def main():
global args
args = parser.parse_args()
args.batch_size = 10 # only segment one image for experiment
model_dir = os.path.dirname(args.dir)
core_config_path = os.path.join(model_dir, 'configs/core.config')
core_config = CoreConfig()
core_config.read(core_config_path)
print('Using core configuration from {}'.format(core_config_path))
offset_list = core_config.offsets
print("offsets are: {}".format(offset_list))
testset = WaldoDataset(args.test_data, core_config, args.train_image_size)
print('Total samples in the test set: {0}'.format(len(testset)))
dataloader = torch.utils.data.DataLoader(testset,
num_workers=1,
batch_size=args.batch_size)
segment_dir = args.dir
if not os.path.exists(segment_dir):
os.makedirs(segment_dir)
segment(dataloader, segment_dir, core_config)
def main():
global args
args = parser.parse_args()
args.batch_size = 1 # only segment one image for experiment
model_dir = os.path.dirname(args.dir)
core_config_path = os.path.join(model_dir, 'configs/core.config')
unet_config_path = os.path.join(model_dir, 'configs/unet.config')
core_config = CoreConfig()
core_config.read(core_config_path)
print('Using core configuration from {}'.format(core_config_path))
# loading Unet configuration
unet_config = UnetConfig()
unet_config.read(unet_config_path, args.train_image_size)
print('Using unet configuration from {}'.format(unet_config_path))
offset_list = core_config.offsets
print("offsets are: {}".format(offset_list))
# model configurations from core config
num_classes = core_config.num_classes
num_colors = core_config.num_colors
num_offsets = len(core_config.offsets)
# model configurations from unet config
start_filters = unet_config.start_filters
up_mode = unet_config.up_mode
merge_mode = unet_config.merge_mode
depth = unet_config.depth
model = UNet(num_classes, num_offsets,
in_channels=num_colors, depth=depth,
start_filts=start_filters,
up_mode=up_mode,
merge_mode=merge_mode)
model_path = os.path.join(model_dir, args.model)
if os.path.isfile(model_path):
print("=> loading checkpoint '{}'".format(model_path))
checkpoint = torch.load(model_path,
map_location=lambda storage, loc: storage)
model.load_state_dict(checkpoint['state_dict'])
print("loaded.")
else:
print("=> no checkpoint found at '{}'".format(model_path))
testset = WaldoTestset(args.test_data, args.train_image_size,
job=args.job, num_jobs=args.num_jobs)
print('Total samples in the test set: {0}'.format(len(testset)))
dataloader = torch.utils.data.DataLoader(
testset, num_workers=1, batch_size=args.batch_size)
segment_dir = args.dir
if not os.path.exists(segment_dir):
os.makedirs(segment_dir)
segment(dataloader, segment_dir, model, core_config)
make_submission(segment_dir, args.csv)
def main():
global args, best_loss
args = parser.parse_args()
if args.tensorboard:
from tensorboard_logger import configure
print("Using tensorboard")
configure("%s" % (args.dir))
# loading core configuration
c_config = CoreConfig()
if args.core_config == '':
print('No core config file given, using default core configuration')
if not os.path.exists(args.core_config):
sys.exit('Cannot find the config file: {}'.format(args.core_config))
else:
c_config.read(args.core_config)
print('Using core configuration from {}'.format(args.core_config))
# loading Unet configuration
u_config = UnetConfig()
if args.unet_config == '':
print('No unet config file given, using default unet configuration')
if not os.path.exists(args.unet_config):
sys.exit('Cannot find the unet configuration file: {}'.format(
args.unet_config))
else:
# need train_image_size for validation
u_config.read(args.unet_config, args.train_image_size)
print('Using unet configuration from {}'.format(args.unet_config))
offset_list = c_config.offsets
print("offsets are: {}".format(offset_list))
# model configurations from core config
num_classes = c_config.num_classes
num_colors = c_config.num_colors
num_offsets = len(c_config.offsets)
# model configurations from unet config
start_filters = u_config.start_filters
up_mode = u_config.up_mode
merge_mode = u_config.merge_mode
depth = u_config.depth
train_data = args.train_dir + '/train'
val_data = args.train_dir + '/val'
trainset = WaldoDataset(train_data, c_config, args.train_image_size)
trainloader = torch.utils.data.DataLoader(trainset,
num_workers=4,
batch_size=args.batch_size,
shuffle=True)
valset = WaldoDataset(val_data, c_config, args.train_image_size)
valloader = torch.utils.data.DataLoader(valset,
num_workers=4,
batch_size=args.batch_size)
NUM_TRAIN = len(trainset)
NUM_VAL = len(valset)
NUM_ALL = NUM_TRAIN + NUM_VAL
print('Total samples: {0} \n'
'Using {1} samples for training, '
