def splash_screen():
"""
"""
pm = QPixmap(
pkg_resources.resource_filename(__name__,
"icons/orange-splash-screen.png"))
version = QCoreApplication.applicationVersion()
size = 21 if len(version) < 5 else 16
font = QFont("Helvetica")
font.setPixelSize(size)
font.setBold(True)
font.setItalic(True)
font.setLetterSpacing(QFont.AbsoluteSpacing, 2)
metrics = QFontMetrics(font)
br = metrics.boundingRect(version).adjusted(-5, 0, 5, 0)
br.moveCenter(QPoint(436, 224))
p = QPainter(pm)
p.setRenderHint(QPainter.Antialiasing)
p.setRenderHint(QPainter.TextAntialiasing)
p.setFont(font)
p.setPen(QColor("#231F20"))
p.drawText(br, Qt.AlignCenter, version)
p.end()
return pm, QRect(88, 193, 200, 20)
def data(self, index, role):
row, col = index.row(), index.column()
val = self.variables[row][col]
if role in (Qt.DisplayRole, Qt.EditRole):
if col == Column.tpe:
return self.type2name[val]
if col == Column.place:
return self.places[val]
else:
return val
if role == Qt.DecorationRole:
if col == Column.tpe:
return gui.attributeIconDict[self.vartypes.index(val) + 1]
if role == Qt.ForegroundRole:
if self.variables[row][Column.place] == Place.skip \
and col != Column.place:
return QColor(160, 160, 160)
if role == Qt.BackgroundRole:
place = self.variables[row][Column.place]
mapping = [Place.meta, Place.feature, Place.class_var, None]
return TableModel.ColorForRole.get(mapping[place], None)
if role == Qt.FontRole:
if self.variables[row] != self.orig_variables[row]:
font = QFont()
font.setBold(True)
return font
return None
def _initialize_headers(self):
"""
Fill headers with content and style them.
"""
font = self.tablemodel.invisibleRootItem().font()
bold_font = QFont(font)
bold_font.setBold(True)
for headers, ix in ((self.classesv + [self.corner_string], lambda p:
(p + 2, 1)),
(self.classesh + [self.corner_string], lambda p:
(1, p + 2))):
for p, label in enumerate(headers):
i, j = ix(p)
item = self._item(i, j)
item.setData(label, Qt.DisplayRole)
if self.bold_headers:
item.setFont(bold_font)
if not (i == 1 and self.circles):
item.setTextAlignment(Qt.AlignRight | Qt.AlignVCenter)
item.setFlags(Qt.ItemIsEnabled)
if p < len(headers) - 1:
item.setData("br"[j == 1], BorderRole)
item.setData(QColor(192, 192, 192), BorderColorRole)
else:
item.setData("", BorderRole)
self._set_item(i, j, item)
def splash_screen():
"""
"""
pm = QPixmap(
pkg_resources.resource_filename(
__name__, "icons/orange-splash-screen.png")
)
version = QCoreApplication.applicationVersion()
size = 21 if len(version) < 5 else 16
font = QFont("Helvetica")
font.setPixelSize(size)
font.setBold(True)
font.setItalic(True)
font.setLetterSpacing(QFont.AbsoluteSpacing, 2)
metrics = QFontMetrics(font)
br = metrics.boundingRect(version).adjusted(-5, 0, 5, 0)
br.moveCenter(QPoint(436, 224))
p = QPainter(pm)
p.setRenderHint(QPainter.Antialiasing)
p.setRenderHint(QPainter.TextAntialiasing)
p.setFont(font)
p.setPen(QColor("#231F20"))
p.drawText(br, Qt.AlignCenter, version)
p.end()
return pm, QRect(88, 193, 200, 20)
def _handle_text(self, layout, row):
param = self.controls.get(row, None)
if param is None:
label = QLabel()
label.setOpenExternalLinks(True)
label.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum)
if row.startswith('info:'):
label.setText(row[5:])
font = QFont()
font.setPointSize(10)
label.setFont(font)
label.setAccessibleName('info')
elif row.startswith('h1:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(17)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h1')
elif row.startswith('h2:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(16)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h2')
