def from_transcript(transcript, params):
"""It does workflow for creating sh-miR from transcript
Args:
transcript: name of NCBI transcript
params: dict with optional arguments:
* min_gc -- Minimal "GC" content in strand
default: 40
* max_gc -- Maximal "GC" content in strand
default: 60
* max_offtarget -- Maximal offtarget in strand
default: 10
* mirna_name -- The name of miRNA backbone to use
default: 'all'
* stymulators -- one of "yes", "no", "no_difference"
default: 'no_difference'
Returns:
None
"""
return wait_until_task(
creator("from_transcript_create", transcript,
params=params), lambda task_id, **kwargs: checker(
"from_transcript_check", task_id, **kwargs),
from_transcript_result)
def from_transcript(transcript, params):
"""It does workflow for creating sh-miR from transcript
Args:
transcript: name of NCBI transcript
params: dict with optional arguments:
* min_gc -- Minimal "GC" content in strand
default: 40
* max_gc -- Maximal "GC" content in strand
default: 60
* max_offtarget -- Maximal offtarget in strand
default: 10
* mirna_name -- The name of miRNA backbone to use
default: 'all'
* immuno -- one of "yes", "no", "no_difference"
default: 'no_difference'
Returns:
None
"""
return wait_until_task(
creator("from_transcript_create", transcript, params=params),
lambda task_id, **kwargs: checker("from_transcript_check", task_id, **kwargs),
from_transcript_result,
)
def mfold(sequence):
"""It does all workflow for mfold task
* creates task
* wait until it's done
* gets result(s)
Args:
sequence: Sequence which we would like to fold via mfold
Returns:
None
"""
return wait_until_task(
creator("mfold_create", sequence),
lambda task_id, **kwargs: checker("mfold_check", task_id, **kwargs),
mfold_result)
def from_sirna(sequences):
"""It does workflow for creating sh-miR from siRNA sequence(s)
* creates task
* wait until it's done
* gets result(s)
Args:
sequences: one siRNA strand (active) or two siRNA strands separated by space.
First strand is active, both are in 5-3 orientation.
Returns:
None
"""
return wait_until_task(
creator("from_sirna_create",
sequences), lambda task_id, **kwargs: checker(
"from_sirna_check", task_id, **kwargs), from_sirna_result)
def mfold(sequence):
"""It does all workflow for mfold task
* creates task
* wait until it's done
* gets result(s)
Args:
sequence: Sequence which we would like to fold via mfold
Returns:
None
"""
return wait_until_task(
creator("mfold_create", sequence),
lambda task_id, **kwargs: checker("mfold_check", task_id, **kwargs),
mfold_result,
)
def main(difficulty):
clock = pygame.time.Clock()
diff_gen(difficulty)
strs = utils.read_field('new_field.txt')
objects = []
cur = Cursor()
prev_sel = (0, 0)
screen_color = BLACK
for x in range(9):
row = []
for y in range(9):
elem = strs[x][y]
if '1' <= elem <= '9':
row.append(Number(int(elem), x, y, fixed=True))
else:
row.append(Number(None, x, y))
objects.append(row)
while True:
SCREEN.fill(screen_color)
events = pygame.event.get()
for event in events:
if event.type == pygame.QUIT or (event.type == pygame.KEYDOWN
and event.key == pygame.K_ESCAPE):
exit(0)
elif event.type == pygame.KEYDOWN and event.key == pygame.K_RETURN:
if utils.checker(strs):
screen_color = DARK_GREEN
else:
screen_color = DARK_RED
clock.tick(20)
cur.exist()
objects[prev_sel[0]][prev_sel[1]].selected = False
objects[cur.gx][cur.gy].selected = True
if not objects[cur.gx][
cur.gy].fixed and cur.number_pressed and cur.number:
if cur.number == 'd':
objects[cur.gx][cur.gy].number = None
strs[cur.gx][cur.gy] = 'X'
else:
objects[cur.gx][cur.gy].number = cur.number
strs[cur.gx][cur.gy] = cur.number
prev_sel = (cur.gx, cur.gy)
for row in objects:
for obj in row:
obj.exist()
pygame.display.flip()
def from_sirna(sequences):
"""It does workflow for creating sh-miR from siRNA sequence(s)
* creates task
* wait until it's done
* gets result(s)
Args:
sequences: one siRNA strand (active) or two siRNA strands separated by space.
First strand is active, both are in 5-3 orientation.
