class TestClass(unittest.TestCase):
def setUp(self):
self.time = Time("08:00", "%H:%M")
def test(self):
# copy method
new_instance = self.time.copy()
self.assertIsInstance(new_instance, Time)
self.assertEqual(new_instance, self.time)
# change_to method
new_time = "08:01"
new_instance.change_to(new_time)
self.assertEqual(str(new_instance), new_time)
# add_time method
new_instance.add_time(1, 1)
self.assertEqual(str(new_instance), "09:02")
new_instance.add_time(-10, -3)
self.assertEqual(str(new_instance), "22:59")
# time_difference method
hours, minutes = self.time.time_difference(new_instance)
self.assertEqual((hours, minutes), (14, 59))
# str method
self.assertEqual(str(self.time), "08:00")
def calc_schedule_delay(self, tick):
early_time = self.pref_timing - Time.tick2min(tick)
late_time = Time.tick2min(tick) - self.pref_timing
if early_time > self.penalty_buffer:
return early_time * self.early_penalty
if late_time > self.penalty_buffer:
return late_time * self.late_penalty
return 0.0
def calc_schedule_delay(self, tick):
early_time = self.pref_timing - Time.tick2min(tick)
late_time = Time.tick2min(tick) - self.pref_timing
if early_time > self.penalty_buffer:
return early_time * self.early_penalty
if late_time > self.penalty_buffer:
return late_time * self.late_penalty
return 0.0
def test_config():
settings = {
# equivalent minutes of a tick
'TIMEUNIT': 20,
# the length of simulation
'TIMELENG': 1440,
# variance tolerance of preferred activitiy timing
'DELTA': 0.25 * 60.0,
# the link capacity
'CAPACITY_ped': 30000,
'CAPACITY_bus': 120,
'CAPACITY_sub': 1500,
# the equivalent utility of unit in-vehicle travel time
'ALPHA_in': 60.0,
# the equivalent utility of unit drive travel time
'ALPHA_drive': 60.0,
# the equivalent utility of unit waiting time
'ALPHA_wait': 120.0,
# the equivalent utility of unit walking time
'ALPHA_walk': 120.0,
# the equivalent utility of line transfering
'ALPHA_tran': 5.0,
# the equivalent utility of one dollar
'ALPHA_fare': 1.0,
# the unit cost of early arrival (dollar/hour)
'ALPHA_early': 0.0, # 30.0 * min2h
# the unit cost of late arrival (dollar/hour)
'ALPHA_late': 0.0, # 90.0 * min2h
# the unit cost of house rent
'ALPHA_rent': 1.0,
# the parameter related to residential location
'THETA_location': 0.002,
# the parameter related to making a trip or not
'THETA_travel': 0.005,
# the parameter related to pattern choice
'THETA_bundle': 0.008,
# the parameter related to tour choice
'THETA_tour': 0.01,
# the parameter related to path choice
# 'THETA_path: 0.1
# discount of future utility
'discount': 1.0,
# correlation between household members
# 1-dimension dict, i.e. corr[(person 1,person 2)]
'corr': {}
# activity name tokens
# 'tokens': {
# 'residence': 'home',
# 'business': 'work',
# 'school': 'school'
# }
}
# logger.debug(pformat(settings))
Config.init(settings)
Time.init(Config.TIMELENG, Config.TIMEUNIT)
def test_config():
settings = {
# equivalent minutes of a tick
'TIMEUNIT': 20,
# the length of simulation
'TIMELENG': 1440,
# variance tolerance of preferred activitiy timing
'DELTA': 0.25 * 60.0,
# the link capacity
'CAPACITY_ped': 30000,
'CAPACITY_bus': 120,
'CAPACITY_sub': 1500,
# the equivalent utility of unit in-vehicle travel time
'ALPHA_in': 60.0,
# the equivalent utility of unit drive travel time
'ALPHA_drive': 60.0,
# the equivalent utility of unit waiting time
'ALPHA_wait': 120.0,
# the equivalent utility of unit walking time
'ALPHA_walk': 120.0,
# the equivalent utility of line transfering
'ALPHA_tran': 5.0,
# the equivalent utility of one dollar
'ALPHA_fare': 1.0,
# the unit cost of early arrival (dollar/hour)
'ALPHA_early': 0.0, # 30.0 * min2h
# the unit cost of late arrival (dollar/hour)
'ALPHA_late': 0.0, # 90.0 * min2h
# the unit cost of house rent
'ALPHA_rent': 1.0,
# the parameter related to residential location
'THETA_location': 0.002,
# the parameter related to making a trip or not
'THETA_travel': 0.005,
# the parameter related to pattern choice
'THETA_bundle': 0.008,
# the parameter related to tour choice
'THETA_tour': 0.01,
# the parameter related to path choice
# 'THETA_path: 0.1
# discount of future utility
'discount': 1.0,
# correlation between household members
# 1-dimension dict, i.e. corr[(person 1,person 2)]
'corr': {}
# activity name tokens
# 'tokens': {
# 'residence': 'home',
# 'business': 'work',
# 'school': 'school'
# }
}
# logger.debug(pformat(settings))
Config.init(settings)
Time.init(Config.TIMELENG, Config.TIMEUNIT)
def test(self):
appts = self.schedule.appts
interpreters = self.cls.interpreters
# update_time_dict
time = Time("8:00", TIME_FORMAT)
self.cls.update_time_dict(time, appts)
td = self.cls.time_dict["08:00"]
self.assertEqual(td[0], appts[0])
td = self.cls.time_dict["08:25"]
self.assertEqual(td[0], appts[1])
td = self.cls.time_dict["08:45"]
self.assertEqual(td[0], appts[2])
# rev_update_time_dict
self.cls.time_dict = {}
time = Time("8:30", TIME_FORMAT)
self.cls.rev_update_time_dict(time, appts)
td = self.cls.time_dict["08:00"]
self.assertEqual(td[0], appts[0])
td = self.cls.time_dict["08:25"]
self.assertEqual(td[0], appts[1])
self.assertNotIn("08:45", self.cls.time_dict.keys())
# update_valid_choices
self.cls.appts_to_assign.append(appts[0])
self.cls.appts_to_assign.append(appts[1])
self.cls.jobs[interpreters[0]] = [self.cls.default_appt]
self.cls.assign(interpreters[0], appts[0])
self.cls.update_valid_choices(appts[0].finish, appts)
self.assertIn(appts[1], self.cls.valid_choices[interpreters[0]])
# rev_update_valid_choices
self.cls.rev_update_valid_choices(appts[2].finish, appts)
self.assertIn(appts[1], self.cls.valid_choices[interpreters[0]])
# next_valid_choice
self.cls.appts_to_assign.append(appts[0])
self.cls.jobs[interpreters[0]] = [self.cls.default_appt]
last_job = self.cls.get_last_job(interpreters[0])
time = last_job.finish
next_appt = self.cls.next_valid_choice(interpreters[0], time)
self.assertEqual(next_appt, appts[0])
def __init__(self, name, languages, gender, shift_start, shift_finish,
assignments):
"""
Initialize the Interpreter class
:param name: A string
:param languages: A list of strings representing languages spoken
:param gender: A string
:param shift_start: A string for the start time, eg.: "08:00"
:param shift_finish: A string for the finish time, eg.: "17:00"
:param assignments: A dictionary mapping building names to weights
"""
Person.__init__(self, name, languages, gender)
self.shift_start = Time(shift_start, TIME_FORMAT)
self.shift_finish = Time(shift_finish, TIME_FORMAT)
self.assignments = assignments
def __init__(self, id_, name, U0, Um, Sigma, Lambda, Xi, time_window, min_duration):
''' U0 is the baseline utility level of acivity.
