def regulation_target_enrichment(self, locus_identifier, are_ids=False):
from src.sgd.model.nex.evidence import Regulationevidence
from src.sgd.backend.nex import view_go
if are_ids:
locus_id = locus_identifier
else:
locus_id = get_obj_id(locus_identifier, class_type='BIOENTITY', subclass_type='LOCUS')
target_ids = set([x.locus2_id for x in DBSession.query(Regulationevidence).filter_by(locus1_id=locus_id).all()])
if len(target_ids) > 0:
return json.dumps(view_go.make_enrichment(target_ids))
else:
return '[]'
def domain_enrichment(self, domain_identifier, are_ids=False):
from src.sgd.model.nex.evidence import Domainevidence
from src.sgd.backend.nex import view_go
if are_ids:
domain_id = domain_identifier
else:
domain_id = get_obj_id(domain_identifier, class_type='BIOITEM', subclass_type='DOMAIN')
target_ids = set([x.locus_id for x in DBSession.query(Domainevidence).filter_by(domain_id=domain_id).all()])
if len(target_ids) > 0:
return json.dumps(view_go.make_enrichment(target_ids))
else:
return '[]'
def go_enrichment(self, bioent_ids):
from src.sgd.backend.nex import view_go
return json.dumps(view_go.make_enrichment(bioent_ids))
