def test_output_dims_mm1422(setup_test_data, setup_mm1422_singlepage_tiffs):
"""
test that output dimensions are always (t, c, z, y, x)
"""
# choose a random folder
fold = setup_test_data
_, _, rand_folder = setup_mm1422_singlepage_tiffs
mmr = MicromanagerSequenceReader(rand_folder, extract_data=False)
assert (mmr.get_zarr(0).shape[0] == mmr.frames)
assert (mmr.get_zarr(0).shape[1] == mmr.channels)
assert (mmr.get_zarr(0).shape[2] == mmr.slices)
assert (mmr.get_zarr(0).shape[3] == mmr.height)
assert (mmr.get_zarr(0).shape[4] == mmr.width)
def test_output_dims_mm2gamma_incomplete(
setup_test_data, setup_mm2gamma_singlepage_tiffs_incomplete):
"""
test that output dimensions are correct for interrupted data
"""
# choose a random folder
fold = setup_test_data
folder = setup_mm2gamma_singlepage_tiffs_incomplete
mmr = MicromanagerSequenceReader(folder, extract_data=True)
assert (mmr.get_zarr(0).shape[0] == mmr.frames)
assert (mmr.get_zarr(0).shape[1] == mmr.channels)
assert (mmr.get_zarr(0).shape[2] == mmr.slices)
assert (mmr.get_zarr(0).shape[3] == mmr.height)
assert (mmr.get_zarr(0).shape[4] == mmr.width)
assert (mmr.get_zarr(0).shape[0] == 11)
def test_get_zarr_mm2gamma(setup_test_data, setup_mm2gamma_singlepage_tiffs):
fold = setup_test_data
_, _, rand_folder = setup_mm2gamma_singlepage_tiffs
mmr = MicromanagerSequenceReader(rand_folder, extract_data=True)
for i in range(mmr.get_num_positions()):
z = mmr.get_zarr(i)
assert (z.shape == mmr.shape)
assert (isinstance(z, zarr.core.Array))