
# extract randomly postive sample in pred_mask_coef, gt_cls, gt_offset according to positive_indices
proto = proto_output[idx]
mask_coef = pred_mask_coef[idx]
mask_gt = gt_masks[idx]
bbox_norm = gt_bbox_norm[idx]
pos = positiveness[idx]
max_id = max_id_for_anchors[idx]
pos_indices = tf.squeeze(tf.where(pos == 1))
# tf.print("num_pos", tf.shape(pos_indices))
"""
if tf.size(pos_indices) == 0:
tf.print("detect no positive")
continue
"""
# Todo decrease the number pf positive to be 100
# [num_pos, k]
pos_mask_coef = tf.gather(mask_coef, pos_indices)
pos_max_id = tf.gather(max_id, pos_indices)
if tf.size(pos_indices) == 1:
# tf.print("detect only one dim")
pos_mask_coef = tf.expand_dims(pos_mask_coef, axis=0)
pos_max_id = tf.expand_dims(pos_max_id, axis=0)
total_pos += tf.size(pos_indices)
# proto = [80, 80, num_mask]
# pos_mask_coef = [num_pos, num_mask]
# pred_mask = proto x pos_mask_coef = [80, 80, num_pos]
# pred_mask transpose = [num_pos, 80, 80]
pred_mask = tf.linalg.matmul(proto, pos_mask_coef, transpose_a=False, transpose_b=True)
pred_mask = tf.transpose(pred_mask, perm=(2, 0, 1))
# calculating loss for each mask coef correspond to each postitive anchor
# pos_max_id = [num_pos]
gt = tf.gather(mask_gt, pos_max_id) # [num_pos, 80, 80]
bbox = tf.gather(bbox_norm, pos_max_id) # [num_pos, 4]
bbox_center = utils.map_to_center_form(bbox) # [num_pos, 4]
area = bbox_center[:, -1] * bbox_center[:, -2]
# crop the pred (not real crop, zero out the area outside the gt box)
s = tf.nn.sigmoid_cross_entropy_with_logits(gt, pred_mask) # [num_pos, 80, 80]
s = utils.crop(s, bbox, origin_w=80, origin_h=80) # [num_pos, 80, 80]
loss = tf.reduce_sum(s, axis=[1, 2]) / area # [num_pos]
loss_mask += tf.reduce_sum(loss)
loss_mask /= tf.cast(total_pos, tf.float32)
return loss_mask
def _loss_mask(self, protonet_output, pred_mask_coef, gt_bbox_norm,
gt_masks, positiveness, max_id_for_anchors,
max_masks_for_train):
shape_proto = tf.shape(protonet_output)
batch_size = shape_proto[0]
loss_mask = 0.
total_pos = 0
for idx in tf.range(batch_size):
# extract randomly postive sample in pred_mask_coef, gt_cls, gt_offset according to positive_indices
proto = protonet_output[idx]
mask_coef = pred_mask_coef[idx]
mask_gt = gt_masks[idx]
bbox_norm = gt_bbox_norm[idx]
pos = positiveness[idx]
max_id = max_id_for_anchors[idx]
pos_indices = tf.squeeze(tf.where(pos == 1))
# tf.print("num_pos", tf.shape(pos_indices))
# TODO: Limit number of positive to be less than max_masks_for_train
pos_mask_coef = tf.gather(mask_coef, pos_indices)
pos_max_id = tf.gather(max_id, pos_indices)
if tf.size(pos_indices) == 1:
# tf.print("detect only one dim")
pos_mask_coef = tf.expand_dims(pos_mask_coef, axis=0)
pos_max_id = tf.expand_dims(pos_max_id, axis=0)
total_pos += tf.size(pos_indices)
pred_mask = tf.linalg.matmul(proto,
pos_mask_coef,
transpose_a=False,
transpose_b=True)
pred_mask = tf.transpose(pred_mask, perm=(2, 0, 1))
# calculating loss for each mask coef correspond to each postitive anchor
gt = tf.gather(mask_gt, pos_max_id)
bbox = tf.gather(bbox_norm, pos_max_id)
bbox_center = utils.map_to_center_form(bbox)
area = bbox_center[:, -1] * bbox_center[:, -2]
# crop the pred (not real crop, zero out the area outside the gt box)
s = tf.nn.sigmoid_cross_entropy_with_logits(gt, pred_mask)
s = utils.crop(s, bbox)
loss = tf.reduce_sum(s, axis=[1, 2]) / area
loss_mask += tf.reduce_sum(loss)
loss_mask /= tf.cast(total_pos, tf.float32)
return loss_mask