'{2} samples for validation'.format(NUM_ALL, NUM_TRAIN, NUM_VAL))
# create model
model = UNet(num_classes,
num_offsets,
in_channels=num_colors,
depth=depth,
start_filts=start_filters,
up_mode=up_mode,
merge_mode=merge_mode).cuda()
# get the number of model parameters
print('Number of model parameters: {}'.format(
sum([p.data.nelement() for p in model.parameters()])))
# optionally resume from a checkpoint
if args.resume:
if os.path.isfile(args.resume):
print("=> loading checkpoint '{}'".format(args.resume))
checkpoint = torch.load(args.resume)
args.start_epoch = checkpoint['epoch']
best_loss = checkpoint['best_loss']
model.load_state_dict(checkpoint['state_dict'])
print("=> loaded checkpoint '{}' (epoch {})".format(
args.resume, checkpoint['epoch']))
else:
print("=> no checkpoint found at '{}'".format(args.resume))
# define optimizer
# optimizer = t.optim.Adam(model.parameters(), lr=1e-3)
optimizer = torch.optim.SGD(model.parameters(),
args.lr,
momentum=args.momentum,
nesterov=args.nesterov,
weight_decay=args.weight_decay)
# Train
for epoch in range(args.start_epoch, args.epochs):
Train(trainloader, model, optimizer, epoch)
val_loss = Validate(valloader, model, epoch)
is_best = val_loss < best_loss
best_loss = min(val_loss, best_loss)
save_checkpoint(
{
'epoch': epoch + 1,
'state_dict': model.state_dict(),
'best_prec1': best_loss,
}, is_best)
print('Best validation loss: ', best_loss)
# visualize some example outputs
outdir = '{}/imgs'.format(args.dir)
if not os.path.exists(outdir):
os.makedirs(outdir)
sample(model, valloader, outdir, c_config)
if len(img.shape) == 2 and channels == 3:
# expand and reshape it to size:(height, width, channels)
img = np.moveaxis(np.array([img, img, img]), 0, -1)
else:
img = img[:, :, :channels]
test_item['img'] = img
test_saver.write_image(id_, test_item)
test_saver.write_index()
print('Done with {} set!'.format(split_name))
if __name__ == '__main__':
global args
args = parser.parse_args()
cfg = CoreConfig()
cfg.read(args.cfg)
split_names = ['train', 'stage1_test', 'stage2_test_final']
for split in split_names:
ids_file = "{0}/{1}/image_ids.txt".format(args.outdir, split)
if not (os.path.exists(ids_file)):
random.seed(args.seed)
DataProcess(args.indir,
args.outdir,
split,
cfg,
train_prop=args.train_prop)
else:
print(
'Not processing {} data as it is already there.'.format(split))
def main():
global args
args = parser.parse_args()
args.batch_size = 1 # only segment one image for experiment
core_config_path = os.path.join(args.dir, 'configs/core.config')
unet_config_path = os.path.join(args.dir, 'configs/unet.config')
core_config = CoreConfig()
core_config.read(core_config_path)
print('Using core configuration from {}'.format(core_config_path))
# loading Unet configuration
unet_config = UnetConfig()
unet_config.read(unet_config_path, args.train_image_size)
print('Using unet configuration from {}'.format(unet_config_path))
offset_list = core_config.offsets
print("offsets are: {}".format(offset_list))
# model configurations from core config
num_classes = core_config.num_classes
num_colors = core_config.num_colors
num_offsets = len(core_config.offsets)
# model configurations from unet config
start_filters = unet_config.start_filters
up_mode = unet_config.up_mode
merge_mode = unet_config.merge_mode
depth = unet_config.depth
model = UNet(num_classes,
num_offsets,
in_channels=num_colors,
depth=depth,
start_filts=start_filters,
up_mode=up_mode,
merge_mode=merge_mode)
model_path = os.path.join(args.dir, args.model)
if os.path.isfile(model_path):
print("=> loading checkpoint '{}'".format(model_path))
checkpoint = torch.load(model_path,
map_location=lambda storage, loc: storage)
model.load_state_dict(checkpoint['state_dict'])
print("loaded.")
else:
print("=> no checkpoint found at '{}'".format(model_path))
model.eval() # convert the model into evaluation mode
testset = WaldoDataset(args.test_data, core_config, args.train_image_size)
print('Total samples in the test set: {0}'.format(len(testset)))
dataloader = torch.utils.data.DataLoader(testset,
num_workers=1,
batch_size=args.batch_size)
segment_dir = '{}/segment'.format(args.dir)
if not os.path.exists(segment_dir):
os.makedirs(segment_dir)
img, class_pred, adj_pred = sample(model, dataloader, segment_dir,
core_config)
seg = ObjectSegmenter(class_pred[0].detach().numpy(),
adj_pred[0].detach().numpy(), num_classes,
offset_list)
mask_pred, object_class = seg.run_segmentation()
x = {}
# from (color, height, width) to (height, width, color)
x['img'] = np.moveaxis(img[0].numpy(), 0, -1)
x['mask'] = mask_pred.astype(int)
x['object_class'] = object_class
visualize_mask(x, core_config)