elif row.startswith('h3:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(15)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h3')
elif row.startswith('h4:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(14)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h4')
elif row.startswith('h5:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(12)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h5')
else:
label.setText(row)
label.setAccessibleName('msg')
label.setToolTip(label.text())
layout.addWidget(label)
else:
param.parent = self
param.name = row
layout.addWidget(param.form)
def data(self, index, role=Qt.DisplayRole):
# Only valid for the first column; derived classes implement the rest
row = index.row()
if role in (Qt.DisplayRole, Qt.EditRole):
return self.attrdescs[row].name
if role == Qt.FontRole:
font = QFont()
font.setBold(True)
return font
if role == Qt.TextAlignmentRole:
return Qt.AlignRight | Qt.AlignVCenter
return None
def data(self, index, role=Qt.DisplayRole):
# pylint: disable=missing-docstring
# Only valid for the first column
row = index.row()
if role == Qt.DisplayRole or role == Qt.EditRole:
return self.variables[row].name
if role == Qt.FontRole:
font = QFont()
font.setBold(True)
return font
if role == Qt.TextAlignmentRole:
return Qt.AlignRight | Qt.AlignVCenter
def data(self, index, role=Qt.DisplayRole):
# pylint: disable=missing-docstring
# Only valid for the first column
row = index.row()
if role == Qt.DisplayRole or role == Qt.EditRole:
return self.variables[row].name
if role == Qt.FontRole:
font = QFont()
font.setBold(True)
return font
if role == Qt.TextAlignmentRole:
return Qt.AlignRight | Qt.AlignVCenter
def data(self, index, role):
if role == self.IsSelected:
return self.is_selected(index)
elif role == Qt.FontRole:
font = QFont()
font.setBold(self.is_selected(index))
return font
elif role == self.SortRole:
if self.is_selected(index):
return self.selected_vars.index(self[index.row()])
else:
return len(self.selected_vars) + index.row()
else:
return super().data(index, role)
def data(self, index, role):
if role == self.IsSelected:
return self.is_selected(index)
elif role == Qt.FontRole:
font = QFont()
font.setBold(self.is_selected(index))
return font
elif role == self.SortRole:
if self.is_selected(index):
return self.selected_vars.index(self[index.row()])
else:
return len(self.selected_vars) + index.row()
else:
return super().data(index, role)
def _init_table(self, nclasses):
item = self._item(0, 2)
item.setData("Predicted", Qt.DisplayRole)
item.setTextAlignment(Qt.AlignCenter)
item.setFlags(Qt.NoItemFlags)
self._set_item(0, 2, item)
item = self._item(2, 0)
item.setData("Actual", Qt.DisplayRole)
item.setTextAlignment(Qt.AlignHCenter | Qt.AlignBottom)
item.setFlags(Qt.NoItemFlags)
self.tableview.setItemDelegateForColumn(0, gui.VerticalItemDelegate())
self._set_item(2, 0, item)
self.tableview.setSpan(0, 2, 1, nclasses)
self.tableview.setSpan(2, 0, nclasses, 1)
font = self.tablemodel.invisibleRootItem().font()
bold_font = QFont(font)
bold_font.setBold(True)
for i in (0, 1):
for j in (0, 1):
item = self._item(i, j)
item.setFlags(Qt.NoItemFlags)
self._set_item(i, j, item)
for p, label in enumerate(self.headers):
for i, j in ((1, p + 2), (p + 2, 1)):
item = self._item(i, j)
item.setData(label, Qt.DisplayRole)
item.setFont(bold_font)
item.setTextAlignment(Qt.AlignRight | Qt.AlignVCenter)
item.setFlags(Qt.ItemIsEnabled)
if p < len(self.headers) - 1:
item.setData("br"[j == 1], BorderRole)