def generate_sample_face(image,
landmarks,
detector,
input_resolution=256,
output_resolution=64):
num_landmarks = len(landmarks)
detected_faces = utils.get_face_bbox(image, detector)
outputs = list()
if len(detected_faces) > 0:
for i, rect in enumerate(detected_faces):
center = [(rect.left() + rect.right()) / 2,
(rect.top() + rect.bottom()) / 2]
center[1] = center[1] - (rect.bottom() - rect.top()) * 0.12
# scale = (rect.right() - rect.left() +
# rect.bottom() - rect.top()) / 195.0
scale = 2.0
cropped_image = utils.crop(image,
center,
scale,
resolution=input_resolution)
heatmaps = np.zeros(
(output_resolution, output_resolution, num_landmarks))
transformed_landmarks = []
for j in range(num_landmarks):
ldmk = utils.transform(landmarks[j] + 1,
center,
scale,
resolution=output_resolution)
transformed_landmarks.append(ldmk)
tmp = utils.draw_gaussian(heatmaps[:, :, j], ldmk, 1)
heatmaps[:, :, j] = tmp
outputs.append({
'image': cropped_image / 255,
'heatmaps': heatmaps,
'center': center,
'scale': scale,
'pts': transformed_landmarks
})
return outputs
def get_full_image(image_data):
all_channels = np.empty(
[cropped_img_size, cropped_img_size,
len(channels)])
for ch_idx, channel in enumerate(channels):
raw_img = utils.fetch_hdf5_sample(channel, image_data,
image_time_offset_idx)
if raw_img is None or raw_img.shape != (650, 1500):
return None
try:
array_cropped = utils.crop(copy.deepcopy(raw_img),
station_pixel_coords,
cropped_img_size)
except:
return None
# raw_data[array_idx, station_idx, channel_idx, ...] = cv.flip(array_cropped, 0) # TODO why the flip??
#array = (((array.astype(np.float32) - norm_min) / (norm_max - norm_min)) * 255).astype(np.uint8) # TODO norm?
array_cropped = array_cropped.astype(
np.float64) # convert to image format
all_channels[:, :, ch_idx] = array_cropped
return all_channels
def _loss_mask(self,
prior_max_index,
coef_p,
proto_p,
mask_gt,
prior_max_box,
conf_gt,
use_weight_sum=False,
use_cropped_mask=False):
shape_proto = tf.shape(proto_p)
proto_h = shape_proto[1]
proto_w = shape_proto[2]
num_batch = shape_proto[0]
loss_m = 0.0
mask_gt = tf.transpose(
mask_gt, (0, 2, 3, 1)) #[batch, height, width, num_object]
for i in tf.range(num_batch):
pos_indices = tf.where(conf_gt[i] > 0)
_pos_prior_index = tf.gather_nd(
prior_max_index[i], pos_indices) #shape: [num_positives]
_pos_prior_box = tf.gather_nd(prior_max_box[i],
pos_indices) #shape: [num_positives]
_pos_coef = tf.gather_nd(coef_p[i],
pos_indices) #shape: [num_positives]
_mask_gt = mask_gt[i]
if tf.shape(_pos_prior_index)[0] == 0: # num_positives are zero
continue
# If exceeds the number of masks for training, select a random subset
old_num_pos = tf.shape(_pos_coef)[0]
if old_num_pos > self._max_masks_for_train:
perm = tf.random.shuffle(tf.range(tf.shape(_pos_coef)[0]))
select = perm[:self._max_masks_for_train]
_pos_coef = tf.gather(_pos_coef, select)
_pos_prior_index = tf.gather(_pos_prior_index, select)
_pos_prior_box = tf.gather(_pos_prior_box, select)
num_pos = tf.shape(_pos_coef)[0]
_pos_mask_gt = tf.gather(_mask_gt, _pos_prior_index, axis=-1)
# mask assembly by linear combination
mask_p = tf.linalg.matmul(
proto_p[i], _pos_coef, transpose_a=False,
transpose_b=True) # [proto_height, proto_width, num_pos]
# crop the pred (not real crop, zero out the area outside the gt box)
if use_cropped_mask:
mask_p = utils.crop(
mask_p,
_pos_prior_box) # _pos_prior_box.shape: (num_pos, 4)
_pos_mask_gt = utils.crop(_pos_mask_gt, _pos_prior_box)
if use_weight_sum:
