def testParseDomain(self):
s = ">d1tpt_1 a.46.2.1 (1-70) Thymidine phosphorylase {Escherichia coli}"
dom = parse_domain(s)
self.assertEqual(dom.sid, "d1tpt_1")
self.assertEqual(dom.sccs, "a.46.2.1")
self.assertEqual(dom.residues.pdbid, "1tpt")
self.assertEqual(dom.description,
"Thymidine phosphorylase {Escherichia coli}")
s2 = "d1tpt_1 a.46.2.1 (1tpt 1-70) Thymidine phosphorylase {E. coli}"
self.assertEqual(s2, str(parse_domain(s2)))
# Genetic domains (See Astral release notes)
s3 = "g1cph.1 g.1.1.1 (1cph B:,A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s3, str(parse_domain(s3)))
s4 = "e1cph.1a g.1.1.1 (1cph A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s4, str(parse_domain(s4)))
# Raw Astral header
s5 = ">e1cph.1a g.1.1.1 (A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s4, str(parse_domain(s5)))
self.assertRaises(ValueError, parse_domain, "Totally wrong")
def testParseDomain(self):
s = ">d1tpt_1 a.46.2.1 (1-70) Thymidine phosphorylase {Escherichia coli}"
dom = parse_domain(s)
self.assertEqual(dom.sid, 'd1tpt_1')
self.assertEqual(dom.sccs, 'a.46.2.1')
self.assertEqual(dom.residues.pdbid, '1tpt')
self.assertEqual(dom.description, 'Thymidine phosphorylase {Escherichia coli}')
s2 = "d1tpt_1 a.46.2.1 (1tpt 1-70) Thymidine phosphorylase {E. coli}"
self.assertEqual(s2, str(parse_domain(s2)))
# Genetic domains (See Astral release notes)
s3 = "g1cph.1 g.1.1.1 (1cph B:,A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s3, str(parse_domain(s3)))
s4 = "e1cph.1a g.1.1.1 (1cph A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s4, str(parse_domain(s4)))
# Raw Astral header
s5 = ">e1cph.1a g.1.1.1 (A:) Insulin {Cow (Bos taurus)}"
self.assertEqual(s4, str(parse_domain(s5)))
self.assertRaises(ValueError, parse_domain, "Totally wrong")