def show(self):
from Base.utility import getDirSpace, getDirSpaceINI
global dialog
global ui
ui = Ui_frmWholeBrainROI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget_2.setCurrentIndex(0)
# Load Setting History
history = History()
histories = history.load_history()
ui.txtSSSetting.clear()
for history in histories:
ui.txtSSSetting.addItem(history)
ui.txtSSSetting.setCurrentText("")
# Default Values for Input File
ui.txtSSInFile.addItem(
"$MAINDIR$/sub-$SUB$/func/sub-$SUB$_task-$TASK$_run-$RUN$_analyze.feat/mask.nii.gz"
)
ui.txtSSInFile.addItem(
"$MAINDIR$/sub-$SUB$/func/sub-$SUB$_task-$TASK$_run-$RUN$_analyze.feat/std_mask.nii.gz"
)
# Default Values for Metric
ui.cbMetric.addItem("Intersection of voxels from all masks", "inter")
# Default Values for Space
ui.txtSSSpace.addItem(DefaultSpace())
ProgramPath = os.path.dirname(os.path.abspath(__file__))
try:
spaceINI = str.rsplit(open(getDirSpaceINI()).read(), "\n")
for space in spaceINI:
if len(space):
ui.txtSSSpace.addItem(getDirSpace() + space)
ui.txtSSSpace.setCurrentIndex(0)
except:
msgBox = QMessageBox()
msgBox.setText("Cannot find MNI files!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
dialog.setWindowTitle("easy fMRI whole brain ROI - V" + getVersion() +
"B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMatNITF()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# SS Default Values for Space
try:
spaceINI = str.rsplit(open(getDirSpaceINI()).read(), "\n")
for space in spaceINI:
if len(space):
ui.txtSSSpace.addItem(getDirSpace() + space)
ui.txtSSSpace.setCurrentIndex(1)
except:
msgBox = QMessageBox()
msgBox.setText("Cannot find MNI files!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
afni = AFNI()
afni.setting()
if not afni.Validate:
msgBox = QMessageBox()
msgBox.setText("Cannot find AFNI setting!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
else:
ui.txtFAFNI.setText(afni.COPY)
ui.txtFSUMA.setText(afni.REFIT)
# Default Values for Threshold type
ui.cbThType.addItem("Without Thresholding", "no")
ui.cbThType.addItem("Minimum Thresholding", "min")
ui.cbThType.addItem("Maximum Thresholding", "max")
ui.cbThType.addItem("Extremum Thresholding", "ext")
dialog.setWindowTitle("easy fMRI Convert Matrix to Nifti1 - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def set_defaults(self):
from Base.utility import getDirSpace, getDirSpaceINI
global ui
# Default Values for Space
ui.txtSpace.clear()
try:
spaceINI = str.rsplit(open(getDirSpaceINI()).read(), "\n")
for space in spaceINI:
if len(space):
ui.txtSpace.addItem(getDirSpace() + space)
ui.txtSpace.setCurrentIndex(0)
except:
msgBox = QMessageBox()
msgBox.setText("Cannot find MNI files!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
# Search items
ui.cbSearch.clear()
ui.cbSearch.addItem("Already virtually aligned (no search)")
ui.cbSearch.addItem("Not aligned, but same orientation")
ui.cbSearch.addItem("Incorrect oriented")
ui.cbSearch.setCurrentIndex(1)
# Cost Function
ui.cbCostFunction.clear()
ui.cbCostFunction.addItem("Correlation Ratio", "corratio")
ui.cbCostFunction.addItem("Mutual Information", "mutualinfo")
ui.cbCostFunction.addItem("Normalised Mutual Information", "normmi")
ui.cbCostFunction.addItem("Normalised Correlation (intra-modal)",
"normcorr")
ui.cbCostFunction.addItem("Least Squares (intra-modal)", "leastsq")
# Interpolation
ui.cbInter.clear()
ui.cbInter.addItem("Tri-Linear", "trilinear")
ui.cbInter.addItem("Nearest Neighbour", "nearestneighbour")
ui.cbInter.addItem("Spline", "spline")