item.setData(QColor(192, 192, 192), BorderColorRole)
self._set_item(i, j, item)
hor_header = self.tableview.horizontalHeader()
if len(' '.join(self.headers)) < 120:
hor_header.setSectionResizeMode(QHeaderView.ResizeToContents)
else:
hor_header.setDefaultSectionSize(60)
self.tablemodel.setRowCount(nclasses + 3)
self.tablemodel.setColumnCount(nclasses + 3)
def _init_table(self, nclasses):
item = self._item(0, 2)
item.setData("Predicted", Qt.DisplayRole)
item.setTextAlignment(Qt.AlignCenter)
item.setFlags(Qt.NoItemFlags)
self._set_item(0, 2, item)
item = self._item(2, 0)
item.setData("Actual", Qt.DisplayRole)
item.setTextAlignment(Qt.AlignHCenter | Qt.AlignBottom)
item.setFlags(Qt.NoItemFlags)
self.tableview.setItemDelegateForColumn(0, gui.VerticalItemDelegate())
self._set_item(2, 0, item)
self.tableview.setSpan(0, 2, 1, nclasses)
self.tableview.setSpan(2, 0, nclasses, 1)
font = self.tablemodel.invisibleRootItem().font()
bold_font = QFont(font)
bold_font.setBold(True)
for i in (0, 1):
for j in (0, 1):
item = self._item(i, j)
item.setFlags(Qt.NoItemFlags)
self._set_item(i, j, item)
for p, label in enumerate(self.headers):
for i, j in ((1, p + 2), (p + 2, 1)):
item = self._item(i, j)
item.setData(label, Qt.DisplayRole)
item.setFont(bold_font)
item.setTextAlignment(Qt.AlignRight | Qt.AlignVCenter)
item.setFlags(Qt.ItemIsEnabled)
if p < len(self.headers) - 1:
item.setData("br"[j == 1], BorderRole)
item.setData(QColor(192, 192, 192), BorderColorRole)
self._set_item(i, j, item)
hor_header = self.tableview.horizontalHeader()
if len(' '.join(self.headers)) < 120:
hor_header.setSectionResizeMode(QHeaderView.ResizeToContents)
else:
hor_header.setDefaultSectionSize(60)
self.tablemodel.setRowCount(nclasses + 3)
self.tablemodel.setColumnCount(nclasses + 3)
class FakeSignatureMixin:
def __init__(self, parent, highlighting_scheme, font):
super().__init__(parent)
self.highlighting_scheme = highlighting_scheme
self.setFont(font)
self.bold_font = QFont(font)
self.bold_font.setBold(True)
self.indentation_level = 0
self._char_4_width = QFontMetrics(font).horizontalAdvance('4444')
def setIndent(self, margins_width):
self.setContentsMargins(
max(
0,
round(margins_width) +
((self.indentation_level - 1) * self._char_4_width)), 0, 0, 0)
def splash_screen():
# type: () -> Tuple[QPixmap, QRect]
"""
Return a splash screen pixmap and an text area within it.
The text area is used for displaying text messages during application
startup.
The default implementation returns a bland rectangle splash screen.
Returns
-------
t : Tuple[QPixmap, QRect]
A QPixmap and a rect area within it.
"""
path = pkg_resources.resource_filename(
__name__, "icons/orange-canvas-core-splash.svg")
pm = QPixmap(path)
version = QCoreApplication.applicationVersion()
if version:
version_parsed = LooseVersion(version)
version_comp = version_parsed.version
version = ".".join(map(str, version_comp[:2]))
size = 21 if len(version) < 5 else 16
font = QFont()
font.setPixelSize(size)
font.setBold(True)
font.setItalic(True)
font.setLetterSpacing(QFont.AbsoluteSpacing, 2)
metrics = QFontMetrics(font)
br = metrics.boundingRect(version).adjusted(-5, 0, 5, 0)
br.moveBottomRight(QPoint(pm.width() - 15, pm.height() - 15))
p = QPainter(pm)
p.setRenderHint(QPainter.Antialiasing)
p.setRenderHint(QPainter.TextAntialiasing)
p.setFont(font)
p.setPen(QColor("#231F20"))
p.drawText(br, Qt.AlignCenter, version)
p.end()
textarea = QRect(15, 15, 170, 20)
return pm, textarea
def splash_screen():
# type: () -> Tuple[QPixmap, QRect]
"""
Return a splash screen pixmap and an text area within it.
