def create_menu(self, parent):
self.menubar = tk.Menu(self.main_frame)
# File menu
self.file_menu = tk.Menu(self.menubar)
menu = self.file_menu
menu.add_command(label='Open', command=self.open)
menu.add_command(label='Exit', command=self.exit)
self.menubar.add_cascade(label="File", menu=self.file_menu)
# Edit menu
self.edit_menu = tk.Menu(self.menubar)
menu = self.edit_menu
menu.add_command(label='Complement', command=self.complement)
menu.add_command(label='Antiparallel', command=self.antiparallel)
menu.add_command(label='Reverse', command=self.reverse)
menu.add_command(label='Fix sequence', command=self.fix_sequence)
menu.add_command(label='Search', command=self.search)
self.menubar.add_cascade(label="Edit", menu=self.edit_menu)
# Translation menu
self.translation_menu = tk.Menu(self.menubar)
self.gencode_menu = tk.Menu(self.translation_menu)
self.frame_menu = tk.Menu(self.translation_menu)
menu = self.translation_menu
menu.add_cascade(label="Genetic Codes", menu=self.gencode_menu)
menu.add_cascade(label='Frame', menu=self.frame_menu)
menu.add_separator()
menu.add_command(label='Single frame translation',
command=self.translate)
menu.add_command(label='Three frame translation (+)',
command=lambda: self.gcframe(direction='plus'))
menu.add_command(label='Three frame translation (-)',
command=lambda: self.gcframe(direction='minus'))
menu.add_command(label='Six frame translation', command=self.gcframe)
menu.add_command(label='Extract to FASTA', command=self.extract)
# Frames submenu
self.frame_int = tk.IntVar()
menu = self.frame_menu
menu.add_radiobutton(label='+1', variable=self.frame_int, value=1)
menu.add_radiobutton(label='+2', variable=self.frame_int, value=2)
menu.add_radiobutton(label='+3', variable=self.frame_int, value=3)
menu.add_radiobutton(label='-1', variable=self.frame_int, value=-1)
menu.add_radiobutton(label='-2', variable=self.frame_int, value=-2)
menu.add_radiobutton(label='-3', variable=self.frame_int, value=-3)
self.frame_int.set(1)
# Codon tables submenu
self.current_codon_table = tk.StringVar()
self.current_codon_table.set('Standard')
self.current_codon_table_id = 1
keys = list(self.translation_tables.keys())
keys.remove('Standard')
keys.sort()
keys = ['Standard'] + keys
menu = self.gencode_menu
for table in keys:
menu.add_radiobutton(label=table,
command=self.set_codon_table,
variable=self.current_codon_table)
self.menubar.add_cascade(label="Translations",
menu=self.translation_menu)
# Tools menu
self.tools_menu = tk.Menu(self.menubar)
menu = self.tools_menu
menu.add_command(label='Blast', command=self.blast)
menu.add_command(label='Stats', command=self.statistics)
self.menubar.add_cascade(label="Tools", menu=self.tools_menu)
# Help menu
self.help_menu = tk.Menu(self.menubar)
menu = self.help_menu
menu.add_command(label='Help', command=lambda: xbbtools_help())
self.menubar.add_cascade(label="Help", menu=self.help_menu)
self.parent.config(menu=self.menubar)
def create_menu(self, parent):
self.menubar = tk.Menu(self.main_frame)
# File menu
self.file_menu = tk.Menu(self.menubar)
menu = self.file_menu
menu.add_command(label='Open', command=self.open)
menu.add_command(label='Exit', command=self.exit)
self.menubar.add_cascade(label="File", menu=self.file_menu)
# Edit menu
self.edit_menu = tk.Menu(self.menubar)
menu = self.edit_menu
menu.add_command(label='Complement', command=self.complement)
menu.add_command(label='Antiparallel', command=self.antiparallel)
menu.add_command(label='Reverse', command=self.reverse)
menu.add_command(label='Fix sequence', command=self.fix_sequence)
menu.add_command(label='Search', command=self.search)
self.menubar.add_cascade(label="Edit", menu=self.edit_menu)
# Translation menu
self.translation_menu = tk.Menu(self.menubar)
self.gencode_menu = tk.Menu(self.translation_menu)
self.frame_menu = tk.Menu(self.translation_menu)
menu = self.translation_menu
menu.add_cascade(label="Genetic Codes", menu=self.gencode_menu)
menu.add_cascade(label='Frame', menu=self.frame_menu)
menu.add_separator()
menu.add_command(label='Single frame translation',
command=self.translate)
menu.add_command(label='Three frame translation (+)',
command=lambda: self.gcframe(direction='plus'))
menu.add_command(label='Three frame translation (-)',
command=lambda: self.gcframe(direction='minus'))
menu.add_command(label='Six frame translation', command=self.gcframe)
menu.add_command(label='Extract to FASTA', command=self.extract)
