def convert(self, work_id):
work = self.db.publication(work_id)
if (work['status'] == 'Work in progress'
or work['type'] == 'Other output'):
return
if work['type'] == 'Scientific position':
# TODO: position should be added to a person, it's not a work
return
elif work['type'] == 'Journal editorship - referee':
# TODO: seems more like a role, same with book editorship
return
work_uri = NS.viveur['work-%s' % work['id']]
predicates = {}
predicates[NS.rdf.type] = uris(VIVOTYPES[work['type']])
if work['title']:
predicates[NS.rdfs.label] = literals(work['title'],
datatype=NS.xsd.string)
predicates[NS.dcterms.title] = literals(work['title'],
datatype=NS.xsd.string)
if work['publisher_loc']:
predicates[NS.core.placeOfPublication] = literals(
work['publisher_loc'])
if work['publisher']:
predicates[NS.core.publisher] = literals(work['publisher'])
if work['start_page']:
predicates[NS.bibo.pageStart] = literals(work['start_page'],
datatype=NS.xsd.string)
if work['end_page']:
predicates[NS.bibo.pageEnd] = literals(work['end_page'],
datatype=NS.xsd.string)
if work['num_pages']:
predicates[NS.bibo.numPages] = literals(work['num_pages'])
if work['volume']:
predicates[NS.bibo.volume] = literals(work['volume'],
datatype=NS.xsd.string)
if work['issue']:
predicates[NS.bibo.volume] = literals(work['issue'],
datatype=NS.xsd.string)
if work['abstract']:
predicates[NS.bibo.abstract] = literals(work['abstract'],
datatype=NS.xsd.string)
if work['issued_year']:
dt_uri = NS.viveur['datetime-%s' % work['id']]
predicates[NS.core.dateTimeValue] = uris(dt_uri)
self.graph[dt_uri] = {
NS.rdf.type:
uris(NS.core.DateTimeValue),
NS.core.dateTimePrecision:
uris(NS.core.yearPrecision),
NS.core.dateTime:
literals('%s-01-01T00:00:00' % work['issued_year'],
datatype=NS.xsd.dateTime)
}
urls = [url for url in (work['url'], work['repository_url']) if url]
for url in urls:
if url.startswith('http://dx.doi.org'):
predicates[NS.bibo.doi] = literals(url.replace(
'http://dx.doi.org/', 'doi:'),
datatype=NS.xsd.anyURI)
elif url.startswith('http://hdl.handle.net'):
predicates[NS.bibo.handle] = literals(url.replace(
'http://hdl.handle.net/', 'hdl:'),
datatype=NS.xsd.anyURI)
if urls:
predicates[NS.core.linkURI] = literals(*urls,
datatype=NS.xsd.anyURI)
for rank, author in enumerate(work['author']):
person_uri = NS.viveur['person-%s' % author['researcher_id']]
author_uri = NS.viveur['author-%s-%s' % (work_id, rank + 1)]
if rank == 0:
predicates[NS.dcterms.created] = uris(person_uri)
predicates.setdefault(NS.core.informationResourceInAuthorship,
[]).append({
'type': 'uri',
'value': author_uri
})
author_predicates = {
NS.rdf.type: uris(NS.core.Authorship),
NS.core.linkedAuthor: uris(person_uri),
NS.core.linkedInformationResource: uris(work_uri),
NS.core.authorRank: literals(str(rank + 1),
datatype=NS.xsd.int)
}
self.graph[author_uri] = author_predicates
if not person_uri in self.graph:
person_predicates = {NS.rdf.type: uris(NS.foaf.Person)}
if author['family_name']:
person_predicates[NS.foaf.lastName] = literals(
author['family_name'])
if author['initials']:
person_predicates[NS.foaf.firstName] = literals(
author['initials'])
if author['prefix']:
person_predicates[NS.foaf.prefix] = literals(
author['prefix'])
if author['honorific']:
person_predicates[NS.core.preferredTitle] = literals(
author['honorific'])
fullname = [author['family_name']]
if author['initials']:
fullname.append(', %s' % author['initials'])
if author['prefix']:
fullname.append(' %s' % author['prefix'])
person_predicates[NS.rdfs.label] = literals(' '.join(fullname))
position_uri = NS.viveur['position-%s' %
author['researcher_id']]
person_predicates[NS.core.personInPosition] = uris(
position_uri)
position_predicates = {
NS.rdf.type: uris(NS.core.PrimaryPosition),
NS.core.positionForPerson: uris(person_uri),
NS.rdfs.label:
literals(author.get('type') or 'researcher')
}
if author['affiliation']['name'] == 'Extern':
org_uri = None
faculty_uri = None
else:
org_uri = NS.viveur['org-%s' % author['affiliation']['id']]
try:
faculty_uri = NS.viveur['org-%s' %