The text area is used for displaying text messages during application
startup.
The default implementation returns a bland rectangle splash screen.
Returns
-------
t : Tuple[QPixmap, QRect]
A QPixmap and a rect area within it.
"""
path = pkg_resources.resource_filename(
__name__, "icons/orange-canvas-core-splash.svg")
pm = QPixmap(path)
version = QCoreApplication.applicationVersion()
if version:
version_parsed = LooseVersion(version)
version_comp = version_parsed.version
version = ".".join(map(str, version_comp[:2]))
size = 21 if len(version) < 5 else 16
font = QFont()
font.setPixelSize(size)
font.setBold(True)
font.setItalic(True)
font.setLetterSpacing(QFont.AbsoluteSpacing, 2)
metrics = QFontMetrics(font)
br = metrics.boundingRect(version).adjusted(-5, 0, 5, 0)
br.moveBottomRight(QPoint(pm.width() - 15, pm.height() - 15))
p = QPainter(pm)
p.setRenderHint(QPainter.Antialiasing)
p.setRenderHint(QPainter.TextAntialiasing)
p.setFont(font)
p.setPen(QColor("#231F20"))
p.drawText(br, Qt.AlignCenter, version)
p.end()
textarea = QRect(15, 15, 170, 20)
return pm, textarea
def splash_screen():
path = pkg_resources.resource_filename(__name__,
"icons/tods-splash-screen.png")
pm = QPixmap(path)
version = pkg_resources.get_distribution("tods").version
size = 18 if len(version) < 5 else 16
font = QFont("Helvetica")
font.setPixelSize(size)
font.setBold(True)
font.setItalic(True)
font.setLetterSpacing(QFont.AbsoluteSpacing, 2)
metrics = QFontMetrics(font)
br = metrics.boundingRect(version).adjusted(-5, 0, 5, 0)
br.moveCenter(QPoint(440, 350))
p = QPainter(pm)
p.setRenderHint(QPainter.Antialiasing)
p.setRenderHint(QPainter.TextAntialiasing)
p.setFont(font)
p.setPen(QColor("#231F20"))
p.drawText(br, Qt.AlignCenter, version)
p.end()
return pm, QRect(88, 193, 200, 20)
def generate_panel(self, formset):
"""
Generate a panel for the module form with all the controls
formset format example: [('_video', '_arenas', '_run'), {"Player":['_threshold', "_player", "=", "_results", "_query"], "Background image":[(' ', '_selectBackground', '_paintBackground'), '_image']}, "_progress"]
tuple: will display the controls in the same horizontal line
list: will display the controls in the same vertical line
dict: will display the controls in a tab widget
'||': will plit the controls in a horizontal line
'=': will plit the controls in a vertical line
@param formset: Form configuration
@type formset: list
"""
control = None
if '=' in formset or isinstance(formset, hsplitter):
control = QSplitter(QtCore.Qt.Vertical)
index = list(formset).index('=')
first_panel = self.generate_panel(formset[0:index])
second_panel = self.generate_panel(formset[index + 1:])
control.addWidget(first_panel)
control.addWidget(second_panel)
self._splitters.append(control)
return control
elif '||' in formset or isinstance(formset, vsplitter):
control = QSplitter(QtCore.Qt.Horizontal)
index = list(formset).index('||')
first_panel = self.generate_panel(formset[0:index])
second_panel = self.generate_panel(formset[index + 1:])
control.addWidget(first_panel)
control.addWidget(second_panel)
if isinstance(formset, vsplitter):
sizes = [formset.left_width, formset.right_width]
control.setSizes(sizes)
self._splitters.append(control)
return control
control = QFrame(self)
layout = None
if type(formset) is tuple:
layout = QHBoxLayout()
for row in formset:
if isinstance(row, (list, tuple, vsplitter, hsplitter)):
panel = self.generate_panel(row)
layout.addWidget(panel)
elif row == " ":
