#!/usr/bin/python
import IMP
import IMP.em2d as em2d
import os
from math import *
import re
import sys
if(len(sys.argv) <2):
print "Parameters: <1>"
print "<1> Selection file with the names of the the EM images"
sys.exit()
fn_images_names = sys.argv[1]
images_names = em2d.read_selection_file(fn_images_names)
srw = em2d.SpiderImageReaderWriter()
images=em2d.read_images(images_names,srw)
# Replace the extension .spi for .jpg
jpg_names=[]
for s in images_names:
jpg_names.append(re.sub(".spi",".jpg",s))
jrw = em2d.JPGImageReaderWriter()
em2d.save_images(images,jpg_names,jrw)
import IMP
import IMP.em2d as em2d
import os
"""
Conversion of Electron Microscopy Images.
"""
# Read images
fn_selection=em2d.get_example_path("all-1z5s-projections.sel")
srw = em2d.SpiderImageReaderWriter()
trw = em2d.TIFFImageReaderWriter()
fn_images=em2d.read_selection_file(fn_selection)
fn_images = [em2d.get_example_path(x) for x in fn_images]
images = em2d.read_images(fn_images,srw)
# write
fn_saved=em2d.create_filenames(3,"1z5s-projection","tif")
em2d.save_images(images,fn_saved,trw)
## \example em2d/em_images_conversion.py
# Conversion of Electron Microscopy Images.
#
import IMP
import IMP.em2d as em2d
import os
"""
Conversion of Electron Microscopy Images.
"""
# Read images
fn_selection = em2d.get_example_path("all-1z5s-projections.sel")
srw = em2d.SpiderImageReaderWriter()
trw = em2d.TIFFImageReaderWriter()
fn_images = em2d.read_selection_file(fn_selection)
fn_images = [em2d.get_example_path(x) for x in fn_images]
images = em2d.read_images(fn_images, srw)
# write
fn_saved = em2d.create_filenames(3, "1z5s-projection", "tif")
em2d.save_images(images, fn_saved, trw)