Um is the maximum utility of activity.
Sigma determines the slope or steepness of the curve.
Lambda determines the relative position of the inflection point.
Xi determines the time of day at which the marginal utility reaches the maximum.
time_window is the interval of starting time for this activity (a 2-tuple).
min_duration is the minimum duration for this activity.
'''
# activity name
self.id, self.name = id_, name
# utility function parameters
self.U0, self.Um, self.Sigma, self.Lambda, self.Xi = U0, Um, Sigma, Lambda, Xi
# temproal constraints
self.time_window = (Time.min2tick(time_window[0]), Time.min2tick(time_window[1]))
self.min_duration = Time.min2tick(min_duration)
def dump_record():
"""
:return: 存储本次获取数据的日期信息、之后15天的开市日期
存放于DataStore中
"""
record_info_dict = {}
record_info_dict['now'] = Time.now()
pro = ts.pro_api()
record_info_dict['open'] = list(
pro.trade_cal(exchange='',
start_date=Time.now(),
end_date=Time.delta(15),
is_open='1').cal_date)
with open(RECORD_FILE, 'wb') as fw:
pickle.dump(record_info_dict, fw)
def discrete_util(self, tick, elapsed=0.0):
lower = Time.tick2min(tick) - Time.TIMEUNIT/2.0
upper = lower + Time.TIMEUNIT
if tick == 0:
util = fp.quad(self._marginal_util, [0.0, Time.TIMEUNIT/2.0]) + \
fp.quad(self._marginal_util, [Time.TIMELENG-Time.TIMEUNIT/2.0, Time.TIMELENG])
else:
util = fp.quad(self._marginal_util, [lower, upper])
return util
def __init__(self, id_, name, U0, Um, Sigma, Lambda, Xi, time_window,
min_duration):
''' U0 is the baseline utility level of acivity.
Um is the maximum utility of activity.
Sigma determines the slope or steepness of the curve.
Lambda determines the relative position of the inflection point.
Xi determines the time of day at which the marginal utility reaches the maximum.
time_window is the interval of starting time for this activity (a 2-tuple).
min_duration is the minimum duration for this activity.
'''
# activity name
self.id, self.name = id_, name
# utility function parameters
self.U0, self.Um, self.Sigma, self.Lambda, self.Xi = U0, Um, Sigma, Lambda, Xi
# temproal constraints
self.time_window = (Time.min2tick(time_window[0]),
Time.min2tick(time_window[1]))
self.min_duration = Time.min2tick(min_duration)
def discrete_util(self, tick, elapsed=0.0):
lower = Time.tick2min(tick) - Time.TIMEUNIT / 2.0
upper = lower + Time.TIMEUNIT
if tick == 0:
util = fp.quad(self._marginal_util, [0.0, Time.TIMEUNIT/2.0]) + \
fp.quad(self._marginal_util, [Time.TIMELENG-Time.TIMEUNIT/2.0, Time.TIMELENG])
else:
util = fp.quad(self._marginal_util, [lower, upper])
return util
def find_shortest_path(cls, net, depart_time, start, end=None):
if end != None and start == end:
return {end.id: (None, 0.0, depart_time)}
# creater a FIFO queue for searching
queue = deque()
# create containers with default values
cost = defaultdict(constant_factory(float('+inf')))
time = defaultdict(constant_factory(float('+inf')))
prev = defaultdict(None)
# set values for the start node
cost[start.id] = 0.0
time[start.id] = depart_time
queue.appendleft(start.id)
# continue until the queue is empty
while len(queue) > 0:
# pop out the first object in the queue
qtop = queue.pop()
node = net.nodes[qtop]
# relax each adjacent edges
for edge in node.adj_edges:
# get the traffic flow on the edge
if Time.lessthan_maxtick(time[node.id]):
edge_flow = net.flows[edge.id][time[node.id]]
else:
edge_flow = 0.0
# if the relaxation makes a shorter path
travel_time = edge.calc_travel_time(edge_flow)
travel_cost = edge.calc_travel_cost(travel_time)
if cost[edge.tail.id] > cost[node.id] + travel_cost:
# then update cost and time labels
cost[edge.tail.id] = cost[node.id] + travel_cost
time[edge.tail.id] = time[node.id] + travel_time
# and save the edge on the shortest path
prev[edge.tail.id] = edge
# and append the expanded node to the queue
queue.appendleft(edge.tail.id)
# if end node is given, extract the shortest path to end node recursively
if end != None:
# if the end node is reached, there is at least one path
# if the end node is not reached, the start and end nodes are not connected
path = cls.create_shortest_path(start, end, prev, time) if end.id in prev else None
return {end.id: (path, cost[end.id], time[end.id])}
else:
# if end node is not given, extract the shortest paths from start to all the other nodes
paths = cls.create_all_shortest_paths(start, prev, time)
# no path is defined for a ring and the travel time/cost is zero
tuples = {start.id: (None, 0.0, depart_time)}
for id_ in paths:
# wrap the path, cost and time in a tuple
# note that time[id_] is the arrival time at node[id_]
# that is, time[id_] = depart_time + travel_time
tuples[id_] = (paths[id_], cost[id_], time[id_])
return tuples
def __init__(self, idnum, start, duration_in_mins, patient, location,
priority, provider, interpreter):
"""
Initialize the Appointment class
:param idnum: An integer representing the appointment id number
:param start: A Time object of the appointment start time
:param duration_in_mins: The minutes from appointment start to finish
:param patient: A string representing patient name
:param location: A string representing the title of the location
:param priority: A number for the appointment weight
:param provider: A string representing the provider name
:param interpreter: A string representing the interpreter name
"""
self.idnum = idnum
self.start = Time(start, TIME_FORMAT)
self.duration = duration_in_mins
self.finish = Time(start, TIME_FORMAT)
self.finish.add_time(hours=0, minutes=duration_in_mins)
self.patient = patient
self.location = location
self.priority = priority
self.provider = provider
self.interpreter = interpreter
self.late_allowed = 0
def group_greedy(self,
interpreter_lists,
optimal,
balanced=False,
printing=False):
"""
Greedy heuristic on each sublist in the interpreter_lists
:param interpreter_lists:
:param optimal: A string, 'weight' or 'number', to optimize for
:param balanced: A Boolean whether to balance the load on employees
:param printing: A Boolean whether or not to print status messages
:return: A Schedule object
"""
self.reset()
current_interpreters = self.interpreters
if printing:
print(self.schedule.brief())
for interpreter_sublist in interpreter_lists:
if printing:
print("Greedy for " + str(
[interpreter.name
for interpreter in interpreter_sublist]) + "...")