spacer = QSpacerItem(40, 20, QSizePolicy.Expanding,
QSizePolicy.Minimum)
layout.addItem(spacer)
elif type(row) is dict:
c = self.generate_tabs(row)
layout.addWidget(c)
self._tabs.append(c)
else:
param = self.controls.get(row, None)
if param is None:
label = QLabel()
label.setSizePolicy(QSizePolicy.Maximum,
QSizePolicy.Maximum)
# layout.addWidget( label )
if row.startswith('info:'):
label.setText(row[5:])
font = QFont()
font.setPointSize(10)
label.setFont(font)
label.setAccessibleName('info')
elif row.startswith('h1:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(17)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h1')
elif row.startswith('h2:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(16)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h2')
elif row.startswith('h3:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(15)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h3')
elif row.startswith('h4:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(14)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h4')
elif row.startswith('h5:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(12)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h5')
else:
label.setText(row)
font = QFont()
font.setPointSize(10)
label.setFont(font)
label.setAccessibleName('msg')
label.setToolTip(label.text())
layout.addWidget(label)
else:
param.parent = self
param.name = row
layout.addWidget(param.form)
elif type(formset) is list:
layout = QVBoxLayout()
for row in formset:
if isinstance(row, (list, tuple, vsplitter, hsplitter)):
panel = self.generate_panel(row)
layout.addWidget(panel)
elif row == " ":
spacer = QSpacerItem(20, 40, QSizePolicy.Minimum,
QSizePolicy.Expanding)
layout.addItem(spacer)
elif type(row) is dict:
c = self.generate_tabs(row)
layout.addWidget(c)
self._tabs.append(c)
else:
param = self.controls.get(row, None)
if param is None:
label = QLabel()
label.setSizePolicy(QSizePolicy.Maximum,
QSizePolicy.Maximum)
label.resize(30, 30)
# layout.addWidget( label )
if row.startswith('info:'):
label.setText(row[5:])
font = QFont()
font.setPointSize(10)
label.setFont(font)
label.setAccessibleName('info')
elif row.startswith('h1:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(17)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h1')
elif row.startswith('h2:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(16)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h2')
elif row.startswith('h3:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(15)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h3')
elif row.startswith('h4:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(14)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h4')
elif row.startswith('h5:'):
label.setText(row[3:])
font = QFont()
font.setPointSize(12)
font.setBold(True)
label.setFont(font)
label.setAccessibleName('h5')
else:
label.setText(row)
font = QFont()
font.setPointSize(10)
label.setFont(font)
label.setAccessibleName('msg')
label.setToolTip(label.text())
layout.addWidget(label)
else:
param.parent = self
param.name = row
layout.addWidget(param.form)
if _api.USED_API == _api.QT_API_PYQT5:
layout.setContentsMargins(0, 0, 0, 0)
elif _api.USED_API == _api.QT_API_PYQT4:
layout.setMargin(0)
control.setLayout(layout)
return control
def __init__(self):
super().__init__()
self.res = None
self.orgnism = 352472
self.server = 'https://dictyexpress.research.bcm.edu'
self.headerLabels = [x[1] for x in Labels]
self.searchString = ""
self.items = []
