def __init__(self, variant_details, evidence_items):
"Constructor"
# Exist columns
self.gene_name = None
self.entrez_id = None
self.variant_name = None
self.disease_name = None
self.doid = None
self.drug_names = None
self.evi_type = None
self.evi_dir = None
self.cli_sig = None
self.evi_summary = None
self.pub_id = None
self.citation = None
self.rating = None
# Added columns
self.evi_status = None
self.evi_id = None
self.var_id = None
self.gene_id = None
self.coordinates = None
self.var_summary = None
self.var_ori = None
self.evidence_civic_url = EvidenceItems.define_evidence_url(variant_details,evidence_items)
self.variant_civic_url = VariantDetails.define_civic_url(variant_details)
self.gene_civic_url = self.define_gene_url(variant_details)
self.parse_variant_details(variant_details)
self.parse_evidence_details(evidence_items)
def __init__(self, variant_details, evidence_items, error_type):
"Constructor"
self.error = str(error_type)
self.variant_id = None
self.variant_name = None
self.gene_name = None
self.evi_id = None
self.evi_type = None
self.doid = None
self.parse_variant_details(variant_details)
self.parse_evidence_details(evidence_items)
self.evidence_civic_url = self.define_evidence_url(variant_details,evidence_items)
self.variant_civic_url = VariantDetails.define_civic_url(variant_details)