self.interpreters = interpreter_sublist
if balanced:
self.create_balanced_greedy_schedule(
Time("00:00", TIME_FORMAT), printing)
else:
self.create_classic_greedy_schedule(Time("00:00", TIME_FORMAT),
optimal, printing)
if printing:
print(self.schedule.brief())
if printing:
print("Impact: ", self.schedule.calc_impact())
self.interpreters = current_interpreters
sched_copy = self.schedule.copy()
return sched_copy
def rev_update_valid_choices(self, time, appts):
"""
A dict of Appointment lists indexed to interpreters that can cover them
:param time: A Time object to direct self.rev_update_time_dict
:param appts: A list of Appointment objects
:return: None
"""
self.rev_update_time_dict(time, appts)
self.valid_choices = collections.defaultdict(list)
for interpreter in self.interpreters:
time_when_available = self.get_last_job(interpreter).finish
for appt_time, appt_list in self.time_dict.items():
if Time(appt_time, TIME_FORMAT) >= time_when_available:
for appt in appt_list:
if self.can_assign(interpreter, appt):
self.valid_choices[interpreter].append(appt)
def __init__(self, schedule):
"""
Initialize the Optimum class
:param schedule: A Schedule object
"""
BruteForce.__init__(self, schedule)
BruteForceDP.__init__(self, schedule)
Greedy.__init__(self, schedule)
MonteCarlo.__init__(self, schedule)
self.default_time = Time("6:00", TIME_FORMAT)
self.default_trials = 100
self.max_repeated_result = max(self.default_trials // 4, 1)
self.schedules = []
self.has_compared = False
self.schedule_methods = [
self.create_classic_greedy_schedule,
self.create_balanced_greedy_schedule,
self.create_bruteforce_schedule, self.create_bruteforce_assignment,
self.create_cached_assignment
]
def get_ipo(start_date):
"""
:param start_date: str, 开始日期
:return: 指定日期范围内的上市股票
ts_code 股票代码
sub_code 申购代码
name 名称
ipo_date 上网发行日期
issue_date 上市日期
amount 发行总量（万股）
market_amount 上网发行总量（万股）
price 发行价格
pe 市盈率
limit_amount 个人申购上限（万股）
funds 募集资金（亿元）
ballot 中签率
"""
pro = ts.pro_api()
ipo_data = pro.new_share(start_date=start_date)
return ipo_data[ipo_data.issue_date < Time.now()]
def main():
num_class = 100
num_particles = 5
num_iterations = 10
batch_size = 1000
algorithm = 'svgd'
data_path = r'D:\Users\Vishwesh\Datasets\cifar-100-python\cifar-100-python\train'
data_path = os.path.normpath(data_path)
meta_path = r'D:\Users\Vishwesh\Datasets\cifar-100-python\cifar-100-python\meta'
meta_path = os.path.normpath(meta_path)
# Load Meta data using pickle
meta_dict = unpickle(meta_path)
print(meta_dict.keys())
# Load Data using pickle
data_dict = unpickle(data_path)
print(data_dict.keys())
# Grab the Data and the fine labels
train_data = data_dict[b'data']
train_fine_labels = data_dict[b'fine_labels']
all_labels = np.eye(100)[train_fine_labels]
# Reshape the training data
images = list()
for d in train_data:
image = np.zeros((32,32,3), dtype=np.uint8)
image[...,0] = np.reshape(d[:1024], (32, 32)) # Red Channel
image[...,1] = np.reshape(d[1024:2048], (32, 32)) # Green Channel
image[...,2] = np.reshape(d[2048:], (32, 32)) # Blue Channel
images.append(image)
images = np.asarray(images, dtype=float)
images = images/255.0
x = tf.placeholder(tf.float32, shape=[None, 32, 32, 3])
y_true = tf.placeholder(tf.float32, shape=[None, num_class])
grads_list, vars_list, prob_1_x_w_list = [], [], []
for i in range(num_particles):
grads, vars, prob_1_x_w = network(x, y_true, 'p{}'.format(i))
grads_list.append(grads)
vars_list.append(vars)
prob_1_x_w_list.append(prob_1_x_w)
if algorithm == 'svgd':
optimizer = SVGD(grads_list=grads_list,
vars_list=vars_list,
make_gradient_optimizer=make_gradient_optimizer)
prob_1_x = tf.reduce_mean(tf.stack(prob_1_x_w_list), axis=0)
with tf.Session() as sess:
sess.run(tf.global_variables_initializer())
with Time("training"):
for _ in range(num_iterations):
for bs in range(0,len(images),batch_size):
start = bs
end_c = bs+batch_size
x_train = images[start:end_c]
y_train = all_labels[start:end_c]
cross_entropy = -tf.reduce_sum(y_true * tf.log(prob_1_x))
_, loss_val = sess.run([optimizer.update_op, cross_entropy], feed_dict={x: x_train, y_true: y_train})
print ('loss = ' + str(loss_val))
print('Debug here')
return None
def setUp(self):
self.time = Time("08:00", "%H:%M")
import sys
import os
import tushare as ts
import numpy as np
sys.path.append(os.path.join(os.getcwd(), '..'))
