def download_unversioned_wgs(dest_dir, accession, output_format):
prefix = accession[:4]
if output_format is None:
output_format = utils.EMBL_FORMAT
public_set_url = utils.get_nonversioned_wgs_ftp_url(prefix, utils.PUBLIC, output_format)
if public_set_url is not None:
utils.get_ftp_file(public_set_url, dest_dir)
else:
supp_set_url = utils.get_nonversioned_wgs_ftp_url(prefix, utils.SUPPRESSED, output_format)
if supp_set_url is not None:
utils.get_ftp_file(supp_set_url, dest_dir)
else:
print 'No WGS set file available for {0}, format {1}'.format(accession, output_format)
print 'Please contact ENA ([email protected]) if you feel this set should be available'
def download_unversioned_wgs(dest_dir, accession, output_format):
prefix = accession[:4]
public_set_url = utils.get_nonversioned_wgs_ftp_url(
prefix, utils.PUBLIC, output_format)
if public_set_url is not None:
utils.get_ftp_file(public_set_url, dest_dir)
else:
supp_set_url = utils.get_nonversioned_wgs_ftp_url(
prefix, utils.SUPPRESSED, output_format)
if supp_set_url is not None:
utils.get_ftp_file(supp_set_url, dest_dir)
else:
print('No WGS set file available for {0}, format {1}'.format(
accession, output_format))
print(
'Please contact ENA (https://www.ebi.ac.uk/ena/browser/support) if you feel this set should be available'
)
def download_unversioned_wgs(dest_dir, accession, format):
prefix = accession[:4]
if format is None:
format = utils.EMBL_FORMAT
public_set_url = utils.get_nonversioned_wgs_ftp_url(prefix, utils.PUBLIC, format)
if public_set_url is not None:
utils.get_ftp_file(public_set_url, dest_dir)
else:
supp_set_url = utils.get_nonversion_supp_wgs_ftp_url(prefix, format)
if supp_set_url is not None:
utils.get_ftp_file(supp_set_url, dest_dir)
else:
print ('No WGS set file available for ' + accession + ', format ' + format)
print ('Please contact ENA ([email protected]) if you feel this set should be available')