def main():
opts = getArgs()
#
cp = getConfig()
MOUSEMINE = cp.get("DEFAULT", "MOUSEMINEURL")
print('{\n "metaData": %s,\n "data": [' %
json.dumps(buildMetaObject(MOUSEMINE), indent=2))
#
n = 0
for r in sql(REFS_Q):
obj = getObj(r, opts.which)
if obj:
if n > 0: sys.stdout.write(",")
print(json.dumps(obj, indent=2))
n += 1
if opts.doSample and n > 100:
break
#
print(']}')
if r[1] != 'N/A':
emapa2uberon[r[1]] = r[0]
# the set of high level EMAPA term IDs
highlevelemapa = set(emapa2uberon.keys())
#-----------------------------------
# mappings from Theiler stages to UBERON stage term IDs
ts2uberon = dict( \
[('TS%02d'%(i+1),'UBERON:0000068') for i in range(26)] + \
[('TS27','post embryonic, pre-adult')] + \
[('TS28', 'UBERON:0000113')])
#-----------------------------------
# load config settings
cp = getConfig()
#-----------------------------------
# MouseMine connection
MOUSEMINE = cp.get("DEFAULT", "MOUSEMINEURL")
#-----------------------------------
def log(msg):
sys.stderr.write(msg + '\n')
#-----------------------------------
# Returns a mapping from EMAPA id to EMAPA term obj
# Each term has attributes: name, startsAt, endsAt/