sys.path.append(os.path.join(os.getcwd(), '..', 'DataProcess'))
sys.path.append(os.path.join(os.getcwd(), '..', 'AutoTools'))
sys.path.append(os.path.join(os.getcwd(), '..', 'DataInput'))
from AutoEmail import TextEmail
from utils import Time
import pickle
today = Time.ex_now()
pro = ts.pro_api()
with open(os.path.join(os.getcwd(),'..','DataStore','stock_map.pkl'),'rb') as f:
stock_map = pickle.load(f)
dfSH = pro.hsgt_top10(trade_date = today, market_type='1',
fields = 'ts_code,name,rank,amount,net_amount,buy,sell')
dfSH = dfSH.sort_values('rank').drop(['rank'], axis = 1).\
reset_index(drop = True)
dfSZ = pro.hsgt_top10(trade_date = today, market_type='3',
fields = 'ts_code,name,rank,amount,net_amount,buy,sell')
dfSZ = dfSZ.sort_values('rank').drop(['rank'], axis = 1).\
reset_index(drop = True)
def calc_travel_time(self, flow):
if flow / self.capacity > 4.0:
print " !! %s: %s / %s > 4.0" % (self, flow, self.capacity)
# raise PendingDeprecationWarning('Street capacity excess (20x)! ')
travel_time = Time.min2tick(self.drive_time * (1.0 + 0.15 * math.pow(flow / self.capacity, 4.0)))
return travel_time
def calc_travel_time(self, flow):
if flow > self.capacity * 8:
print "%s: %s / %s" % (self, flow, self.capacity)
# raise PendingDeprecationWarning('Sidewalk capacity excess (8x)! ')
travel_time = Time.min2tick(self.walk_time * (1.0 + 0.15 * math.pow(flow / self.capacity, 4.0)))
return travel_time
# D[Log[(Exp[-(x+2)^2 / 2] / 3 + 2 / 3 Exp[-(x-2)^2 / 2]) / Sqrt[2 Pi]], x]
return - x - 4 / (2 * np.exp(4 * x) + 1) + 2
# hyper-parameters
num_particles = 100 # number of ensembles (SVGD particles)
num_iterations = 2000 # number of training iterations
learning_rate = 0.01
seed = 0
# random seeds
np.random.seed(seed)
model = GaussianMixtureModel()
with Time("Get initial particles"):
initial_xs = np.array(np.random.normal(-10, 1, (100, 1)), dtype=np.float32)
with Time("training & Get last particles"):
final_xs = SVGD().update(initial_xs, model.dlnprob, n_iter=num_iterations, stepsize=learning_rate)
initial_xs, final_xs = initial_xs.reshape(-1), final_xs.reshape(-1)
def plot():
fig = plt.figure(figsize=(5, 5))
ax = fig.add_subplot(111)
x_grid = np.linspace(-15, 15, 200)
initial_density = gaussian_kde(initial_xs)
ax.plot(x_grid, initial_density(x_grid), color='green', label='0th iteration')
ax.scatter(initial_xs, np.zeros_like(initial_xs), color='green')
def runTrain(sess,d,rnn,msg):
sess.run(tf.global_variables_initializer())
experiment='{}_{}_{}'.format(rnn.name,datanum,Time.now())
model_path="model/{}".format(experiment)
log_path="SAVE_Logs/{}.txt".format(experiment)
stat_path="SAVE_Logs/{}.stat".format(experiment)
logger=Logger(log_path)
stat={"tests":0}
stat_lowAbs={"dist":100}
total_number_of_batch=0
for number in trainRange:
total_number_of_batch+=d[number].numberBatch
total_number_of_batch_test=0
for number in testRange:
total_number_of_batch_test+=d[number].numberBatch
num_epoch=100
totalTime=Time()
for curr_epoch in range(0,num_epoch):
cost_sum=0
test_cost_sum=0
trainTime=Time()
for number in trainRange:
for index in range(d[number].numberBatch):
cost,_=rnn.Train(d[number]._MFCC[index],d[number]._LABEL[index],0.8)
cost_sum+=cost
avg_cost=cost_sum/total_number_of_batch
acc1=0.0
acc0=0.0
for number in trainRange:
for index in range(d[number].numberBatch):
ac1,ac0=rnn.Accuracy(d[number]._MFCC[index],d[number]._LABEL[index])
acc1+=ac1
acc0+=ac0
avg_train_accuracy= (acc1/total_number_of_batch+acc0/total_number_of_batch)/2
acc1=0.0
acc0=0.0
test_cost_sum=0
resultMatrix=np.zeros([2,2],int)
for number in testRange:
for index in range(d[number].numberBatch):
ac1,ac0=rnn.Accuracy(d[number]._MFCC[index],d[number]._LABEL[index])
test_cost_sum+=rnn.Cost(d[number]._MFCC[index],d[number]._LABEL[index])
resultMatrix+=rnn.return_ResultMatrix(d[number]._MFCC[index],d[number]._LABEL[index])
acc1+=ac1
acc0+=ac0
avg_test_accuracy= (acc1/total_number_of_batch_test+acc0/total_number_of_batch_test)/2
test_distance=np.abs(acc1/total_number_of_batch_test-acc0/total_number_of_batch_test)
avg_test_cost=test_cost_sum/total_number_of_batch_test
if(avg_test_accuracy>stat["tests"]):
stat['tests']=avg_test_accuracy
stat['trains']=avg_train_accuracy
stat['epoch']=curr_epoch
stat['cost']=avg_cost
stat['traincost']=avg_test_cost
stat['resultMatrix']=resultMatrix
stat['dist']=test_distance
rnn.Save(model_path)
if(test_distance<stat_lowAbs['dist']):
stat_lowAbs['tests']=avg_test_accuracy
stat_lowAbs['trains']=avg_train_accuracy
stat_lowAbs['epoch']=curr_epoch
stat_lowAbs['cost']=avg_cost
stat_lowAbs['traincost']=avg_test_cost
stat_lowAbs['resultMatrix']=resultMatrix
stat_lowAbs['dist']=test_distance
rnn.Save(model_path+'lowdist')