self.lastSelected = None # store last selected customTreeItem
self.progress_bar = None
# threads
self.threadpool = QThreadPool()
# Login Section
box = gui.widgetBox(self.controlArea, 'Login')
self.namefield = gui.lineEdit(box,
self,
"username",
"Username:"******"password",
"Password:"******"setTimeVariable",
"Set Time variable")
self.time_var_checkBox.setToolTip(
'Create new column where each row represents one time point')
self.controlArea.layout().addWidget(h_line())
self.commit_button = gui.button(self.controlArea,
self,
"Commit",
callback=self.commit)
self.handle_commit_button(False)
self.refresh_button = gui.button(self.controlArea,
self,
"Refresh",
callback=self.refresh)
self.handle_cache_button(True)
gui.rubber(self.controlArea)
# Experiment Section
label = QLabel("Available projects:")
my_font = QFont()
my_font.setBold(True)
label.setFont(my_font)
self.mainArea.layout().addWidget(label)
self.mainArea.layout().addWidget(h_line())
self.filter = gui.lineEdit(self.mainArea,
self,
"searchString",
"Filter:",
callbackOnType=True,
callback=self.search_update)
self.experimentsWidget = QTreeWidget(alternatingRowColors=True,
rootIsDecorated=False,
uniformRowHeights=True,
sortingEnabled=True)
self.experimentsWidget.setItemDelegateForColumn(
0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole))
self.experimentsWidget.selectionModel().selectionChanged.connect(
self.onSelectionChanged)
self.experimentsWidget.setHeaderLabels(self.headerLabels)
self.mainArea.layout().addWidget(self.experimentsWidget)
self.auth_set()
self.connect()
def paint(self, painter, option, index):
image_space = 5
icon = index.data(Qt.DecorationRole)
gene_obj = index.data(Qt.DisplayRole)
bold_font = QFont()
bold_font.setBold(True)
fm = QFontMetrics(QFont())
input_name_str = 'Input name: '
type_of_match_str = 'Input type: '
gene_id_str = 'Gene ID: '
if not icon.isNull():
# paint icon
icon.paint(
painter,
option.rect.adjusted(image_space, image_space, -image_space,
-image_space),
Qt.AlignVCenter | Qt.AlignLeft)
# if image is set, change space variable
image_space = 55
# paint gene object data
# input string
r = option.rect.adjusted(image_space, 7, 0,
0) # left, top, width and height
painter.setFont(bold_font)
painter.drawText(r.left(), r.top(), r.width(), r.height(),
Qt.AlignLeft, input_name_str)
painter.setFont(QFont())
painter.drawText(r.left() + fm.width(input_name_str), r.top(),
r.width(), r.height(), Qt.AlignLeft,
str(gene_obj.input_name))
# gene id string
r = option.rect.adjusted(image_space, 22, 0,
0) # left, top, width and height
painter.setFont(bold_font)
painter.drawText(r.left(), r.top(), r.width(), r.height(),
Qt.AlignLeft, type_of_match_str)
painter.setFont(QFont())
painter.drawText(
r.left() + fm.width(input_name_str), r.top(), r.width(),
r.height(), Qt.AlignLeft,
str(gene_obj.type_of_match)
if gene_obj.type_of_match else 'Unknown')
# type of match string
r = option.rect.adjusted(image_space, 37, 0,
0) # left, top, width and height
painter.setFont(bold_font)
painter.drawText(r.left(), r.top(), r.width(), r.height(),
Qt.AlignLeft, gene_id_str)
painter.setFont(QFont())
painter.drawText(
r.left() + fm.width(input_name_str), r.top(), r.width(),
r.height(), Qt.AlignLeft,
str(gene_obj.ncbi_id) if gene_obj.ncbi_id else 'Unknown')
def __init__(self):
super().__init__()
ConcurrentWidgetMixin.__init__(self)
self._res: Optional[genapi.GenAPI] = None
self.organism = '44689'
self.server = 'https://dictyexpress.research.bcm.edu'
