def prepareSimulation(self):
import CompuCellSetup
# CompuCellSetup.setSimulationXMLFileName(self.xmlFileName)
(self.sim, self.simthread) = CompuCellSetup.getCoreSimulationObjects()
import CompuCell
CompuCellSetup.initializeSimulationObjects(self.sim, self.simthread)
CompuCellSetup.extraInitSimulationObjects(self.sim, self.simthread)
self.simulationInitialized = True
self.callingWidget.sim = self.sim
def prepareSimulation(self):
import CompuCellSetup
# CompuCellSetup.setSimulationXMLFileName(self.xmlFileName)
(self.sim, self.simthread) = CompuCellSetup.getCoreSimulationObjects()
import CompuCell
CompuCellSetup.initializeSimulationObjects(self.sim, self.simthread)
CompuCellSetup.extraInitSimulationObjects(self.sim, self.simthread)
self.simulationInitialized=True
self.callingWidget.sim=self.sim
import sys
from os import environ
from os import getcwd
import string
from PySteppablesExamples import SimulationFileStorage
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim, simthread = CompuCellSetup.getCoreSimulationObjects()
# Create extra player fields here or add attributes
CompuCellSetup.initializeSimulationObjects(sim, simthread)
# Add Python steppables here
steppableRegistry = CompuCellSetup.getSteppableRegistry()
from helpfile_steppables_CellDraw import HelpfileCellDrawSteppable
theHelpfileCellDrawSteppable = HelpfileCellDrawSteppable(_simulator=sim,
_frequency=100)
steppableRegistry.registerSteppable(theHelpfileCellDrawSteppable)
# sfs=SimulationFileStorage(_simulator=sim,_frequency=10)
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D.xml")
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D_info_printer.py")
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D_steppables_info_printer.py")
# steppableRegistry.registerSteppable(sfs)
import sys
from os import environ
import string
python_module_path=os.environ["PYTHON_MODULE_PATH"]
appended=sys.path.count(python_module_path)
if not appended:
sys.path.append(python_module_path)
# sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
if not CompuCellSetup.simulationFileName=="":
CompuCellSetup.setSimulationXMLFileName(CompuCellSetup.simulationFileName)
sim,simthread = CompuCellSetup.getCoreSimulationObjects()
import CompuCell #notice importing CompuCell to main script has to be done after call to getCoreSimulationObjects()
#Create extra player fields here or add attributes or plugin:
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
import XMLUtils
steppableList=CompuCellSetup.cc3dXML2ObjConverter.root.getElements("Plugin")
steppableListPy=XMLUtils.CC3DXMLListPy(steppableList)
for element in steppableListPy:
print "Element",element.name
# ," name", element.getNumberOfChildren()
import sys
from os import environ
from os import getcwd
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim, simthread = CompuCellSetup.getCoreSimulationObjects()
# add extra attributes here
pyAttributeDictionaryAdder, dictAdder = CompuCellSetup.attachDictionaryToCells(
sim)
CompuCellSetup.initializeSimulationObjects(sim, simthread)
# Definitions of additional Python-managed fields go here
#Add Python steppables here
steppableRegistry = CompuCellSetup.getSteppableRegistry()
from bistabSwitch2Steppables import EMT_switch1Steppable
steppableInstance = EMT_switch1Steppable(sim, _frequency=100)
steppableRegistry.registerSteppable(steppableInstance)
CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)
try:
from xml.parsers.expat import ExpatError
import sys
from os import environ
import string
import traceback
python_module_path=os.environ["PYTHON_MODULE_PATH"]
appended=sys.path.count(python_module_path)
if not appended:
sys.path.append(python_module_path)
# sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim,simthread = CompuCellSetup.getCoreSimulationObjects(True) # this only parses xml to extract initial info. No CC3D object is created at this point
if CompuCellSetup.simulationPaths.simulationPythonScriptName != "":
# fileObj=file(CompuCellSetup.simulationPaths.simulationPythonScriptName,"r")
# exec fileObj
# fileObj.close()
print "INSIDE IF CompuCellPythonSimulationNewPlayer \n\n\n"
execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
print "COMPLETED execfile in CompuCellPythonSimulationNewPlayer \n\n\n"
else:
print "INSIDE ELSE CompuCellPythonSimulationNewPlayer \n\n\n"
sim,simthread = CompuCellSetup.getCoreSimulationObjects() # here , once initial info has been extracted we starrt creating CC3D objects - e.g. Simulator is created in this Fcn call
import sys
from os import environ
from os import getcwd
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim,simthread = CompuCellSetup.getCoreSimulationObjects()
# add extra attributes here
pyAttributeDictionaryAdder,dictAdder=CompuCellSetup.attachDictionaryToCells(sim)
CompuCellSetup.initializeSimulationObjects(sim,simthread)
# Definitions of additional Python-managed fields go here
#Add Python steppables here
steppableRegistry=CompuCellSetup.getSteppableRegistry()
from bistabSwitch2Steppables import EMT_switch1Steppable
steppableInstance=EMT_switch1Steppable(sim,_frequency=100)
steppableRegistry.registerSteppable(steppableInstance)
CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
from xml.parsers.expat import ExpatError
import sys
from os import environ
import string
import traceback
python_module_path = os.environ["PYTHON_MODULE_PATH"]
appended = sys.path.count(python_module_path)
if not appended:
sys.path.append(python_module_path)
# sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim, simthread = CompuCellSetup.getCoreSimulationObjects(
True
) # this only parses xml to extract initial info. No CC3D object is created at this point
if CompuCellSetup.simulationPaths.simulationPythonScriptName != "":
# fileObj=file(CompuCellSetup.simulationPaths.simulationPythonScriptName,"r")
# exec fileObj
# fileObj.close()
print "INSIDE IF CompuCellPythonSimulationNewPlayer \n\n\n"
execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
print "COMPLETED execfile in CompuCellPythonSimulationNewPlayer \n\n\n"
else:
print "INSIDE ELSE CompuCellPythonSimulationNewPlayer \n\n\n"
sim, simthread = (
CompuCellSetup.getCoreSimulationObjects()
) # here , once initial info has been extracted we starrt creating CC3D objects - e.g. Simulator is created in this Fcn call