#display the organel, the box, and prepare the hierachy... doc = helper.getCurrentScene() sel = doc.GetSelection() c4dorganlle = sel[0] helper.triangulate(c4dorganlle) faces,vertices,vnormals = helper.DecomposeMesh(c4dorganlle,edit=True,copy=True,tri=True) o1 = Organelle(vertices, faces, vnormals) h1.addOrganelle(o1) o1.setSurfaceRecipe(rSurf1) #o1.setInnerRecipe(rCyto) #define the viewer type dejavu,c4d,blender ViewerType='c4d' afviewer = AFViewer(ViewerType=ViewerType) #make some option here afviewer.doPoints = False afviewer.doSpheres = False afviewer.quality = 1 #lowest quality for sphere and cylinder h1.setMinMaxProteinSize() print 'Cyto', rCyto.getMinMaxProteinSize() print 'Surf', rSurf1.getMinMaxProteinSize() print 'Matrix', rMatrix1.getMinMaxProteinSize() #print 'o1', o1.getMinMaxProteinSize() print 'smallest', h1.smallestProteinSize print 'largest', h1.largestProteinSize pad = 100.
#display the organel, the box, and prepare the hierachy...
doc = helper.getCurrentScene()
sel = doc.GetSelection()
c4dorganlle = sel[0]
helper.triangulate(c4dorganlle)
faces,vertices,vnormals = helper.DecomposeMesh(c4dorganlle,edit=True,copy=True,tri=True)
o1 = Organelle(vertices, faces, vnormals)
h1.addOrganelle(o1)
o1.setSurfaceRecipe(rSurf1)
#o1.setInnerRecipe(rCyto)
#define the viewer type dejavu,c4d,blender
ViewerType='c4d'
afviewer = AFViewer(ViewerType=ViewerType)
#make some option here
afviewer.doPoints = False
afviewer.doSpheres = False
afviewer.quality = 1 #lowest quality for sphere and cylinder
h1.setMinMaxProteinSize()
print('Cyto', rCyto.getMinMaxProteinSize())
print('Surf', rSurf1.getMinMaxProteinSize())
print('Matrix', rMatrix1.getMinMaxProteinSize())
#print 'o1', o1.getMinMaxProteinSize()
print('smallest', h1.smallestProteinSize)
print('largest', h1.largestProteinSize)
pad = 100.
helper =helperClass()
else :
import upy
helperClass = upy.getHelperClass()
helper =helperClass(vi="nogui")
AutoFill.helper = helper
filename = "/Users/ludo/DEV/autofill_svn/trunk/AutoFillClean/autoFillRecipeScripts/2DsphereFill/Test_Spheres2D1.0.xml"
fileName, fileExtension = os.path.splitext(filename)
n=os.path.basename(fileName)
h = Environment(name=n)
recipe=n
h.load_XML(filename)
afviewer=None
if not NOGUI :
setattr(h,"helper",helper)
afviewer = AFViewer(ViewerType=h.helper.host,helper=h.helper)
afviewer.SetHistoVol(h,20.0,display=False)
h.host=h.helper.host
afviewer.displayPreFill()
h.saveResult = True
ingr=h.exteriorRecipe.ingredients[0]
resultfilename = h.resultfile = wrkDir+os.sep+"autoFillRecipeScripts/2DsphereFill/results/Test.afr"
h.buildGrid(boundingBox=h.boundingBox,gridFileIn=None,rebuild=True ,
gridFileOut=None,previousFill=False)
pack_multi(h,ncpus=1)
if not NOGUI :
afviewer.displayFill()
#load ?
#result,orgaresult,freePoint=h.load(resultfilename=resultfilename,restore_grid=False)#load text ?#this will restore the grid
#ingredients = h.restore(result,orgaresult,freePoint)
helper = helperClass()
else:
import upy
helperClass = upy.getHelperClass()
helper = helperClass(vi="nogui")
AutoFill.helper = helper
filename = "/Users/ludo/DEV/autofill_svn/trunk/AutoFillClean/autoFillRecipeScripts/2DsphereFill/Test_Spheres2D1.0.xml"
fileName, fileExtension = os.path.splitext(filename)
n = os.path.basename(fileName)
h = Environment(name=n)
recipe = n
h.load_XML(filename)
afviewer = None
if not NOGUI:
setattr(h, "helper", helper)
afviewer = AFViewer(ViewerType=h.helper.host, helper=h.helper)
afviewer.SetHistoVol(h, 20.0, display=False)
h.host = h.helper.host
afviewer.displayPreFill()
h.saveResult = True
ingr = h.exteriorRecipe.ingredients[0]
resultfilename = h.resultfile = wrkDir + os.sep + "autoFillRecipeScripts/2DsphereFill/results/Test.afr"
h.buildGrid(boundingBox=h.boundingBox,
gridFileIn=None,
rebuild=True,
gridFileOut=None,
previousFill=False)
pack_multi(h, ncpus=1)
if not NOGUI:
afviewer.displayFill()