Returns:
None
"""
return wait_until_task(
creator("from_sirna_create", sequences),
lambda task_id, **kwargs: checker("from_sirna_check", task_id, **kwargs),
from_sirna_result,
)
def plot_plate(dataframe, parameter, config):
data = dataframe
coords = map(well_to_ij, data['Well Name'].values)
values = data[parameter].values
conditions = data['Condition'].values
matrix, missing_coords = to_plate_layout(coords, values)
if config['color'] == None:
plt.imshow(
checker(*matrix.shape) & ~np.isnan(matrix),
interpolation = 'nearest',
cmap = 'Greys',
aspect = 'auto',
vmin = 0,
vmax = 6);
else:
plt.imshow(
matrix,
interpolation = 'nearest',
cmap = config['color'],
aspect = 'auto',
vmin = config['vmin'],
vmax = config['vmax']);
plot_plate_ticks(matrix,xticks=config['xticks?'])
# Plot 'no data' for wells that don't have any data
[plot_plate_text(i,j,'No data') for i,j in missing_coords]
# Label wells with values, conditions, or nothing (empty strings)
show = config['show']
vs = {'Conditions': [format_long_line(c, 12) for c in conditions],
'Values': values,
'None': ['' for _ in values]}
formats = {'Conditions': '%s',
'Values': '%.2f',
'None': '%s'}
[plot_plate_text(i, j, v, format_string = formats[show]) \
for (i, j), v in zip(coords, vs[show])]
def plot_plate(dataframe, parameter, config):
data = dataframe
coords = map(well_to_ij, data['Well Name'].values)
values = data[parameter].values
conditions = data['Condition'].values
matrix, missing_coords = to_plate_layout(coords, values)
if config['color'] == None:
plt.imshow(
checker(*matrix.shape) & ~np.isnan(matrix),
interpolation = 'nearest',
cmap = 'Greys',
aspect = 'auto',
vmin = 0,
vmax = 6);
else:
plt.imshow(
matrix,
interpolation = 'nearest',
cmap = config['color'],
aspect = 'auto',
vmin = config['vmin'],
vmax = config['vmax']);
plot_plate_ticks(matrix,xticks=config['xticks?'])
# Plot 'no data' for wells that don't have any data
[plot_plate_text(i,j,'No data') for i,j in missing_coords]
# Label wells with values, conditions, or nothing (empty strings)
show = config['show']
vs = {'Conditions': [format_long_line(c, 12) for c in conditions],
'Values': values,
'None': ['' for _ in values]}
formats = {'Conditions': '%s',
'Values': '%.2f',
'None': '%s'}
[plot_plate_text(i, j, v, format_string = formats[show]) \
for (i, j), v in zip(coords, vs[show])]
params=get_params()
url=None
thumb=None
name=None
mode=None
try: url=urllib.unquote_plus(params["url"])
except: pass
try: thumb=urllib.unquote_plus(params["thumb"])
except: pass
try: name=urllib.unquote_plus(params["name"])
except: pass
try: mode=int(params["mode"])
except: pass
checker()
if mode==None or url==None or len(url)<1:
print "Versao Instalada: v" + versao
if selfAddon.getSetting('termos') == 'true':
mensagemaviso()
selfAddon.setSetting('termos',value='false')
canais()
if mode==1: menu_principal()
elif mode==2: replaytv()
elif mode==3: replaytv_lista(name,url)
elif mode==4: replaytv_progs(name,url)
elif mode==5: obter_lista(name,url)
elif mode==6: listascanais()
elif mode==7: descobrirresolver(url,nomecanal,linkrecebido,zapping)
elif mode==8: replaytv_play(name,url)
params=get_params()
url=None
thumb=None
name=None
mode=None
try: url=urllib.unquote_plus(params["url"])
except: pass
try: thumb=urllib.unquote_plus(params["thumb"])
except: pass
try: name=urllib.unquote_plus(params["name"])
except: pass
try: mode=int(params["mode"])
except: pass
checker()
if mode==None or url==None or len(url)<1:
print "Versao Instalada: v" + versao
if selfAddon.getSetting('termos') == 'true':
mensagemaviso()
selfAddon.setSetting('termos',value='false')
canais()
if mode==1: menu_principal()
elif mode==2: replaytv()
elif mode==3: replaytv_lista(name,url)
elif mode==4: replaytv_progs(name,url)
elif mode==5: obter_lista(name,url)
elif mode==6: listascanais()
elif mode==7: descobrirresolver(url,nomecanal,linkrecebido,zapping)
elif mode==8: replaytv_play(name,url)