log="Epoch {}/{}, l_rate:{:.10f}, cost = {:>7.4f},train cost={:>7.4f}, accracy(train,test/best):({:.4f}, {:.4f}/{:.4f}), test_distance ={:.4f} ,time = {}/{}\n".format(
curr_epoch, num_epoch, rnn.learning_rate,avg_cost,avg_test_cost,
avg_train_accuracy,avg_test_accuracy,stat['tests'],test_distance ,trainTime.duration(), totalTime.duration())
logger.write(log)
summary ="""
{}.{}.{}
learning_rate : {} train_data_ratio : {} num_epoch : {} batch_size : {} windowsize : {} windowshift : {}
Best evaulation based on test_data : Accuracy_train : {} Accuracy_test : {} at epoch :{}
Best evaulation based on test_data at lowest distance : Accuracy_train : {} Accuracy_test : {} at epoch :{} \n
best Result Matrix : \n{}{}\n
best Reuslt Matrix at lowest distance : \n{}{}\n
""".format(
rnn.name,experiment,msg,
rnn.learning_rate, train_rate, num_epoch,a.batch_size,a.windowsize,a.windowstep,
stat["trains"],stat["tests"],stat['epoch'],stat_lowAbs['trains'],stat_lowAbs['tests'],stat_lowAbs['epoch'],
stat['resultMatrix'],matrixAccuracy(stat['resultMatrix']),stat_lowAbs['resultMatrix'],matrixAccuracy(stat_lowAbs['resultMatrix']))
print(summary)
logger.flush()
logger.close()
plot_static(log_path)
with open("SAVE_Logs/log.txt","a") as f:
f.write(summary)
def test(self):
# _cache_original_weights
weights = {
1: 85,
2: 215,
3: 85,
4: 213,
5: 215,
6: 115,
7: 215,
8: 115,
9: 212,
10: 105,
11: 215,
12: 215,
13: 95,
14: 115,
15: 125,
16: 215,
17: 205,
18: 85,
19: 215,
20: 115,
21: 115,
22: 205,
23: 205,
24: 212,
25: 215,
26: 215,
27: 115,
28: 95,
29: 212,
30: 205,
31: 195,
32: 222115,
33: 215,
34: 212,
35: 195,
36: 115,
37: 215,
38: 105,
39: 215,
40: 85,
41: 85,
42: 85,
43: 215,
44: 212,
45: 75,
46: 195,
47: 195,
48: 215,
49: 215,
50: 212
}
self.assertEqual(weights, self.cls.orig_weights)
# reset_weights
for appt in self.schedule.appts:
appt.priority = 0
self.assertEqual(0,
sum([appt.priority for appt in self.schedule.appts]))
self.cls.reset_weights()
for appt in self.schedule.appts:
idx = appt.idnum
self.assertEqual(appt.priority, weights[idx])
# update_weights
interpreter = self.schedule.interpreters[0]
interpreter.assignments = {
"Central Hospital": 3,
"West Wing": 2,
"East Wing": 3
}
self.cls.update_weights(interpreter)
for appt in self.schedule.appts:
idx = appt.idnum
if appt.location.building == "West Wing":
self.assertEqual(appt.priority, 2 * weights[idx])
else:
self.assertEqual(appt.priority, 3 * weights[idx])
# calculate_weights
appt_weights = {
0: 0,
1: 215,
2: 215,
3: 215,
4: 215,
5: 215,
6: 430,
7: 430,
8: 430,
9: 430,
10: 430,
11: 645,
12: 645,
13: 645,
14: 645,
15: 645,
16: 645,
17: 645,
18: 860,
19: 860,
20: 975,
21: 1065,
22: 1065,
23: 1072,
24: 1075,
25: 1290,
26: 1290,
27: 1385,
28: 1502,
29: 1502,
30: 1502,
31: 1505,
32: 1505,
33: 1597,
34: 1597,
35: 1597,
36: 1600,
37: 1607,
38: 1720,
39: 1720,
40: 1720,
41: 1720,
42: 1720,
43: 1720,
44: 1795,
45: 1915,
46: 1990,
47: 2010,
48: 2010,
49: 2222
}
#self.assertEqual(appt_weights, self.cls.appt_weights)
# compute_optimal
# in bf_ids_dict, the key means that the bf algorithm analyzed
# self.schedule.appts[:key + 1], meaning at key 0 there was only
# one appointment analyzed, at key 1, there were two analyzed,
# at key three, 0-2 indices were included in the analysis,
# and this continues for as many indices as in
# range(len(self.schedule.appts)),
bf_ids_dict = {
1: [2],
2: [2],
3: [2],
4: [2],
5: [2],
6: [2, 7],
7: [2, 7],
8: [2, 7],
9: [2, 7],
10: [2, 7],
11: [2, 7, 12],
12: [2, 7, 12],
13: [2, 7, 12],
14: [2, 7, 12],
15: [2, 7, 12],
16: [2, 7, 12],
17: [2, 7, 12],
18: [2, 7, 12, 19],
19: [2, 7, 12, 19],
20: [2, 7, 12, 19, 21],
21: [2, 7, 12, 19, 22],
22: [2, 7, 12, 19, 22],
23: [2, 7, 12, 19, 24],
24: [2, 7, 12, 19, 25],
25: [2, 7, 12, 19, 25, 26],
26: [2, 7, 12, 19, 25, 26],
27: [2, 7, 12, 19, 25, 26, 28],
28: [2, 7, 12, 19, 25, 26, 29],
29: [2, 7, 12, 19, 25, 26, 29],
30: [2, 7, 12, 19, 25, 26, 29],
31: [2, 7, 12, 19, 25, 26, 32],
32: [2, 7, 12, 19, 25, 26, 32],
33: [2, 7, 12, 19, 25, 26, 28, 34],
34: [2, 7, 12, 19, 25, 26, 28, 34],
35: [2, 7, 12, 19, 25, 26, 28, 34],
36: [2, 7, 12, 19, 25, 26, 28, 37],
37: [2, 7, 12, 19, 25, 26, 28, 37],
38: [2, 7, 12, 19, 25, 26, 33, 39],
39: [2, 7, 12, 19, 25, 26, 33, 39],
40: [2, 7, 12, 19, 25, 26, 33, 39],
41: [2, 7, 12, 19, 25, 26, 33, 39],
42: [2, 7, 12, 19, 25, 26, 33, 39],
43: [2, 7, 12, 19, 25, 26, 33, 39],
44: [2, 7, 12, 19, 25, 26, 33, 43, 45],
45: [2, 7, 12, 19, 25, 26, 33, 43, 46],
46: [2, 7, 12, 19, 25, 26, 33, 43, 45, 47],
47: [2, 7, 12, 19, 25, 26, 33, 43, 45, 48],
48: [2, 7, 12, 19, 25, 26, 33, 43, 45, 48],
49: [2, 7, 12, 19, 25, 26, 33, 43, 45, 49, 50]
}
def test_num(num):
ata = self.cls.appts_to_assign
appts = [
int(idnum)
for idnum in self.cls.compute_optimal(num, ata).split(", ")
