コード例 #1
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def loadFeatureCountsSummary(infiles, outfile):
    '''load feature counts summary data into table.'''
    infiles = [P.snip(x, ".gz") + ".summary" for x in infiles]
    P.mergeAndLoad(infiles, outfile, options="--index=track")
コード例 #2
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ファイル: pipeline_windows.py プロジェクト: pombredanne/cgat 
def loadCpGCoverage( infiles, outfile ):
    '''load cpg coverag data.'''
    P.mergeAndLoad( infiles, outfile, 
                    regex="/(.*).cpg_coverage.gz",
                    row_wise = False )
コード例 #3
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ファイル: pipeline_medip.py プロジェクト: lesheng/cgat 
def loadCpGCoverage(infiles, outfile):
    '''load cpg coverag data.'''
    P.mergeAndLoad(infiles, outfile, regex="/(.*).prep.cpg_coverage.gz",
                   row_wise=False)
コード例 #4
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def loadFeatureCountsSummary(infiles, outfile):
    '''load feature counts summary data into table.'''
    infiles = [P.snip(x, ".gz") + ".summary" for x in infiles]
    P.mergeAndLoad(infiles, outfile, options="--index=track")
コード例 #5
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def loadHypergeometricResultsSummary(infiles, outfile):
    '''load GO summary results.'''
    infiles = glob.glob("hypergeometric.dir/*/*.parameters")
    P.mergeAndLoad(infiles, outfile)
コード例 #6
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def loadHypergeometricResultsSummary(infiles, outfile):
    '''load GO summary results.'''
    infiles = glob.glob("hypergeometric.dir/*/*.parameters")
    P.mergeAndLoad(infiles, outfile)