def __init__(self, conf_file='configurations.json'):
self.annotators = OrderedDict()
self.datasets = OrderedDict()
self.experiments = OrderedDict()
with open(conf_file, 'r') as inputfile:
conf = json.load(inputfile)
# Load annotators
for annotator_conf in conf["annotators"]:
nickname = annotator_conf["alias"]
module_name = annotator_conf["name"]
annotator = create_annotator(str(module_name))
annotator.set_configuration(annotator_conf["configuration"])
self.annotators[nickname] = annotator
# Load datasets
for dataset_conf in conf["datasets"]:
self.datasets[dataset_conf["name"]] = \
Dataset.load_tsv(dataset_conf["file"])
# Load experiments
for exp_conf in conf["experiments"]:
self.experiments[exp_conf["name"]] = \
create_experiment(str(exp_conf["name"]), exp_conf)
micro_msg = "[micro P: %.3f R: %.3f F1: %.3f]" % (
self.metrics.precision(), self.metrics.recall(), self.metrics.f1()
)
if self.metrics.has_macro():
macro_msg = " [macro P: %.3f R: %.3f F1: %.3f]" % (
self.metrics.macro_precision(),
self.metrics.macro_recall(),
self.metrics.macro_f1()
)
else:
macro_msg = ""
self.log.info("%s %s%s" % (count_msg, micro_msg, macro_msg))
if __name__ == "__main__":
import sys
from wikibench.dataset import Dataset
from wikibench.utils import create_annotator, create_benchmark
benchmark_name, annotator_name, dataset = sys.argv[1:4]
dataset = Dataset.load(dataset)
annotator = create_annotator(annotator_name)
benchmark = create_benchmark(benchmark_name)
benchmark.parse_arguments(sys.argv[4:])
benchmark.run(dataset, annotator)
benchmark.summary()
