kwargs["index"] = False
kwargs["multicolumn_format"] = "c"
kwargs["multirow"] = True
kwargs["caption"] = f"Top {num_commits} Central Code Commits"
return dataframe_to_table(degree_data,
table_format,
wrap_table,
wrap_landscape=True,
**kwargs)
OPTIONAL_NUM_COMMITS: CLIOptionTy = make_cli_option(
"--num-commits",
type=int,
default=10,
required=False,
metavar="NUM",
help="Number of commits in the table.")
class TopCentralCodeCommitsTableGenerator(
TableGenerator,
generator_name="top-central-code-commits-table",
options=[REQUIRE_MULTI_CASE_STUDY, OPTIONAL_NUM_COMMITS]):
"""Generates a top-central-code-commits table for the selected case
study(ies)."""
def generate(self) -> tp.List[Table]:
case_studies: tp.List[CaseStudy] = self.table_kwargs.pop("case_study")
return [
raise NotImplementedError
class CIGArcPlotGenerator(PlotGenerator,
generator_name="cig-arc-plot",
options=[REQUIRE_CASE_STUDY, REQUIRE_REVISION]):
"""Generates an arc plot for a commit interaction graph."""
def generate(self) -> tp.List[Plot]:
return [
CommitInteractionGraphArcPlot(self.plot_config, **self.plot_kwargs)
]
OPTIONAL_SORT_METHOD: CLIOptionTy = make_cli_option(
"--sort-by",
type=click.Choice(["degree", "time"]),
default="degree",
required=False,
help="Sort method for commit interaction graph nodes.")
class CommitInteractionGraphNodeDegreePlot(Plot, plot_name='cig_node_degrees'):
"""
Plot node degrees of a commit interaction graph.
Additional arguments:
- sort: criteria to sort the revisions [degree, time]
"""
def plot(self, view_mode: bool) -> None:
sort = self.plot_kwargs["sort"]
case_study = self.plot_kwargs["plot_case_study"]
for k, v in bb.experiment.ExperimentRegistry.experiments.items()
if not is_experiment_excluded(k)
})
# ------------------------------------------------------------------------------
# Predefined CLI Options
# ------------------------------------------------------------------------------
REQUIRE_CASE_STUDY: CLIOptionTy = convert_value(
"case_study", CaseStudyConverter
)(
make_cli_option(
"-cs",
"--case-study",
type=create_single_case_study_choice(),
required=True,
metavar="NAME",
help="The case study to use."
)
)
REQUIRE_MULTI_CASE_STUDY: CLIOptionTy = convert_value(
"case_study", CaseStudyConverter
)(
make_cli_option(
"-cs",
"--case-study",
type=create_multi_case_study_choice(),
required=True,
metavar="NAMES",
help="One or more case studies to use."
)
class CommonTableOptions():
"""
Options common to all tables.
These options are handled by the :class:`TableGenerator` base class and are
not passed down to specific table generators.
Args:
view: if `True`, view the table instead of writing it to a file
table_dir: directory to write tables to
(relative to config value 'tables/table_dir')
table_format: the format for the written table file
dry_run: if ``True``, do not generate any files
"""
def __init__(
self, view: bool, table_dir: Path, table_format: TableFormat,
wrap_table: bool, dry_run: bool
):
self.view = view
# Will be overridden when generating artefacts
self.table_base_dir = Path(str(vara_cfg()['tables']['table_dir']))
self.table_dir = table_dir
self.table_format = table_format
self.wrap_table = wrap_table
self.dry_run = dry_run
@staticmethod
def from_kwargs(**kwargs: tp.Any) -> 'CommonTableOptions':
"""Construct a ``CommonTableOptions`` object from a kwargs dict."""
table_format = kwargs.get("table_format", TableFormat.PLAIN)
if isinstance(table_format, str):
table_format = TableFormat[table_format]
return CommonTableOptions(
kwargs.get("view", False), Path(kwargs.get("table_dir", ".")),
table_format, kwargs.get("wrap_table", False),
kwargs.get("dry_run", False)
)
__options = [
make_cli_option(
"-v",
"--view",
is_flag=True,
help="View the table instead of saving it to a file."
