def _processSubStack(dsr):
"""Helper to process stack in parallel"""
sf = dsr[0];
pp = dsr[1];
sub = dsr[2];
verbose = dsr[3];
timer = Timer();
pw = ProcessWriter(sub["stackId"]);
if verbose:
pw.write("processing substack " + str(sub["stackId"]) + "/" + str(sub["nStacks"]));
pw.write("file = " + sub["source"]);
pw.write("segmentation = " + str(sf));
pw.write("ranges: x,y,z = " + str(sub["x"]) + "," + str(sub["y"]) + "," + str(sub["z"]));
img = io.readData(sub["source"], x = sub["x"], y = sub["y"], z = sub["z"]);
if verbose:
pw.write(timer.elapsedTime(head = 'Reading data of size ' + str(img.shape)));
timer.reset();
seg = sf(img, subStack = sub, out = pw, **pp);
if verbose:
pw.write(timer.elapsedTime(head = 'Processing substack of size ' + str(img.shape)));
return seg;
def _processSubStack(dsr):
"""Helper to process stack in parallel"""
sf = dsr[0];
pp = dsr[1];
sub = dsr[2];
verbose = dsr[3];
timer = Timer();
pw = ProcessWriter(sub["stackId"]);
if verbose:
pw.write("processing substack " + str(sub["stackId"]) + "/" + str(sub["nStacks"]));
pw.write("file = " + sub["source"]);
pw.write("segmentation = " + str(sf));
pw.write("ranges: x,y,z = " + str(sub["x"]) + "," + str(sub["y"]) + "," + str(sub["z"]));
img = io.readData(sub["source"], x = sub["x"], y = sub["y"], z = sub["z"]);
if verbose:
pw.write(timer.elapsedTime(head = 'Reading data of size ' + str(img.shape)));
timer.reset();
seg = sf(img, subStack = sub, out = pw, **pp);
if verbose:
pw.write(timer.elapsedTime(head = 'Processing substack of size ' + str(img.shape)));
return seg;
