def run_group_analysis(rest_session_list, anat_session_list, seed_list, c):
wfname = 'resting_preproc' + '_group_analysis'
workflow = pe.Workflow(name=wfname)
workflow.base_dir = c.workingDirectory
workflow.crash_dir = c.crashLogDirectory
workflow.config['execution'] = {'hash_method': 'timestamp'}
"""
FSL Group Analysis
"""
if c.derivatives[6]:
"""
grab the Group Analysis Data
"""
modelist, dervlist, labelist, template_dict, template_args = getGroupAnalysisInputs(c)
gp_flow = create_gp_dataflow(c.sinkDirectory, modelist,
dervlist, labelist, template_dict,
template_args, 'gpflow')
gppreproc = get_workflow('group_analysis', c)
workflow.connect(gp_flow, 'gpflow.mat',
gppreproc, 'inputspec.mat_file')
workflow.connect(gp_flow, 'gpflow.con',
gppreproc, 'inputspec.con_file')
workflow.connect(gp_flow, 'gpflow.fts',
gppreproc, 'inputspec.fts_file')
workflow.connect(gp_flow, 'gpflow.grp',
gppreproc, 'inputspec.grp_file')
workflow.connect(gp_flow, 'gpflow.derv',
gppreproc, 'inputspec.zmap_files')
gp_datasink = create_gp_datasink(c.sinkDirectory)
workflow.connect(gp_flow, 'inputnode.label', gp_datasink, 'container')
group_analysis_sink(workflow, gp_datasink, gppreproc)
gppreproc = get_workflow('group_analysis', c)
workflow.connect(gp_flow, 'gpflow.mat',
gppreproc, 'inputspec.mat_file')
workflow.connect(gp_flow, 'gpflow.con',
gppreproc, 'inputspec.con_file')
workflow.connect(gp_flow, 'gpflow.fts',
gppreproc, 'inputspec.fts_file')
workflow.connect(gp_flow, 'gpflow.grp',
gppreproc, 'inputspec.grp_file')
workflow.connect(gp_flow, 'gpflow.derv',
gppreproc, 'inputspec.zmap_files')
gp_datasink = create_gp_datasink(c.sinkDirectory)
workflow.connect(gp_flow, 'inputnode.label', gp_datasink, 'container')
group_analysis_sink(workflow, gp_datasink, gppreproc)
if(not c.runOnGrid):
workflow.run(plugin='MultiProc',
plugin_args={'n_procs': c.numCoresPerSubject})
else:
template_str = """
#!/bin/bash
#$ -S /bin/bash
#$ -V
"""
workflow.run(plugin='SGE',
plugin_args=dict(qsub_args=c.qsubArgs, template=template_str))