def __format_episode_as_timeline_xml(episode, patient):
data = {
'category': _('Episodes'),
'start': format_pydt(episode.best_guess_clinical_start_date),
'container_id': gmTools.coalesce (
value2test = episode['pk_health_issue'],
return_instead = '',
template4value = '(%s)'
),
'label': gmTools.xml_escape_string (
gmTools.shorten_words_in_line(text = episode['description'], max_length = 20, min_word_length = 5)
),
'ends2day': gmTools.bool2subst(episode['episode_open'], 'True', 'False'),
'progress': gmTools.bool2subst(episode['episode_open'], '0', '100'),
'desc': gmTools.xml_escape_string(episode.format (
patient = patient,
with_summary = True,
with_codes = True,
with_encounters = True,
with_documents = False,
with_hospital_stays = False,
with_procedures = False,
with_family_history = False,
with_tests = False,
with_vaccinations = False,
with_health_issue = True
).strip().strip('\n').strip())
}
end = episode.best_guess_clinical_end_date
if end is None:
data['end'] = format_pydt(now)
else:
data['end'] = format_pydt(end)
return __xml_episode_template % data
def __format_episode_as_timeline_xml(episode, patient):
data = {
'category': _('Episodes'),
'start': format_pydt(episode.best_guess_clinical_start_date),
'container_id': gmTools.coalesce(episode['pk_health_issue'], '', '(%s)'),
'label': gmTools.xml_escape_string (
gmTools.shorten_words_in_line(text = episode['description'], max_length = 20, min_word_length = 5)
),
'ends2day': gmTools.bool2subst(episode['episode_open'], 'True', 'False'),
'progress': gmTools.bool2subst(episode['episode_open'], '0', '100'),
'desc': gmTools.xml_escape_string(episode.format (
patient = patient,
with_summary = True,
with_codes = True,
with_encounters = True,
with_documents = False,
with_hospital_stays = False,
with_procedures = False,
with_family_history = False,
with_tests = False,
with_vaccinations = False,
with_health_issue = True
).strip().strip('\n').strip())
}
end = episode.best_guess_clinical_end_date
if end is None:
data['end'] = format_pydt(now)
else:
data['end'] = format_pydt(end)
return __xml_episode_template % data
def __format_document_as_timeline_xml(doc):
desc = gmTools.shorten_words_in_line(text=doc['l10n_type'],
max_length=20,
min_word_length=5)
return __xml_document_template % (
format_pydt(doc['clin_when']), format_pydt(
doc['clin_when']), gmTools.xml_escape_string(desc), _('Documents'),
gmTools.xml_escape_string(doc.format().strip().strip('\n').strip()))
def __format_document_as_timeline_xml(doc):
desc = gmTools.shorten_words_in_line(text = doc['l10n_type'], max_length = 20, min_word_length = 5)
return __xml_document_template % (
format_pydt(doc['clin_when']),
format_pydt(doc['clin_when']),
gmTools.xml_escape_string(desc),
_('Documents'),
gmTools.xml_escape_string(doc.format().strip().strip('\n').strip())
)
def __format_health_issue_as_timeline_xml(issue, patient, emr):
# container IDs are supposed to be numeric
# [email protected]
data = {'category': _('Health issues')}
possible_start = issue.possible_start_date
safe_start = issue.safe_start_date
end = issue.clinical_end_date
ends_today = 'False'
if end is None:
# open episode or active
ends_today = 'True'
end = now
# somewhat hacky and not really correct:
start2use = safe_start
if safe_start > end:
if possible_start < end:
start2use = possible_start
else:
start2use = end
data['desc'] = gmTools.xml_escape_string(
issue.format(patient=patient,
with_summary=True,
with_codes=True,
with_episodes=True,
with_encounters=False,
with_medications=False,
with_hospital_stays=False,
with_procedures=False,
with_family_history=False,
with_documents=False,
with_tests=False,
with_vaccinations=False).strip().strip('\n').strip())
label = gmTools.shorten_words_in_line(text=issue['description'],
max_length=25,
min_word_length=5)
xml = ''
# if possible_start < safe_start:
# data['start'] = format_pydt(possible_start)
# data['end'] = format_pydt(safe_start)
# data['ends2day'] = 'False'
# data['fuzzy'] = 'True'
# data['container_id'] = ''
# data['label'] = '?%s?' % gmTools.xml_escape_string(label)
# xml += __xml_issue_template % data
data['start'] = format_pydt(start2use)
data['end'] = format_pydt(end)
data['ends2day'] = ends_today
data['fuzzy'] = 'False'
data['container_id'] = '[%s]' % issue['pk_health_issue']
data['label'] = gmTools.xml_escape_string(label)
xml += __xml_issue_template % data
return xml
def __format_procedure_as_timeline_xml(proc):
if proc['is_ongoing']:
end = now
else:
if proc['clin_end'] is None:
end = proc['clin_when']
else:
end = proc['clin_end']
desc = gmTools.shorten_words_in_line(text=proc['performed_procedure'],
max_length=20,
min_word_length=5)
return __xml_procedure_template % (
format_pydt(proc['clin_when']), format_pydt(end),
gmTools.xml_escape_string(desc), _('Procedures'),
gmTools.xml_escape_string(
proc.format(include_episode=True,
include_codes=True).strip().strip('\n').strip()))
def __format_health_issue_as_timeline_xml(issue, patient, emr): # container IDs are supposed to be numeric # [email protected] data = {'category': _('Health issues')} possible_start = issue.possible_start_date safe_start = issue.safe_start_date end = issue.clinical_end_date ends_today = 'False' if end is None: # open episode or active ends_today = 'True' end = now data['desc'] = gmTools.xml_escape_string(issue.format ( patient = patient, with_summary = True, with_codes = True, with_episodes = True, with_encounters = False, with_medications = False, with_hospital_stays = False, with_procedures = False, with_family_history = False, with_documents = False, with_tests = False, with_vaccinations = False ).strip().strip('\n').strip()) label = gmTools.shorten_words_in_line(text = issue['description'], max_length = 25, min_word_length = 5) xml = '' # if possible_start < safe_start: # data['start'] = format_pydt(possible_start) # data['end'] = format_pydt(safe_start) # data['ends2day'] = 'False' # data['fuzzy'] = 'True' # data['container_id'] = '' # data['label'] = '?%s?' % gmTools.xml_escape_string(label) # xml += __xml_issue_template % data data['start'] = format_pydt(safe_start) data['end'] = format_pydt(end) data['ends2day'] = ends_today data['fuzzy'] = 'False' data['container_id'] = '[%s]' % issue['pk_health_issue'] data['label'] = gmTools.xml_escape_string(label) xml += __xml_issue_template % data return xml
def __format_procedure_as_timeline_xml(proc):
if proc['is_ongoing']:
end = now
else:
if proc['clin_end'] is None:
end = proc['clin_when']
else:
end = proc['clin_end']
desc = gmTools.shorten_words_in_line(text = proc['performed_procedure'], max_length = 20, min_word_length = 5)
return __xml_procedure_template % (
format_pydt(proc['clin_when']),
format_pydt(end),
gmTools.xml_escape_string(desc),
_('Procedures'),
gmTools.xml_escape_string(proc.format (
include_episode = True,
include_codes = True
).strip().strip('\n').strip())
)