# Frames submenu
self.frame_int = tk.IntVar()
menu = self.frame_menu
menu.add_radiobutton(label='+1', variable=self.frame_int, value=1)
menu.add_radiobutton(label='+2', variable=self.frame_int, value=2)
menu.add_radiobutton(label='+3', variable=self.frame_int, value=3)
menu.add_radiobutton(label='-1', variable=self.frame_int, value=-1)
menu.add_radiobutton(label='-2', variable=self.frame_int, value=-2)
menu.add_radiobutton(label='-3', variable=self.frame_int, value=-3)
self.frame_int.set(1)
# Codon tables submenu
self.current_codon_table = tk.StringVar()
self.current_codon_table.set('Standard')
self.current_codon_table_id = 1
keys = list(self.translation_tables.keys())
keys.remove('Standard')
keys.sort()
keys = ['Standard'] + keys
menu = self.gencode_menu
for table in keys:
menu.add_radiobutton(label=table,
command=self.set_codon_table,
variable=self.current_codon_table)
self.menubar.add_cascade(label="Translations",
menu=self.translation_menu)
# Tools menu
self.tools_menu = tk.Menu(self.menubar)
menu = self.tools_menu
menu.add_command(label='Blast', command=self.blast)
menu.add_command(label='Stats', command=self.statistics)
self.menubar.add_cascade(label="Tools", menu=self.tools_menu)
# Help menu
self.help_menu = tk.Menu(self.menubar)
menu = self.help_menu
menu.add_command(label='Help', command=lambda: xbbtools_help())
self.menubar.add_cascade(label="Help", menu=self.help_menu)
self.parent.config(menu=self.menubar)
def create_menu(self, parent):
"""Create the main menu bar."""
self.menubar = tk.Menu(self.main_frame)
# File menu
self.file_menu = tk.Menu(self.menubar)
menu = self.file_menu
menu.add_command(label="Open", command=self.open)
menu.add_command(label="Exit", command=self.exit)
self.menubar.add_cascade(label="File", menu=self.file_menu)
# Edit menu
self.edit_menu = tk.Menu(self.menubar)
menu = self.edit_menu
menu.add_command(label="Complement", command=self.complement)
menu.add_command(label="Antiparallel", command=self.antiparallel)
menu.add_command(label="Reverse", command=self.reverse)
menu.add_command(label="Fix sequence", command=self.fix_sequence)
menu.add_command(label="Search", command=self.search)
self.menubar.add_cascade(label="Edit", menu=self.edit_menu)
# Translation menu
self.translation_menu = tk.Menu(self.menubar)
self.gencode_menu = tk.Menu(self.translation_menu)
self.frame_menu = tk.Menu(self.translation_menu)
menu = self.translation_menu
menu.add_cascade(label="Genetic Codes", menu=self.gencode_menu)
menu.add_cascade(label="Frame", menu=self.frame_menu)
menu.add_separator()
menu.add_command(label="Single frame translation", command=self.translate)
menu.add_command(
label="Three frame translation (+)",
command=lambda: self.gcframe(direction="plus"),
)
menu.add_command(
label="Three frame translation (-)",
command=lambda: self.gcframe(direction="minus"),
)
menu.add_command(label="Six frame translation", command=self.gcframe)
menu.add_command(label="Extract to FASTA", command=self.extract)
# Frames submenu
self.frame_int = tk.IntVar()
menu = self.frame_menu
menu.add_radiobutton(label="+1", variable=self.frame_int, value=1)
menu.add_radiobutton(label="+2", variable=self.frame_int, value=2)
menu.add_radiobutton(label="+3", variable=self.frame_int, value=3)
menu.add_radiobutton(label="-1", variable=self.frame_int, value=-1)
menu.add_radiobutton(label="-2", variable=self.frame_int, value=-2)
menu.add_radiobutton(label="-3", variable=self.frame_int, value=-3)
self.frame_int.set(1)
# Codon tables submenu
self.current_codon_table = tk.StringVar()
self.current_codon_table.set("Standard")
self.current_codon_table_id = 1
keys = list(self.translation_tables.keys())
keys.remove("Standard")
keys.sort()
keys = ["Standard"] + keys
menu = self.gencode_menu
for table in keys:
menu.add_radiobutton(
label=table,
command=self.set_codon_table,
variable=self.current_codon_table,
)
self.menubar.add_cascade(label="Translations", menu=self.translation_menu)
# Tools menu
self.tools_menu = tk.Menu(self.menubar)
menu = self.tools_menu
menu.add_command(label="Blast", command=self.blast)
menu.add_command(label="Stats", command=self.statistics)
self.menubar.add_cascade(label="Tools", menu=self.tools_menu)
# Help menu
self.help_menu = tk.Menu(self.menubar)
menu = self.help_menu
menu.add_command(label="Help", command=lambda: xbbtools_help())
self.menubar.add_cascade(label="Help", menu=self.help_menu)
self.parent.config(menu=self.menubar)