def get_form():
"""
@return: the body of a form
"""
# define the default rate matrix
dictionary_rate_matrix = RateMatrix.get_sample_codon_rate_matrix()
labels = list(sorted(set(a for a, b in dictionary_rate_matrix)))
R = MatrixUtil.dict_to_row_major(dictionary_rate_matrix, labels, labels)
R = np.array(R)
form_objects = [
Form.Matrix('matrix', 'rate matrix', R, MatrixUtil.assert_rate_matrix)
]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the default rate matrix
dictionary_rate_matrix = RateMatrix.get_sample_codon_rate_matrix()
labels = list(sorted(set(a for a, b in dictionary_rate_matrix)))
R = MatrixUtil.dict_to_row_major(dictionary_rate_matrix, labels, labels)
R = np.array(R)
form_objects = [
Form.Matrix('matrix', 'rate matrix',
R, MatrixUtil.assert_rate_matrix)]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the default rate matrix
dictionary_rate_matrix = RateMatrix.get_sample_codon_rate_matrix()
labels = Codon.g_sorted_non_stop_codons
R = MatrixUtil.dict_to_row_major(dictionary_rate_matrix, labels, labels)
# define the form objects
form_objects = [
Form.Matrix('matrix', 'codon rate matrix', R,
MatrixUtil.assert_rate_matrix),
Form.Integer('maxcategories', 'maximum number of categories', 5, low=2)
]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the default rate matrix
dictionary_rate_matrix = RateMatrix.get_sample_codon_rate_matrix()
labels = Codon.g_sorted_non_stop_codons
R = MatrixUtil.dict_to_row_major(dictionary_rate_matrix, labels, labels)
# define the form objects
form_objects = [
Form.Matrix('matrix', 'codon rate matrix',
R, MatrixUtil.assert_rate_matrix),
Form.Integer('maxcategories', 'maximum number of categories',
5, low=2)]
return form_objects