]
appts.sort()
appts.pop(0)
co_ids = [self.cls.schedule.appts[idx].idnum for idx in appts]
bf_ids = bf_ids_dict[num]
bf_sum = sum(bf_appt.priority
for bf_appt in self.cls.get_jobs_with_ids(bf_ids))
co_sum = sum([
co_appt.priority
for co_appt in self.cls.get_jobs_with_ids(co_ids)
])
self.assertLessEqual(bf_sum, co_sum)
lst_assign = [
self.cls.can_assign(interpreter, co_appt)
for co_appt in self.cls.get_jobs_with_ids(co_ids)
]
self.assertTrue(all(lst_assign))
# Try an increasing index number
# First, reset the class instance
self.schedule = bf_test_schedule.copy()
self.cls = BruteForceDP(self.schedule)
self.cls.init_job(interpreter, self.cls.default_appt)
interpreter.shift_finish = Time("17:00", TIME_FORMAT)
# 1
test_num(1)
# 2
test_num(2)
# 3
test_num(3)
# 4
test_num(4)
# 5
test_num(5)
# 6
test_num(6)
# 7
test_num(7)
# 8
test_num(8)
# 9
test_num(9)
# 10
test_num(10)
# 11
test_num(11)
# 12
test_num(12)
# 13
test_num(13)
# 14
test_num(14)
# 15
test_num(15)
# 16
test_num(16)
# 17
test_num(17)
# 18
test_num(18)
# 19
test_num(19)
# 20
test_num(20)
# 21
test_num(21)
# 22
test_num(22)
# 23
test_num(23)
# 24
test_num(24)
# 25
test_num(25)
# 26
test_num(26)
# 27
test_num(27)
# 28
test_num(28)
# 29
test_num(29)
# 30
test_num(30)
# 31
test_num(31)
# 32
test_num(32)
# 33
test_num(33)
# 34
test_num(34)
# 35
test_num(35)
# 36
test_num(36)
# 37
test_num(37)
# 38
test_num(38)
# 39
test_num(39)
# 40
test_num(40)
# 41
test_num(41)
# 42
test_num(42)
# 43
test_num(43)
# 44
test_num(44)
# 45
test_num(45)
# 46
test_num(46)
# 47
test_num(47)
# 48
test_num(48)
# 49
test_num(49)
# gen_optimal
# reset test objects
self.schedule = bf_test_schedule.copy()
self.cls = BruteForceDP(self.schedule)
appts = self.cls.appts_to_assign
# create weights and compute optimal
self.cls.appt_weights = self.cls.calculate_weights(appts)
appt_weights = {
0: 0,
1: 215,
2: 215,
3: 215,
4: 215,
5: 215,
6: 430,
7: 430,
8: 430,
9: 430,
10: 430,
11: 645,
12: 645,
13: 645,
14: 645,
15: 645,
16: 645,
17: 645,
18: 860,
19: 860,
20: 975,
21: 1065,
22: 1065,
23: 1072,
24: 1075,
25: 1290,
26: 1290,
27: 1385,
28: 1502,
29: 1502,
30: 1502,
31: 1505,
32: 1505,
33: 1597,
34: 1597,
35: 1597,
36: 1600,
37: 1607,
38: 1720,
39: 1720,
40: 1720,
41: 1720,
42: 1720,
43: 1720,
44: 1795,
45: 1915,
46: 1990,
47: 2010,
48: 2010,
49: 2222
}
self.assertEqual(appt_weights, self.cls.appt_weights)
optimal = self.cls.compute_optimal(len(appts) - 1, appts)
self.assertEqual('49, 48, 44, 42, 32, 25, 24, 18, 11, 6, 1, 0',
optimal)
appt_idxs = [int(idx) for idx in optimal.split(sep=", ")]
self.assertEqual([49, 48, 44, 42, 32, 25, 24, 18, 11, 6, 1, 0],
appt_idxs)
appt_idxs.sort()
self.assertEqual([0, 1, 6, 11, 18, 24, 25, 32, 42, 44, 48, 49],
appt_idxs)
id_nums = [appts[idx].idnum for idx in appt_idxs]
self.assertEqual([1, 2, 7, 12, 19, 25, 26, 33, 43, 45, 49, 50],
id_nums)
self.assertEqual([1, 2, 7, 12, 19, 25, 26, 33, 43, 45, 49, 50],
self.cls.gen_optimal(appts))
# create_cached_schedule
self.schedule = bf_test_schedule.copy()
self.cls = BruteForceDP(self.schedule)
self.cls.init_job(interpreter, self.cls.default_appt)
appts = self.cls.appts_to_assign
self.assertEqual([1, 2, 7, 12, 19, 25, 26, 33, 43, 45, 49, 50],
self.cls.gen_optimal(appts))
ids = [2, 7, 12, 19, 25, 26, 33, 43, 45, 49, 50]
jobs = self.cls.get_jobs_with_ids(ids)
jobs = [self.cls.default_appt] + jobs
self.cls.create_cached_schedule(interpreter, appts)
self.assertEqual(self.cls.jobs[interpreter], jobs)
# create_cached_assignment
pass
class Appointment(object):
"""
An encounter with fixed start and end times, and one patient
"""
def __init__(self, idnum, start, duration_in_mins, patient, location,
priority, provider, interpreter):
"""
Initialize the Appointment class
:param idnum: An integer representing the appointment id number
:param start: A Time object of the appointment start time
:param duration_in_mins: The minutes from appointment start to finish
:param patient: A string representing patient name
:param location: A string representing the title of the location
:param priority: A number for the appointment weight
:param provider: A string representing the provider name
:param interpreter: A string representing the interpreter name
"""
self.idnum = idnum
self.start = Time(start, TIME_FORMAT)
self.duration = duration_in_mins
self.finish = Time(start, TIME_FORMAT)
self.finish.add_time(hours=0, minutes=duration_in_mins)
self.patient = patient
self.location = location
self.priority = priority
self.provider = provider
self.interpreter = interpreter
self.late_allowed = 0
def brief(self):
"""
Returns a briefer representation of class methods than __str__
:return: String
"""
temp_str = ""
separator_char = "|"
properties_lst = [
