def __init__(self, arg_list):
super(MainFrame, self).__init__()
self.args = args
# Set up tolerance
self.eps = np.finfo("float64").eps
self.firstUpdate = True
self.operationModeChoices = ['none', 'masking']
self.operationMode = self.operationModeChoices[
0] # Masking mode, Peak finding mode
# Init experiment parameters from args
if args.expRun is not None and ':run=' in args.expRun:
self.experimentName = args.expRun.split('exp=')[-1].split(':')[0]
self.runNumber = int(args.expRun.split('run=')[-1])
else:
self.experimentName = args.exp
self.runNumber = int(args.run)
self.detInfo = args.det
self.detAlias = None
self.eventNumber = int(args.evt)
# Directories
self.psocakeDir = None
self.psocakeRunDir = None
self.elogDir = None
self.rootDir = None
self.writeAccess = True
# Init variables
self.det = None
self.detnames = None
self.detInfoList = None
self.isCspad = False
self.evt = None
self.eventID = ""
self.hasExperimentName = False
self.hasRunNumber = False
self.hasDetInfo = False
self.pixelIndAssem = None
# Init diffraction geometry parameters
self.coffset = 0.0
self.clen = 0.0
self.clenEpics = 0.0
self.epics = None
self.detectorDistance = 0.0
self.photonEnergy = None
self.wavelength = None
self.pixelSize = None
self.resolutionRingsOn = False
self.resolution = None
self.resolutionUnits = 0
# Init variables
self.calib = None # ndarray detector image
self.data = None # assembled detector image
self.cx = 0 # detector centre x
self.cy = 0 # detector centre y
## Switch to using white background and black foreground
pg.setConfigOption('background', color.background)
pg.setConfigOption('foreground', color.foreground)
########################################
# Instantiate panels
########################################
self.exp = ExperimentPanel.ExperimentInfo(self)
self.geom = diffractionGeometryPanel.DiffractionGeometry(self)
self.index = crystalIndexingPanel.CrystalIndexing(self)
self.small = SmallDataPanel.SmallData(self)
#self.evtLabels = LabelPanel.Labels(self)
self.pk = PeakFindingPanel.PeakFinding(self)
self.hf = HitFinderPanel.HitFinder(self)
self.mk = MaskPanel.MaskMaker(self)
self.img = ImagePanel.ImageViewer(self)
self.roi = RoiPanel.RoiHistogram(self)
self.control = ImageControlPanel.ImageControl(self)
self.mouse = MousePanel.Mouse(self)
self.stack = ImageStackPanel.ImageStack(self)
self.initUI()
def __init__(self, arg_list):
super(MainFrame, self).__init__()
self.args = args
self.area = DockArea()
# Get username
self.username = self.getUsername()
# Set up tolerance
self.eps = np.finfo("float64").eps
self.firstUpdate = True
self.operationModeChoices = ['none', 'masking']
self.operationMode = self.operationModeChoices[
0] # Masking mode, Peak finding mode
# Supported facilities keywords
self.facilityLCLS = 'LCLS'
if 'CFEL' in os.environ['PSOCAKE_FACILITY'].upper():
self.facility = self.facilityLCLS
self.dir = '/gpfs/cfel/cxi/common/slac/reg/d/psdm'
if args.outDir is None:
args.outDir = '/gpfs/cfel/cxi/scratch/user/' + self.username + '/psocake'
elif 'LCLS' in os.environ['PSOCAKE_FACILITY'].upper():
self.facility = self.facilityLCLS
self.dir = '/reg/d/psdm'
# Init experiment parameters from args
if args.expRun is not None and ':run=' in args.expRun:
self.experimentName = args.expRun.split('exp=')[-1].split(':')[0]
self.runNumber = int(args.expRun.split('run=')[-1])
else:
self.experimentName = args.exp
self.runNumber = int(args.run)
self.detInfo = args.det
self.detAlias = None
self.eventNumber = int(args.evt)
self.inputImages = args.inputImages
self.mode = args.mode
self.batch = args.batch.lower()
print(
"\n################################################################"
)
if self.batch == "lsf":
print("Using LSF for batch jobs. Use -b to set batch preference.")
else:
print(
"Using SLURM for batch jobs. Use -b to set batch preference.")
print(
"################################################################")
# Directories
self.psocakeDir = None
self.psocakeRunDir = None
self.elogDir = None
self.rootDir = None
self.writeAccess = True
self.access = args.access.lower()
if 'ffb' in self.access:
print(
"################################################################"
)
print(
"Remember only psfeh(hi)prioq/psneh(hi)prioq can access FFB nodes"
)
print("FFB node is here: /reg/d/ffb/")
print(
"################################################################"
)
# Init variables
self.det = None
self.detnames = None
self.detInfoList = None
self.evt = None
self.eventID = ""
self.hasExperimentName = False
self.hasRunNumber = False
self.hasDetInfo = False
self.pixelIndAssem = None
self.doneExpSetup = False
self.doneRunSetup = False
self.doneDetSetup = False
self.doneEvtSetup = False
self.doneInit = False
# Init diffraction geometry parameters
self.coffset = 0.0
self.clen = 0.0
self.clenEpics = 0.0
self.epics = None
self.detectorDistance = 0.0
self.photonEnergy = None
self.wavelength = None
self.pixelSize = None
self.resolutionRingsOn = False
self.resolution = None
self.resolutionUnits = 0
# Init variables
self.calib = None # ndarray detector image
self.data = None # assembled detector image
self.cx = 0 # detector centre x
self.cy = 0 # detector centre y
## Switch to using white background and black foreground
pg.setConfigOption('background', color.background)
pg.setConfigOption('foreground', color.foreground)
########################################
# Instantiate panels
########################################
self.mouse = MousePanel.Mouse(self)
self.img = ImagePanel.ImageViewer(self)
self.stack = ImageStackPanel.ImageStack(self)
self.exp = ExperimentPanel.ExperimentInfo(self)
self.geom = DiffractionGeometryPanel.DiffractionGeometry(self)
self.roi = RoiPanel.RoiHistogram(self)
self.pk = PeakFindingPanel.PeakFinding(self)
self.index = CrystalIndexingPanel.CrystalIndexing(self)
self.mk = MaskPanel.MaskMaker(self)
self.small = SmallDataPanel.SmallData(self)
self.control = ImageControlPanel.ImageControl(self)
self.hf = HitFinderPanel.HitFinder(self)
if 'label' in args.mode:
self.labeling = LabelingPanel.Labeling(self)
self.scheme()