),
make_cli_option(
"--table-dir",
type=click.Path(path_type=Path),
default=Path("."),
help="Set the directory the tables will be written to "
"(relative to config value 'tables/table_dir')."
),
make_cli_option(
"--table-format",
type=EnumChoice(TableFormat, case_sensitive=False),
default="PLAIN",
help="Format for the table."
),
make_cli_option(
"--wrap-table",
type=bool,
default=False,
help="Wrap tables inside a complete latex document."
),
make_cli_option(
"--dry-run",
is_flag=True,
help="Only log tables that would be generated but do not "
"generate."
"Useful for debugging table generators."
),
]
@classmethod
def cli_options(cls, command: tp.Any) -> tp.Any:
"""
Decorate a command with common table CLI options.
This function can be used as a decorator.
Args:
command: the command to decorate
Returns:
the decorated command
"""
return add_cli_options(command, *cls.__options)
def get_dict(self) -> tp.Dict[str, tp.Any]:
"""
Create a dict representation for this object.
It holds that
``options == CommonTableOptions.from_kwargs(**options.get_dict())``.
Returns:
a dict representation of this object
"""
return {
"view": self.view,
"table_format": self.table_format.name,
"wrap_table": self.wrap_table,
"table_dir": self.table_dir,
"dry_run": self.dry_run
}
from varats.revision.revisions import get_processed_revisions_files
from varats.table.table import Table
from varats.table.table_utils import dataframe_to_table
from varats.table.tables import TableFormat, TableGenerator
from varats.ts_utils.cli_util import CLIOptionTy, make_cli_option
from varats.ts_utils.click_param_types import (
REQUIRE_CASE_STUDY,
REQUIRE_MULTI_CASE_STUDY,
)
LOG = logging.Logger(__name__)
REQUIRE_GROUND_TRUTH: CLIOptionTy = make_cli_option(
"-gt",
"--ground-truth",
type=str,
required=True,
metavar="PATHS",
help="One or more ground truths to use."
)
OPTIONAL_FEATURES: CLIOptionTy = make_cli_option(
"--features",
type=str,
required=False,
metavar="FEATURES",
help="The features to use explicitly."
)
def filter_report_paths_binary(
report_files: tp.List[Path], binary: ProjectBinaryWrapper
class CommonPlotOptions():
"""
Options common to all plots.
These options are handled by the :class:`PlotGenerator` base class and are
not passed down to specific plot generators.
Args:
view: if `True`, view the plot instead of writing it to a file
plot_dir: directory to write plots to
(relative to config value 'plots/plot_dir')
file_type: the file type for the written plot file
dry_run: if ``True``, do not generate any files
"""
def __init__(self, view: bool, plot_dir: Path, file_type: str,
dry_run: bool):
self.view = view
# Will be overridden when generating artefacts
self.plot_base_dir = Path(str(vara_cfg()['plots']['plot_dir']))
self.plot_dir = plot_dir
self.file_type = file_type
self.dry_run = dry_run
@staticmethod
def from_kwargs(**kwargs: tp.Any) -> 'CommonPlotOptions':
"""Construct a ``CommonPlotOptions`` object from a kwargs dict."""
return CommonPlotOptions(kwargs.get("view", False),
Path(kwargs.get("plot_dir", ".")),
kwargs.get("file_type", "svg"),
kwargs.get("dry_run", False))
__options = [
make_cli_option("-v",
"--view",
is_flag=True,
help="View the plot instead of saving it to a file."),
make_cli_option("--file-type",
type=click.Choice(["png", "svg", "pdf"]),
default="svg",
help="File type for the plot."),
make_cli_option("--plot-dir",
type=click.Path(path_type=Path),
default=Path("."),
help="Set the directory the plots will be written to "
"(relative to config value 'plots/plot_dir')."),
make_cli_option(
"--dry-run",
is_flag=True,
help="Only log plots that would be generated but do not generate."
"Useful for debugging plot generators."),
]
@classmethod
def cli_options(cls, command: tp.Any) -> tp.Any:
"""
Decorate a command with common plot CLI options.
This function can be used as a decorator.