self.idnum, self.start, self.finish, self.patient,
self.location.coordinates, self.interpreter
]
num_iterated = 0
for val in properties_lst:
if len(temp_str) < 1:
temp_str = str(val)
else:
temp_str += str(val)
if num_iterated < (len(properties_lst) - 1):
temp_str += separator_char
num_iterated += 1
return temp_str
def copy(self):
return copy.deepcopy(self)
def distance_from(self, other):
"""
Distance from another Appointment using Pythagorean distance formula
:param other: Another Interval object compared to self
:return: A float representing distance
"""
dist = self.location.distance_from(other.location)
return dist
def overlaps_with(self, other):
appts = sorted([self, other])
return appts[0].finish <= appts[1].start
def is_compatible(self, other):
return self.overlaps_with(other)
def is_compatible_arrival(self, other):
"""
Test whether self and other are not overlapping appointments
:param other: An Appointment object
:return: Boolean indicating if they're compatible
"""
appts = [self, other]
appts.sort(key=attrgetter('start'), reverse=False)
first_appt = appts[0]
second_appt = appts[1]
arrival_time = calc_arrival(first_appt, second_appt)
second_time = second_appt.start.copy()
second_time.add_time(hours=0, minutes=self.late_allowed)
return arrival_time <= second_time
def calc_prior(self, others):
lst = copy.deepcopy(others)
lst.sort(key=attrgetter('finish'), reverse=False)
finish = [other.finish for other in others]
pos = bisect.bisect(finish, self.finish)
valid_others = [
other for other in others[:pos] if other.finish <= self.start
]
if valid_others:
return valid_others[-1]
def get_prior_num(self, others):
"""
Handle output of calc_prior, coercing None to 0
:param others: a list of Interval objects
:return: An integer idnum
"""
prior = self.calc_prior(others)
if prior is None:
prior_num = 0
else:
# prior_num = others.index(prior)
prior_num = prior.idnum
return prior_num
def __str__(self):
temp_str = ""
delimiter = "|"
num_keys_iterated = 0
attributes = self.__dict__
for key, val in attributes.items():
if len(temp_str) < 1:
temp_str = str(val)
else:
temp_str += str(val)
if num_keys_iterated < (len(attributes) - 1):
temp_str += delimiter
num_keys_iterated += 1
return temp_str
def __eq__(self, other):
if not isinstance(other, Appointment):
return False
return self.__dict__ == other.__dict__
def __ne__(self, other):
if not isinstance(other, Appointment):
return True
return self.__dict__ != other.__dict__
def __lt__(self, other):
"""
Facilitate sorting by start times by comparing Time objects
:param other: Another Interval object
:return: Boolean indicating comparison result
"""
if not isinstance(other, Appointment):
raise TypeError("'<' not supported between instances of '" +
typedef(self) + "' and other types")
return self.start < other.start
net = tf.layers.dense(net, 100, activation=tf.nn.tanh)
logits = tf.layers.dense(net, 1)
log_likelihood = -tf.nn.sigmoid_cross_entropy_with_logits(
labels=labels, logits=logits)
variables = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES,
scope=scope)
prob_1_x_w = tf.nn.sigmoid(logits)
gradients = tf.gradients(log_likelihood, variables)
return gradients, variables, prob_1_x_w
def make_gradient_optimizer():
return tf.train.AdamOptimizer(learning_rate=0.001)
with Time("graph construction"):
x_, y_ = tf.placeholder(tf.float32,
[None, 2]), tf.placeholder(tf.float32, [None, 1])
grads_list, vars_list, prob_1_x_w_list = [], [], []
for i in range(num_particles):
grads, vars, prob_1_x_w = network(x_, y_, 'p{}'.format(i))
grads_list.append(grads)
vars_list.append(vars)
prob_1_x_w_list.append(prob_1_x_w)
if algorithm == 'svgd':
optimizer = SVGD(grads_list=grads_list,
vars_list=vars_list,
make_gradient_optimizer=make_gradient_optimizer)
elif algorithm == 'ensemble':
import numpy as np
import sys
sys.path.insert(0, '..')
from references.svgd import SVGD as SVGD0
from optimizer import SVGD as SVGD1
from utils import Time
if __name__ == '__main__':
# hyper-parameters
num_particles = 100 # number of ensembles (SVGD particles)
seed = 0
# random seeds
np.random.seed(seed)
with Time("Get initial particles"):
initial_xs = np.array(np.random.normal(-10, 1, (300, 3)),
dtype=np.float32)
if len(initial_xs.shape) == 1:
initial_xs = initial_xs.reshape(-1, 1)
Kxy0, dxkxy0 = SVGD0.svgd_kernel(theta=initial_xs)
with tf.Session() as sess:
initial_xs_list = []
for x in initial_xs.tolist():
initial_xs_list.append(tf.constant(x, dtype=tf.float32))
Kxy1, dxkxy1 = sess.run(SVGD1.svgd_kernel(initial_xs_list))
print(np.linalg.norm(Kxy0))
print(np.linalg.norm(dxkxy0))
print(np.linalg.norm(Kxy1))
with tf.variable_scope(scope):
x = tf.Variable(initial_xs[eval(scope[1:])])
log_prob0, log_prob1 = tf_log_normal(x, -2., 1.), tf_log_normal(x, 2., 1.)
