def test_configuration_via_JSON():
"""
A JSON document can also be used.
"""
gen = InputFileGenerator()
gen.config.test = "1"
assert gen.config == {"test": "1"}
gen.add_configuration(json.dumps({
"something_else": 2,
"and_more": 3.0}))
assert gen.config == {
"test": "1",
"something_else": 2,
"and_more": 3.0}
# Adding the something that already exists overwrites.
gen.add_configuration(json.dumps({
"test": "4"}))
assert gen.config == {
"test": "4",
"something_else": 2,
"and_more": 3.0}
def test_configuration_via_a_dictionary():
"""
Tests that a dictionary can be used to update the configuration.
"""
gen = InputFileGenerator()
gen.config.test = "1"
assert gen.config == {"test": "1"}
gen.add_configuration({
"something_else": 2,
"and_more": 3.0})
assert gen.config == {
"test": "1",
"something_else": 2,
"and_more": 3.0}
# Adding the something that already exists overwrites.
gen.add_configuration({
"test": "4"})
assert gen.config == {
"test": "4",
"something_else": 2,
"and_more": 3.0}
def test_configuration_via_a_dictionary():
"""
Tests that a dictionary can be used to update the configuration.
"""
gen = InputFileGenerator()
gen.config.test = "1"
assert gen.config == {"test": "1"}
gen.add_configuration({
"something_else": 2,
"and_more": 3.0})
assert gen.config == {
"test": "1",
"something_else": 2,
"and_more": 3.0}
# Adding the something that already exists overwrites.
gen.add_configuration({
"test": "4"})
assert gen.config == {
"test": "4",
"something_else": 2,
"and_more": 3.0}
def test_configuration_via_JSON():
"""
A JSON document can also be used.
"""
gen = InputFileGenerator()
gen.config.test = "1"
assert gen.config == {"test": "1"}
gen.add_configuration(json.dumps({
"something_else": 2,
"and_more": 3.0}))
assert gen.config == {
"test": "1",
"something_else": 2,
"and_more": 3.0}
# Adding the something that already exists overwrites.
gen.add_configuration(json.dumps({
"test": "4"}))
assert gen.config == {
"test": "4",
"something_else": 2,
"and_more": 3.0}
def test_config_raises_error_if_wrong_type():
"""
The configuration method should raise in case a wrong type is added.
"""
gen = InputFileGenerator()
with pytest.raises(ValueError):
gen.add_configuration("something")
# Same with JSON if it is not a JSON object but a list.
with pytest.raises(ValueError):
gen.add_configuration(json.dumps([{"something": "new"}]))
def test_config_raises_error_if_wrong_type():
"""
The configuration method should raise in case a wrong type is added.
"""
gen = InputFileGenerator()
with pytest.raises(ValueError):
gen.add_configuration("something")
# Same with JSON if it is not a JSON object but a list.
with pytest.raises(ValueError):
gen.add_configuration(json.dumps([{"something": "new"}]))
def compute(self):
gen = InputFileGenerator()
userconf = json.load(open(self.parameters["solver_conf_file"]))
fields = userconf["fields"]
for x in fields:
gen.add_configuration({x["name"]:self.strToBool(x["value"])})
with open (self.parameters["quakeml"], "r") as events:
quakeml=events.read()
#unicode_qml=quakeml.decode('utf-8')
#data = unicode_qml.encode('ascii','ignore')
##
cat=readQuakeML(quakeml)
events = []
#cat = obspy.readEvents(data)
#Remove all events with no moment tensor.
for event in cat:
for fm in event.focal_mechanisms:
if fm.moment_tensor and fm.moment_tensor.tensor:
events.append(event)
break
cat.events = events
gen.add_events(cat)
evn=0
outputdir=""
for x in userconf["events"]:
gen.event_filter=[x]
if self.parameters["station_format"]=="stationXML":
gen.add_stations(self.parameters["stations_file"])
if self.parameters["station_format"]=="points":
stlist = []
with open(self.parameters["stations_file"]) as f:
k=False
for line in f:
if (k==False):
k=True
else:
station={}
l=line.strip().split(" ")
station.update({"id":l[1]+"."+l[0]})
station.update({"latitude":float(l[3])})
station.update({"longitude":float(l[2])})
station.update({"elevation_in_m":float(l[4])})
station.update({"local_depth_in_m":float(l[5])})
stlist.append(station)
gen.add_stations(stlist)
gen.station_filter = userconf["stations"]
outputdir=self.outputdest+userconf["runId"]+"/"+userconf["runId"]+"_"+str(evn)+"/DATA"
output_files = gen.write(format=userconf["solver"], output_dir=outputdir)
locations = []
for x in output_files.keys():
locations.append("file://"+socket.gethostname()+outputdir+"/"+x)
self.addOutput(gen._filtered_events,location=locations,metadata=self.extractEventMetadata(outputdir,gen._filtered_events),control={"con:immediateAccess":"true"})
evn+=1
self.addOutput(outputdir,location=locations,metadata={"to_xdecompose":str(outputdir)},control={"con:immediateAccess":"true"})
def compute(self):
gen = InputFileGenerator()
userconf = json.load(open(self.parameters["solver_conf_file"]))
fields = userconf["fields"]
for x in fields:
gen.add_configuration({x["name"]: self.strToBool(x["value"])})
with open(self.parameters["quakeml"], "r") as events:
quakeml = events.read()
#unicode_qml=quakeml.decode('utf-8')
#data = unicode_qml.encode('ascii','ignore')
##
cat = readQuakeML(quakeml)
events = []
#cat = obspy.readEvents(data)
#Remove all events with no moment tensor.
for event in cat:
for fm in event.focal_mechanisms:
if fm.moment_tensor and fm.moment_tensor.tensor:
events.append(event)
break
cat.events = events
gen.add_events(cat)
evn = 0
outputdir = ""
for x in userconf["events"]:
gen.event_filter = [x]
if self.parameters["station_format"] == "stationXML":
gen.add_stations(self.parameters["stations_file"])
if self.parameters["station_format"] == "points":
stlist = []
with open(self.parameters["stations_file"]) as f:
k = False
for line in f:
if (k == False):
k = True
else:
station = {}
l = line.strip().split(" ")
station.update({"id": l[1] + "." + l[0]})
station.update({"latitude": float(l[3])})
station.update({"longitude": float(l[2])})
station.update({"elevation_in_m": float(l[4])})
station.update({"local_depth_in_m": float(l[5])})
stlist.append(station)
gen.add_stations(stlist)
gen.station_filter = userconf["stations"]
outputdir = self.outputdest + userconf["runId"] + "/" + userconf[
"runId"] + "_" + str(evn) + "/DATA"
output_files = gen.write(format=userconf["solver"],
output_dir=outputdir)
locations = []
for x in output_files.keys():
locations.append("file://" + socket.gethostname() + outputdir +
"/" + x)
self.addOutput(gen._filtered_events,
location=locations,
metadata=self.extractEventMetadata(
outputdir, gen._filtered_events),
control={"con:immediateAccess": "true"})
evn += 1
self.addOutput(outputdir,
location=locations,
metadata={"to_xdecompose": str(outputdir)},
control={"con:immediateAccess": "true"})