def process_xml(filename):
data = xmlr.xmlparse(filename)
return data
return size
filepath = '/home/hbldh/Downloads/google-renewals-all-20080624.xml'
#print('Size in MB: {0:.2f} MB'.format(document_size(doc)/1024./1024.))
"""
"""
# xmlparse
print ('xmlr.xmlparse using xml.etree.ElementTree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml", XMLParsingMethods.ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc)/1024./1024.))
del doc
print ('xmlr.xmlparse using xml.etree.cElementTree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml", XMLParsingMethods.C_ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc)/1024./1024.))
del doc
print ('xmlr.xmlparse using lxml.etree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml", XMLParsingMethods.LXML_ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc)/1024./1024.))
del doc
# xmliter
##Apnea
from xmlr import xmlparse
import pandas as pd
doc = xmlparse("./apnea/mesa-sleep-0001-profusion.xml"
) #it gives us the file in the form of Dictonaries
final = doc["CMPStudyConfig"]["ScoredEvents"]["ScoredEvent"]
df = pd.DataFrame.from_dict(final)
data = df[df["Name"] == 'Hypopnea']
Apnea = data[["Duration", "Input", "Name", "Start"]]
Apnea.to_csv("Apnea.csv")
##Flow
import pyedflib
import numpy as np
f = pyedflib.EdfReader("./flow/mesa-sleep-0001.edf")
signal_labels = f.getSignalLabels()
#to get the description about labels:
for channel in range(len(signal_labels)):
print("\nsignal parameters for the %d.channel:\n\n" % channel)
print("label: %s" % f.getLabel(channel))
print("samples in file: %i" % f.getNSamples()[channel])
channel = 8 ## this is our required column
def test_parsing_test_doc(parser):
f = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'test_doc.xml')
doc = xmlparse(f, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
raise ValueError("Unsizable object: {0}".format(type(doc)))
return size
filepath = '/home/hbldh/Downloads/google-renewals-all-20080624.xml'
#print('Size in MB: {0:.2f} MB'.format(document_size(doc)/1024./1024.))
"""
"""
# xmlparse
print('xmlr.xmlparse using xml.etree.ElementTree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml",
XMLParsingMethods.ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc) / 1024. / 1024.))
del doc
print('xmlr.xmlparse using xml.etree.cElementTree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml",
XMLParsingMethods.C_ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc) / 1024. / 1024.))
del doc
print('xmlr.xmlparse using lxml.etree')
doc = xmlparse("/home/hbldh/Downloads/google-renewals-all-20080624.xml",
XMLParsingMethods.LXML_ELEMENTTREE)
print('Size in MB: {0:.2f} MB'.format(document_size(doc) / 1024. / 1024.))
del doc
def test_parsing_menu(xmldata_menu, parser):
doc = xmlparse(xmldata_menu, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
def test_parsing_google_renewal_data(parser):
f = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'google-renewals-subset-20080624.xml')
doc = xmlparse(f, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
def test_parsing_note_error(xmldata_note_error, parser):
with pytest.raises((ParseError, cParseError, XMLSyntaxError)):
xmlparse(xmldata_note_error, parsing_method=parser)
def test_parsing_test_doc(parser):
f = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'test_doc.xml')
doc = xmlparse(f, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
def test_parsing_google_renewal_data(parser):
f = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'google-renewals-subset-20080624.xml')
doc = xmlparse(f, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
def test_parsing_menu(xmldata_menu, parser):
doc = xmlparse(xmldata_menu, parsing_method=parser)
assert isinstance(doc, dict)
walk_test(doc)
def test_parsing_note_error(xmldata_note_error, parser):
with pytest.raises((ParseError, cParseError, XMLSyntaxError)):
xmlparse(xmldata_note_error, parsing_method=parser)