self.headerLabels = [x[1] for x in Labels]
self.searchString = ""
self.items = []
self.genapi_pub_auth = {
'url': genapi.DEFAULT_URL,
'username': genapi.DEFAULT_EMAIL,
'password': genapi.DEFAULT_PASSWD,
}
# Login Section
box = gui.widgetBox(self.controlArea, 'Sign in')
self.user_info = gui.label(box, self, '')
self.server_info = gui.label(box, self, '')
box = gui.widgetBox(box, orientation=Qt.Horizontal)
self.sign_in_btn = gui.button(box,
self,
'Sign In',
callback=self.sign_in,
autoDefault=False)
self.sign_out_btn = gui.button(box,
self,
'Sign Out',
callback=self.sign_out,
autoDefault=False)
box = gui.widgetBox(self.controlArea, "Output")
gui.radioButtonsInBox(box,
self,
"gene_as_attr_name",
["Genes in rows", "Genes in columns"],
callback=self.invalidate)
self.clear_cache_btn = gui.button(self.controlArea,
self,
"Clear cache",
autoDefault=False,
callback=self.clear_cache)
gui.rubber(self.controlArea)
self.commit_button = gui.auto_commit(self.controlArea,
self,
"auto_commit",
"&Commit",
box=False)
# Experiment Section
label = QLabel("Available projects:")
my_font = QFont()
my_font.setBold(True)
label.setFont(my_font)
self.mainArea.layout().addWidget(label)
self.filter = gui.lineEdit(self.mainArea,
self,
"searchString",
"Filter:",
callbackOnType=True,
callback=self.search_update)
self.experimentsWidget = QTreeWidget(alternatingRowColors=True,
rootIsDecorated=False,
uniformRowHeights=True,
sortingEnabled=True)
self.experimentsWidget.setItemDelegateForColumn(
0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole))
self.experimentsWidget.selectionModel().selectionChanged.connect(
self.on_selection_changed)
self.experimentsWidget.setHeaderLabels(self.headerLabels)
self.mainArea.layout().addWidget(self.experimentsWidget)
self.sign_in(silent=True)
self.sizeHint()
def __init__(self):
super().__init__()
self.res = None
self.organism = '44689'
self.server = 'https://dictyexpress.research.bcm.edu'
self.headerLabels = [x[1] for x in Labels]
self.searchString = ""
self.items = []
self.progress_bar = None
# threads
self.threadpool = QThreadPool()
# Login Section
box = gui.widgetBox(self.controlArea, 'Login')
self.namefield = gui.lineEdit(box,
self,
"username",
"Username:"******"password",
"Password:"******"Output", addSpace=True)
gui.radioButtonsInBox(box,
self,
"gene_as_attr_name",
["Genes in rows", "Genes in columns"],
callback=self.invalidate)
self.controlArea.layout().addWidget(h_line())
self.refresh_button = gui.button(self.controlArea,
self,
"Refresh",
callback=self.refresh)
self.handle_cache_button(True)
gui.rubber(self.controlArea)
self.commit_button = gui.auto_commit(self.controlArea,
self,
"auto_commit",
"&Commit",
box=False)
# Experiment Section
label = QLabel("Available projects:")
my_font = QFont()
my_font.setBold(True)
label.setFont(my_font)
self.mainArea.layout().addWidget(label)
self.mainArea.layout().addWidget(h_line())
self.filter = gui.lineEdit(self.mainArea,
self,
"searchString",
"Filter:",
callbackOnType=True,
callback=self.search_update)
self.experimentsWidget = QTreeWidget(alternatingRowColors=True,
rootIsDecorated=False,
uniformRowHeights=True,
sortingEnabled=True)
self.experimentsWidget.setItemDelegateForColumn(
0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole))
self.experimentsWidget.selectionModel().selectionChanged.connect(
self.on_selection_changed)
self.experimentsWidget.setHeaderLabels(self.headerLabels)
self.mainArea.layout().addWidget(self.experimentsWidget)
self.auth_set()
self.connect()
self.sizeHint()
