def test_GO_1():
go = GO.GO('go.obo')
assert 'is_a' in go.relations
assert 'ends_during' in go.relations
assert 'happens_during' in go.relations
assert 'has_part' in go.relations
assert 'negatively_regulates' in go.relations
assert 'never_in_taxon' in go.relations
assert 'occurs_in' in go.relations
assert 'part_of' in go.relations
assert 'positively_regulates' in go.relations
assert 'regulates' in go.relations
assert 'starts_during' in go.relations
#keywords = ['transcription', 'translation', 'transcribed' ]
#keywords = ['cell cycle', 'division' ]
#keywords = [ 'cytoskeleton' ]
#keywords = [ 'metabolism' ]
#keywords = ['Protein folding', 'chaperone', 'heat shock' ]
#keywords = ['proteolysis', 'proteasom', 'ubiquitin' ]
#keywords = [ 'splicing', 'spliceosom' ]
#keywords = [ 'transport', 'localiz' ]
#keywords = [ 'oxidoreduct' ]
#output_file = 'r:/tmp.txt'
if len(sys.argv) == 4:
global go
go_file = sys.argv[1]
keyword = sys.argv[2].replace('"', '')
keywords = [keyword]
output_file = sys.argv[3]
go = GO.GO(obo_file = go_file)
seekGOTerms(keywords, output_file)
print 'DONE'
else:
displayHelp()
def test_GO_2():
go = GO.GO('go.obo')
assert len((go.relations['is_a'], [go.categories['GO:0000022']])) == 2
