def deprecated_retrieve_saved_variants_json(project, variant_tuples,
create_if_missing):
project_id = project.deprecated_project_id
xbrowse_project = BaseProject.objects.get(project_id=project_id)
user = User.objects.filter(is_staff=True).first(
) # HGMD annotations are only returned for staff users
variants = get_variants_from_variant_tuples(xbrowse_project,
variant_tuples,
user=user)
if not create_if_missing:
variants = [
var for var in variants if not var.get_extra('created_variant')
]
add_extra_info_to_variants_project(get_reference(),
xbrowse_project,
variants,
add_populations=True)
family_guids_by_id = {
f.family_id: f.guid
for f in Family.objects.filter(project=project)
}
individual_guids_by_id = {
i.individual_id: i.guid
for i in Individual.objects.filter(family__project=project)
}
return [
_variant_details(variant.toJSON(), family_guids_by_id,
individual_guids_by_id) for variant in variants
]
def _deprecated_retrieve_saved_variants_json(project, variant_tuples, create_if_missing):
project_id = project.deprecated_project_id
xbrowse_project = BaseProject.objects.get(project_id=project_id)
user = User.objects.filter(is_staff=True).first() # HGMD annotations are only returned for staff users
variants = get_variants_from_variant_tuples(xbrowse_project, variant_tuples, user=user)
if not create_if_missing:
variants = [var for var in variants if not var.get_extra('created_variant')]
add_extra_info_to_variants_project(get_reference(), xbrowse_project, variants, add_populations=True)
return [variant.toJSON() for variant in variants]
def _deprecated_retrieve_saved_variants_json(project, variant_tuples, create_if_missing):
project_id = project.deprecated_project_id
xbrowse_project = BaseProject.objects.get(project_id=project_id)
user = User.objects.filter(is_staff=True).first() # HGMD annotations are only returned for staff users
variants = get_variants_from_variant_tuples(xbrowse_project, variant_tuples, user=user)
if not create_if_missing:
variants = [var for var in variants if not var.get_extra('created_variant')]
add_extra_info_to_variants_project(get_reference(), xbrowse_project, variants, add_populations=True)
return [variant.toJSON() for variant in variants]