author['faculty']['id']]
except:
faculty_uri = None
person_predicates[NS.rdf.type].append({
'type':
'uri',
'value':
NS.eur.EURAcademicEmployee
})
position_predicates[NS.core.positionInOrganization] = uris(
org_uri)
self.graph[person_uri] = person_predicates
self.graph[position_uri] = position_predicates
if org_uri and org_uri not in self.graph:
name = (author['affiliation']['name_english']
or author['affiliation']['name'])
org_type_uri = NS.eur['Academic%s' %
author['affiliation']['type']]
org_predicates = {
NS.rdf.type: uris(NS.foaf.Organization, org_type_uri),
NS.rdfs.label: literals(name),
NS.foaf.name: literals(name)
}
if faculty_uri:
org_predicates[NS.core.subOrganizationWithin] = uris(
faculty_uri)
self.graph[org_uri] = org_predicates
if org_uri and faculty_uri and faculty_uri not in self.graph:
name = (author['faculty']['name_english']
or author['faculty']['name'])
org_type_uri = NS.eur['Academic%s' %
author['affiliation']['type']]
org_predicates = {
NS.rdf.type: uris(NS.foaf.Organization, org_type_uri),
NS.rdfs.label: literals(name),
NS.foaf.name: literals(name)
}
self.graph[faculty_uri] = org_predicates
self.graph[work_uri] = predicates
def convert(self, work_id):
work = self.db.publication(work_id)
if (work['status'] == 'Work in progress' or
work['type'] == 'Other output'):
return
if work['type'] == 'Scientific position':
# TODO: position should be added to a person, it's not a work
return
elif work['type'] == 'Journal editorship - referee':
# TODO: seems more like a role, same with book editorship
return
work_uri = NS.viveur['work-%s' % work['id']]
predicates = {}
predicates[NS.rdf.type] = uris(VIVOTYPES[work['type']])
if work['title']:
predicates[NS.rdfs.label] = literals(work['title'],
datatype=NS.xsd.string)
predicates[NS.dcterms.title] = literals(work['title'],
datatype=NS.xsd.string)
if work['publisher_loc']:
predicates[
NS.core.placeOfPublication] = literals(work['publisher_loc'])
if work['publisher']:
predicates[NS.core.publisher] = literals(work['publisher'])
if work['start_page']:
predicates[NS.bibo.pageStart] = literals(work['start_page'],
datatype=NS.xsd.string)
if work['end_page']:
predicates[NS.bibo.pageEnd] = literals(work['end_page'],
datatype=NS.xsd.string)
if work['num_pages']:
predicates[NS.bibo.numPages] = literals(work['num_pages'])
if work['volume']:
predicates[NS.bibo.volume] = literals(work['volume'],
datatype=NS.xsd.string)
if work['issue']:
predicates[NS.bibo.volume] = literals(work['issue'],
datatype=NS.xsd.string)
if work['abstract']:
predicates[NS.bibo.abstract] = literals(work['abstract'],
datatype=NS.xsd.string)
if work['issued_year']:
dt_uri = NS.viveur['datetime-%s' % work['id']]
predicates[NS.core.dateTimeValue] = uris(dt_uri)
self.graph[dt_uri] = {
NS.rdf.type: uris(NS.core.DateTimeValue),
NS.core.dateTimePrecision: uris(NS.core.yearPrecision),
NS.core.dateTime: literals(
'%s-01-01T00:00:00' % work['issued_year'],
datatype=NS.xsd.dateTime)}
urls = [url for url in (work['url'], work['repository_url']) if url]
for url in urls:
if url.startswith('http://dx.doi.org'):
predicates[NS.bibo.doi] = literals(
url.replace('http://dx.doi.org/', 'doi:'),
datatype=NS.xsd.anyURI)
elif url.startswith('http://hdl.handle.net'):
predicates[NS.bibo.handle] = literals(
url.replace('http://hdl.handle.net/', 'hdl:'),
datatype=NS.xsd.anyURI)
if urls:
predicates[NS.core.linkURI] = literals(*urls,
datatype=NS.xsd.anyURI)
for rank, author in enumerate(work['author']):
person_uri = NS.viveur['person-%s' % author['researcher_id']]
author_uri = NS.viveur['author-%s-%s' % (work_id, rank + 1)]
if rank == 0:
predicates[NS.dcterms.created] = uris(person_uri)
predicates.setdefault(NS.core.informationResourceInAuthorship,
[]).append({'type': 'uri',
'value': author_uri})
author_predicates = {
NS.rdf.type: uris(NS.core.Authorship),
NS.core.linkedAuthor: uris(person_uri),
NS.core.linkedInformationResource: uris(work_uri),
NS.core.authorRank: literals(str(rank+1), datatype=NS.xsd.int)}
self.graph[author_uri] = author_predicates
if not person_uri in self.graph:
person_predicates = {
NS.rdf.type: uris(NS.foaf.Person)
}
if author['family_name']:
person_predicates[
NS.foaf.lastName] = literals(author['family_name'])
if author['initials']:
person_predicates[
NS.foaf.firstName] = literals(author['initials'])
if author['prefix']:
person_predicates[
NS.foaf.prefix] = literals(author['prefix'])
if author['honorific']:
person_predicates[
NS.core.preferredTitle] = literals(author['honorific'])
fullname = [author['family_name']]
if author['initials']:
fullname.append(', %s' % author['initials'])
if author['prefix']:
fullname.append(' %s' % author['prefix'])
person_predicates[NS.rdfs.label] = literals(' '.join(fullname))
position_uri = NS.viveur[
'position-%s' % author['researcher_id']]
person_predicates[
NS.core.personInPosition] = uris(position_uri)
position_predicates = {
NS.rdf.type: uris(NS.core.PrimaryPosition),
NS.core.positionForPerson: uris(person_uri),
NS.rdfs.label: literals(author.get('type') or 'researcher')}
if author['affiliation']['name'] == 'Extern':
org_uri = None
faculty_uri = None
else:
org_uri = NS.viveur['org-%s' % author['affiliation']['id']]
try:
faculty_uri = NS.viveur[
'org-%s' % author['faculty']['id']]
except:
faculty_uri = None
person_predicates[NS.rdf.type].append(
{'type': 'uri',
'value': NS.eur.EURAcademicEmployee})
position_predicates[
NS.core.positionInOrganization] = uris(org_uri)
self.graph[person_uri] = person_predicates
self.graph[position_uri] = position_predicates
if org_uri and org_uri not in self.graph:
name = (author['affiliation']['name_english'] or
author['affiliation']['name'])
org_type_uri = NS.eur[
'Academic%s' % author['affiliation']['type']]
org_predicates = {
NS.rdf.type: uris(NS.foaf.Organization,
org_type_uri),
NS.rdfs.label: literals(name),
NS.foaf.name: literals(name)}
if faculty_uri:
org_predicates[NS.core.subOrganizationWithin] = uris(
faculty_uri)
self.graph[org_uri] = org_predicates
if org_uri and faculty_uri and faculty_uri not in self.graph:
name = (author['faculty']['name_english'] or
author['faculty']['name'])
org_type_uri = NS.eur[
'Academic%s' % author['affiliation']['type']]
org_predicates = {
NS.rdf.type: uris(NS.foaf.Organization,
org_type_uri),
NS.rdfs.label: literals(name),
NS.foaf.name: literals(name)}
self.graph[faculty_uri] = org_predicates
self.graph[work_uri] = predicates
'internet article': NS.bibo.Webpage,
'Book editorship': NS.bibo.Book,
'Lecture': NS.core.Presentation,
'Inaugural speech': NS.core.Presentation,
'television or radio appearance': NS.bibo.Interview,
'Computer program / software': NS.dctype.Software,
'Patent': NS.bibo.Patent
}
# XXX: Book editorship is a contributor role, not a type..
ONTOLOGY = {
NS.eur.EURAcademicEmployee: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Person),
NS.rdfs.label: literals("EUR Academic Employee")
},
NS.eur.AcademicDepartment: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Organization),
NS.rdfs.label: literals("EUR Department")
},
NS.eur.AcademicFaculty: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Organization),
NS.rdfs.label: literals("EUR Faculty")
},
}
class VIVOConverter(object):
'Award': NS.core.Award,
'internet article': NS.bibo.Webpage,
'Book editorship': NS.bibo.Book,
'Lecture': NS.core.Presentation,
'Inaugural speech': NS.core.Presentation,
'television or radio appearance': NS.bibo.Interview,
'Computer program / software': NS.dctype.Software,
'Patent': NS.bibo.Patent}
# XXX: Book editorship is a contributor role, not a type..
ONTOLOGY = {
NS.eur.EURAcademicEmployee: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Person),
NS.rdfs.label: literals("EUR Academic Employee")},
NS.eur.AcademicDepartment: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Organization),
NS.rdfs.label: literals("EUR Department")},
NS.eur.AcademicFaculty: {
NS.rdf.type: uris(NS.owl.Class),
NS.rdfs.subClassOf: uris(NS.foaf.Organization),
NS.rdfs.label: literals("EUR Faculty")},
}
class VIVOConverter(object):
def __init__(self, metis_db, publication_ids):
self.db = metis_db
self.graph = {}