# log of target distribution p(x)
log_p = tf.reduce_logsumexp(tf.stack([log_prob0, log_prob1, log_prob1]), axis=0) - tf.log(3.)
variables = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=scope)
gradients = tf.gradients(log_p, variables)
return gradients, variables
def make_gradient_optimizer():
return AdagradOptimizer(learning_rate=learning_rate)
with Time("graph construction"):
initial_xs = np.array(np.random.normal(-10, 1, (100,)), dtype=np.float32)
grads_list, vars_list = [], []
for i in range(num_particles):
grads, vars = network('p{}'.format(i))
grads_list.append(grads)
vars_list.append(vars)
if algorithm == 'svgd':
optimizer = SVGD(grads_list=grads_list,
vars_list=vars_list,
make_gradient_optimizer=make_gradient_optimizer)
elif algorithm == 'ensemble':
optimizer = Ensemble(grads_list=grads_list,
vars_list=vars_list,
def calc_travel_time(self, flow):
if flow / self.capacity > 4.0:
print " !! %s: %s / %s > 4.0" % (self, flow, self.capacity)
# raise PendingDeprecationWarning('Street capacity excess (20x)! ')
travel_time = Time.min2tick(self.drive_time*(1.0 + .15*math.pow(flow/self.capacity, 4.0)))
return travel_time
def calc_travel_time(self, flow):
if flow > self.capacity * 8:
print "%s: %s / %s" % (self, flow, self.capacity)
# raise PendingDeprecationWarning('Sidewalk capacity excess (8x)! ')
travel_time = Time.min2tick(self.walk_time*(1.0 + .15*math.pow(flow/self.capacity, 4.0)))
return travel_time
def test(self):
# copy
copied = self.appt.copy()
self.assertIsInstance(copied, Appointment)
self.assertEqual(self.appt, copied)
# is_compatible
self.assertTrue(self.appt.is_compatible(self.appt2))
# distance_from
self.assertEqual(self.appt.distance_from(self.appt2), 5)
# brief
brief_str_appt = (str(self.appt.idnum) + "|" + str(self.appt.start) +
"|" + str(self.appt.finish) + "|" +
str(self.appt.patient) + "|" +
str(self.appt.location.coordinates) + "|" +
str(self.appt.interpreter))
actual = self.appt.brief()
self.assertEqual(brief_str_appt, actual)
# calc_prior
others = [appt1, appt2, appt3]
appt_to_test = appt3
appt_idx = others.index(appt_to_test)
self.assertEqual(2, appt_idx)
start = [interval.start for interval in others]
self.assertEqual([
Time("8:00", TIME_FORMAT),
Time("8:25", TIME_FORMAT),
Time("8:45", TIME_FORMAT)
], start)
finish = [interval.finish for interval in others]
self.assertEqual([
Time("8:10", TIME_FORMAT),
Time("9:05", TIME_FORMAT),
Time("9:25", TIME_FORMAT)
], finish)
# overlapping marks the next interval that would overlap,
# meaning that interval a.finish would be > than appt_to_test.start
overlapping = bisect.bisect(finish, start[appt_idx])
self.assertEqual(1, overlapping)
self.assertEqual(Time("9:05", TIME_FORMAT), finish[overlapping])
# appt_to_test.start. In order to satisfy the condition,
# we need a.finish < appt_to_test.start, so we exclude
# the appts that aren't compatible
compatible_copy = copy.deepcopy(others[:overlapping])
self.assertEqual([appt1], compatible_copy)
# We sort the indices of compatible appts in reverse order
# and test them for compatibility, until one is found.
# Doing so in reverse order ensures the compatible appt is
# the rightmost compatible appt
compatible_idx = [others.index(other) for other in compatible_copy]
compatible_idx.sort(reverse=True)
self.assertEqual([0], compatible_idx)
rightmost_compatible_appt = others[compatible_idx[-1]]
self.assertTrue(rightmost_compatible_appt.is_compatible(appt_to_test))
self.assertEqual(appt1, appt3.calc_prior(others))
# get_prior_num
long_appt = Appointment(299999, "7:00", 360, appt1.patient,
appt1.location, 10000, appt1.provider, "")
short_appt = Appointment(1000, "13:05", 1, appt1.patient,
appt1.location, 1000, appt1.provider, "")
others += [long_appt, short_appt]
self.assertEqual(others, [appt1, appt2, appt3, long_appt, short_appt])
prior = short_appt.calc_prior(others)
prior_idx = others.index(prior)
self.assertEqual(long_appt, prior)
self.assertEqual(prior_idx, 3)
self.assertIsNotNone(prior)
self.assertEqual(prior_idx, short_appt.get_prior_num(others))
# __str__
appt_str = ("1|08:00|10|08:10|" +
"Joe Spanish|('East Wing', 'Emergency Room')" +
"|100|Dr. John|Jose Gomez|0")
self.assertEqual(str(self.appt), appt_str)
# __hash__
expected_hash = id(self.appt)
actual_hash = self.appt.__hash__()
self.assertEqual(expected_hash, actual_hash)
# __eq__
copied_appt = self.appt.copy()
copied_appt.__dict__ = self.appt.__dict__
self.assertEqual(self.appt, copied_appt)
# __ne__
copied_appt = self.appt.copy()
copied_appt.idnum = 100
self.assertNotEqual(self.appt, copied_appt)
# __lt__
self.assertLess(appt1, appt2)
self.assertLess(appt2, appt3)
appt_lst1 = [appt3, appt2, appt1]
appt_lst2 = [appt2, appt3, appt1]
appt_lst1.sort()
appt_lst2.sort()
self.assertEqual(appt_lst1[0], appt1)
self.assertEqual(appt_lst1[-1], appt3)
self.assertEqual(appt_lst2[0], appt1)
self.assertEqual(appt_lst2[-1], appt3)