###################################################################
# primary targets
###################################################################
@follows(mkdir("report"))
def build_report():
'''build report from scratch.'''
E.info("starting report build process from scratch")
P.run_report(clean=True)
@follows(mkdir("report"))
def update_report():
'''update report.'''
E.info("updating report")
P.run_report(clean=False)
@follows(update_report)
def publish_report():
'''publish report.'''
E.info("publishing report")
P.publish_report()
if __name__ == "__main__":
sys.exit(P.main(sys.argv))
def main(argv=None):
if argv is None:
argv = sys.argv
P.main(argv)
'''
E.info("starting report build process from scratch")
P.run_report(clean=True)
@follows(mkdir("report"))
def update_report():
'''update report.
This will update a report with any changes inside the report
document or code. Note that updates to the data will not cause
relevant sections to be updated. Use the cgatreport-clean utility
first.
'''
E.info("updating report")
P.run_report(clean=False)
@follows(update_report)
def publish_report():
'''publish report in the CGAT downloads directory.'''
E.info("publishing report")
P.publish_report()
if __name__ == "__main__":
sys.exit(P.main(sys.argv))
def main(argv=None):
if argv is None:
argv = sys.argv
P.main(argv)