# The idea was borred from UNET weight loss function
# https://jaidevd.github.io/posts/weighted-loss-functions-for-instance-segmentation/
# It was modified to handle instance segmentation.
# Normalize the mask loss to emulate roi pooling's effect on loss.
# pos_get_csize = utils.map_to_center_form(_pos_prior_box)
# gt_box_width = pos_get_csize[:, 2] * tf.cast(proto_w, tf.float32)
# gt_box_height = pos_get_csize[:, 3] * tf.cast(proto_h, tf.float32)
# _area_pos = gt_box_width * gt_box_height
# _area_neg = (tf.cast(proto_h, tf.float32) * tf.cast(proto_w, tf.float32)) - _area_pos
weight_ip = tf.zeros(tf.shape(_pos_mask_gt), dtype=tf.float32)
w_1 = 1 - tf.reduce_sum(_pos_mask_gt, [0, 1]) / tf.cast(
tf.shape(weight_ip)[0] * tf.shape(weight_ip)[1],
tf.float32)
w_0 = 1 - w_1
w_1_index = tf.where(_pos_mask_gt == 1)
weight_sum = tf.tensor_scatter_nd_update(
weight_ip, w_1_index, tf.ones(tf.shape(w_1_index)[0])) * (
w_1) #*_area_neg/_area_pos)
w_0_index = tf.where(_pos_mask_gt == 0)
weight_ip = tf.tensor_scatter_nd_update(
weight_ip, w_0_index, tf.ones(
tf.shape(w_0_index)[0])) * w_0
weight_sum += weight_ip
mask_loss = tf.nn.weighted_cross_entropy_with_logits(
_pos_mask_gt, mask_p, weight_sum)
else:
mask_loss = tf.nn.sigmoid_cross_entropy_with_logits(
_pos_mask_gt, mask_p)
# Adding extra dimension as i/p and o/p shapes are different with "reduction" is set to None.
# https://github.com/tensorflow/tensorflow/issues/27190
# _pos_mask_gt = tf.transpose(_pos_mask_gt, (2,0,1))
# mask_p = tf.transpose(mask_p, (2,0,1))
# _pos_mask_gt = tf.reshape(_pos_mask_gt, [ -1, proto_h * proto_w])
# mask_p = tf.reshape(mask_p, [ -1, proto_h * proto_w])
# mask_loss = tf.keras.losses.binary_crossentropy(_pos_mask_gt, mask_p)
if old_num_pos > num_pos:
mask_loss *= tf.cast(old_num_pos / num_pos, tf.float32)
loss_m += tf.reduce_sum(mask_loss)
loss_m /= (tf.cast(proto_h, tf.float32) * tf.cast(proto_w, tf.float32))
return loss_m / tf.cast(num_batch, tf.float32)
def _loss_mask(self, proto_output, pred_mask_coef, gt_bbox_norm, gt_masks,
positiveness, max_id_for_anchors, max_masks_for_train):
shape_proto = tf.shape(proto_output)
num_batch = shape_proto[0]
proto_h = shape_proto[1]
proto_w = shape_proto[2]
loss_mask = 0.
total_pos = 0
for idx in tf.range(num_batch):
# extract randomly postive sample in prejd_mask_coef, gt_cls, gt_offset according to positive_indices
proto = proto_output[idx]
mask_coef = pred_mask_coef[idx]
mask_gt = gt_masks[idx]
bbox_norm = gt_bbox_norm[idx] # [100, 4] -> [num_obj, 4]
pos = positiveness[idx]
max_id = max_id_for_anchors[idx]
pos_indices = tf.squeeze(tf.where(pos == 1))
# If exceeds the number of masks for training, select a random subset
old_num_pos = tf.size(pos_indices)
# print("pos indices", pos_indices.shape)
if old_num_pos > max_masks_for_train:
perm = tf.random.shuffle(pos_indices)
pos_indices = perm[:max_masks_for_train]
pos_mask_coef = tf.gather(mask_coef, pos_indices)
pos_max_id = tf.gather(max_id, pos_indices)
# if only 1 positive or no positive
if tf.size(pos_indices) == 1:
pos_mask_coef = tf.expand_dims(pos_mask_coef, axis=0)
pos_max_id = tf.expand_dims(pos_max_id, axis=0)
elif tf.size(pos_indices) == 0:
continue
else:
...
# [num_pos, k]
gt = tf.gather(mask_gt, pos_max_id)
bbox = tf.gather(bbox_norm, pos_max_id)
# print(bbox[:5])
num_pos = tf.size(pos_indices)
# print('gt_me', gt.shape)
total_pos += num_pos
# [138, 138, num_pos]
pred_mask = tf.linalg.matmul(proto,
pos_mask_coef,
transpose_a=False,
transpose_b=True)
pred_mask = tf.transpose(pred_mask, perm=(2, 0, 1))
s = tf.nn.sigmoid_cross_entropy_with_logits(gt, pred_mask)
s = utils.crop(s, bbox)
# calculating loss for each mask coef correspond to each postitive anchor
bbox_center = utils.map_to_center_form(tf.cast(bbox, tf.float32))
area = bbox_center[:, -1] * bbox_center[:, -2]
mask_loss = tf.reduce_sum(s, axis=[1, 2]) / area
if old_num_pos > num_pos:
mask_loss = mask_loss * tf.cast(
(old_num_pos / num_pos), mask_loss.dtype)
loss_mask += tf.reduce_sum(mask_loss)
return loss_mask / tf.cast(total_pos, loss_mask.dtype)