Args:
command: the command to decorate
Returns:
the decorated command
"""
return add_cli_options(command, *cls.__options)
def get_dict(self) -> tp.Dict[str, tp.Any]:
"""
Create a dict representation for this object.
It holds that
``options == CommonPlotOptions.from_kwargs(**options.get_dict())``.
Returns:
a dict representation of this object
"""
return {
"view": self.view,
"file_type": self.file_type,
"plot_dir": self.plot_dir,
"dry_run": self.dry_run
}
REQUIRE_REPORT_TYPE,
REQUIRE_CASE_STUDY,
)
from varats.utils.git_util import ShortCommitHash, FullCommitHash
SUCCESS_COLOR = (0.5568627450980392, 0.7294117647058823, 0.25882352941176473)
BLOCKED_COLOR = (0.20392156862745098, 0.5411764705882353, 0.7411764705882353)
FAILED_COLOR = (0.8862745098039215, 0.2901960784313726, 0.2)
COMPILE_ERROR_COLOR = (0.8862745098039215, 0.2901960784313726, 0.2)
MISSING_COLOR = (0.984313725490196, 0.7568627450980392, 0.3686274509803922)
BACKGROUND_COLOR = (0.4666666666666667, 0.4666666666666667, 0.4666666666666667)
OPTIONAL_SHOW_BLOCKED: CLIOptionTy = make_cli_option(
"--show-blocked/--hide-blocked",
type=bool,
default=True,
required=False,
metavar="show_blocked",
help="Shows/hides blocked revisions.")
OPTIONAL_SHOW_ALL_BLOCKED: CLIOptionTy = make_cli_option(
"--show-all-blocked/--hide-all-blocked",
type=bool,
default=False,
required=False,
metavar="show_all_blocked",
help="Shows/hides all blocked revisions.")
def _gen_overview_data(tag_blocked: bool,
**kwargs: tp.Any) -> tp.Dict[str, tp.List[int]]:
data.sort_values("score", inplace=True)
data.sort_index(level="fix", sort_remaining=False, inplace=True)
kwargs: tp.Dict[str, tp.Any] = {}
if table_format.is_latex():
kwargs["multicolumn_format"] = "c"
kwargs["longtable"] = True
return dataframe_to_table(
data, table_format, wrap_table, wrap_landscape=True, **kwargs
)
REQUIRE_SZZ_TOOL: CLIOptionTy = make_cli_option(
"--szz-tool",
type=EnumChoice(SZZTool, case_sensitive=False),
required=True,
help="The SZZ tool for which to show the data."
)
class SZZQualityMetricsTableGenerator(
TableGenerator,
generator_name="szz-quality-metrics-table",
options=[REQUIRE_MULTI_CASE_STUDY, REQUIRE_SZZ_TOOL]
):
"""Generates a szz-quality-metrics table for the selected case study."""
def generate(self) -> tp.List[Table]:
case_studies: tp.List[CaseStudy] = self.table_kwargs.pop("case_study")
return [
from varats.plot.plot import Plot, PlotDataEmpty
from varats.plot.plot_utils import align_yaxis, pad_axes
from varats.plot.plots import PlotGenerator
from varats.plots.scatter_plot_utils import multivariate_grid
from varats.ts_utils.cli_util import CLIOptionTy, make_cli_option
from varats.ts_utils.click_param_types import (
EnumChoice,
REQUIRE_MULTI_CASE_STUDY,
)
from varats.utils.git_util import FullCommitHash
LOG = logging.getLogger(__name__)
REQUIRE_X_METRIC: CLIOptionTy = make_cli_option(
"--var-x",
type=EnumChoice(BlameDiffMetrics, case_sensitive=False),
required=True,
help="The metric shown on the x-axis of the distribution comparison plot.")
REQUIRE_Y_METRIC: CLIOptionTy = make_cli_option(
"--var-y",
type=EnumChoice(BlameDiffMetrics, case_sensitive=False),
required=True,
help="The metric shown on the y-axis of the distribution comparison plot.")
def annotate_correlation(
x_values: tp.List[int],
y_values: tp.List[int],
ax: axes.SubplotBase = None,
# pylint: disable=unused-argument