def test_create_hoc():
mech = utils.make_mech()
parameters = utils.make_parameters()
hoc = create_hoc.create_hoc([mech, ], parameters, template_name='CCell')
nt.ok_('load_file' in hoc)
nt.ok_('CCell' in hoc)
nt.ok_('begintemplate' in hoc)
nt.ok_('endtemplate' in hoc)
def test_serialize():
parameters = utils.make_parameters()
for param in parameters:
serialized = param.to_dict()
nt.ok_(isinstance(json.dumps(serialized), str))
deserialized = instantiator(serialized)
nt.ok_(isinstance(deserialized, param.__class__))
nt.eq_(deserialized.name, param.__class__.__name__)
def test__generate_parameters():
parameters = utils.make_parameters()
section_params, range_params = create_hoc._generate_parameters(parameters)
nt.eq_(len(section_params[1]), 2)
nt.eq_(len(section_params[4]), 2)
nt.eq_(section_params[4][0], 'somatic')
nt.eq_(len(section_params[4][1]), 2)
def test_create_hoc():
"""ephys.create_hoc: Test create_hoc"""
mech = utils.make_mech()
parameters = utils.make_parameters()
hoc = create_hoc.create_hoc([mech, ], parameters, template_name='CCell')
nt.ok_('load_file' in hoc)
nt.ok_('CCell' in hoc)
nt.ok_('begintemplate' in hoc)
nt.ok_('endtemplate' in hoc)
def test__generate_parameters():
parameters = utils.make_parameters()
global_params, section_params, range_params = \
create_hoc._generate_parameters(parameters)
nt.eq_(global_params, {'NrnGlobalParameter': 65})
nt.eq_(len(section_params[1]), 2)
nt.eq_(len(section_params[4]), 2)
nt.eq_(section_params[4][0], 'somatic')
nt.eq_(len(section_params[4][1]), 2)
def test__generate_parameters():
parameters = utils.make_parameters()
global_params, section_params, range_params = \
create_hoc._generate_parameters(parameters)
nt.eq_(global_params, {'NrnGlobalParameter': 65})
nt.eq_(len(section_params[1]), 2)
nt.eq_(len(section_params[4]), 2)
nt.eq_(section_params[4][0], 'somatic')
nt.eq_(len(section_params[4][1]), 2)
def test__generate_parameters():
"""ephys.create_hoc: Test _generate_parameters"""
parameters = utils.make_parameters()
global_params, section_params, range_params = \
create_hoc._generate_parameters(parameters)
nt.assert_equal(global_params, {'NrnGlobalParameter': 65})
nt.assert_equal(len(section_params[1]), 2)
nt.assert_equal(len(section_params[4]), 2)
nt.assert_equal(section_params[4][0], 'somatic')
nt.assert_equal(len(section_params[4][1]), 2)
nt.assert_equal(range_params, [])
def test__generate_parameters():
"""ephys.create_hoc: Test _generate_parameters"""
parameters = utils.make_parameters()
global_params, section_params, range_params, location_order = \
create_hoc._generate_parameters(parameters)
nt.assert_equal(global_params, {'NrnGlobalParameter': 65})
nt.assert_equal(len(section_params[1]), 2)
nt.assert_equal(len(section_params[4]), 2)
nt.assert_equal(section_params[4][0], 'somatic')
nt.assert_equal(len(section_params[4][1]), 2)
nt.assert_equal(range_params, [])
nt.assert_equal(location_order, DEFAULT_LOCATION_ORDER)
def test_create_hoc_filename():
"""ephys.create_hoc: Test create_hoc template_filename"""
mech = utils.make_mech()
parameters = utils.make_parameters()
hoc = create_hoc.create_hoc([mech, ],
parameters, template_name='CCell',
template_filename='test.jinja2',
template_dir=os.path.join(
os.path.dirname(__file__),
'testdata'))
nt.ok_('load_file' in hoc)
nt.ok_('CCell' in hoc)
nt.ok_('begintemplate' in hoc)
nt.ok_('endtemplate' in hoc)
nt.ok_('Test template' in hoc)
def test_create_hoc_filename():
"""ephys.create_hoc: Test create_hoc template_filename"""
mech = utils.make_mech()
parameters = utils.make_parameters()
hoc = create_hoc.create_hoc([
mech,
],
parameters,
template_name='CCell',
template_filename='test.jinja2',
template_dir=os.path.join(
os.path.dirname(__file__), 'testdata'))
nt.ok_('load_file' in hoc)
nt.ok_('CCell' in hoc)
nt.ok_('begintemplate' in hoc)
nt.ok_('endtemplate' in hoc)
nt.ok_('Test template' in hoc)
def test_create_hoc_filename():
"""ephys.create_hoc: Test create_hoc template_filename"""
mech = utils.make_mech()
parameters = utils.make_parameters()
custom_param_val = 'printf("Hello world!")'
hoc = create_hoc.create_hoc([mech, ],
parameters, template_name='CCell',
template_filename='test.jinja2',
template_dir=os.path.join(
os.path.dirname(__file__),
'testdata'),
custom_jinja_params={
'custom_param': custom_param_val})
nt.ok_('load_file' in hoc)
nt.ok_('CCell' in hoc)
nt.ok_('begintemplate' in hoc)
nt.ok_('endtemplate' in hoc)
nt.ok_('Test template' in hoc)
nt.ok_(custom_param_val in hoc)