コード例 #1
0
ファイル: summary.py プロジェクト: chapmanb/biosqlweb
 def _get_bioentries(self, biodb_name, start=0, limit=10):
     """Retreive bioentries associated with the database.
     """
     start = int(request.params.get('start', start))
     limit = int(request.params.get('limit', limit))
     biosql_db = BioSeqDatabase.open_database()
     try:
         biodb = biosql_db[biodb_name]
     except KeyError:
         return []
     biodb = biodb.get_biodatabase()
     return biodb.bioentries[start:start+limit]
コード例 #2
0
ファイル: summary.py プロジェクト: chapmanb/biosqlweb
 def genbank_upload(self, *args, **kwargs):
     # XXX hack for os.linesep not being present; where did it go?
     os.linesep = "\n"
     biodb_name = config.get("biosql_biodb_name")
     biosql_db = BioSeqDatabase.open_database()
     try:
         biodb = biosql_db[biodb_name]
     except KeyError:
         biodb = biosql_db.new_database(biodb_name)
     handle = request.params['upload_file'].file
     biodb.load(SeqIO.parse(handle, "genbank"))
     handle.close()
     response.headers['content-type'] = 'text/javascript'
     return json.dumps(dict())