class Bar(Configurable):
b = Integer(0, config=True, help="The integer b.")
enabled = Bool(True, config=True, help="Enable bar.")
class HistoryManager(HistoryAccessor):
"""A class to organize all history-related functionality in one place.
"""
# Public interface
# An instance of the IPython shell we are attached to
shell = Instance('IPython.core.interactiveshell.InteractiveShellABC')
# Lists to hold processed and raw history. These start with a blank entry
# so that we can index them starting from 1
input_hist_parsed = List([""])
input_hist_raw = List([""])
# A list of directories visited during session
dir_hist = List()
def _dir_hist_default(self):
try:
return [os.getcwd()]
except OSError:
return []
# A dict of output history, keyed with ints from the shell's
# execution count.
output_hist = Dict()
# The text/plain repr of outputs.
output_hist_reprs = Dict()
# The number of the current session in the history database
session_number = Integer()
# Should we log output to the database? (default no)
db_log_output = Bool(False, config=True)
# Write to database every x commands (higher values save disk access & power)
# Values of 1 or less effectively disable caching.
db_cache_size = Integer(0, config=True)
# The input and output caches
db_input_cache = List()
db_output_cache = List()
# History saving in separate thread
save_thread = Instance('IPython.core.history.HistorySavingThread')
try: # Event is a function returning an instance of _Event...
save_flag = Instance(threading._Event)
except AttributeError: # ...until Python 3.3, when it's a class.
save_flag = Instance(threading.Event)
# Private interface
# Variables used to store the three last inputs from the user. On each new
# history update, we populate the user's namespace with these, shifted as
# necessary.
_i00 = Unicode('')
_i = Unicode('')
_ii = Unicode('')
_iii = Unicode('')
# A regex matching all forms of the exit command, so that we don't store
# them in the history (it's annoying to rewind the first entry and land on
# an exit call).
_exit_re = re.compile(r"(exit|quit)(\s*\(.*\))?$")
def __init__(self, shell=None, config=None, **traits):
"""Create a new history manager associated with a shell instance.
"""
# We need a pointer back to the shell for various tasks.
super(HistoryManager, self).__init__(shell=shell,
config=config,
**traits)
self.save_flag = threading.Event()
self.db_input_cache_lock = threading.Lock()
self.db_output_cache_lock = threading.Lock()
if self.hist_file != ':memory:':
self.save_thread = HistorySavingThread(self)
self.save_thread.start()
self.new_session()
def _get_hist_file_name(self, profile=None):
"""Get default history file name based on the Shell's profile.
The profile parameter is ignored, but must exist for compatibility with
the parent class."""
profile_dir = self.shell.profile_dir.location
return os.path.join(profile_dir, 'history.sqlite')
@needs_sqlite
def new_session(self, conn=None):
"""Get a new session number."""
if conn is None:
conn = self.db
with conn:
cur = conn.execute(
"""INSERT INTO sessions VALUES (NULL, ?, NULL,
NULL, "") """, (datetime.datetime.now(), ))
self.session_number = cur.lastrowid
def end_session(self):
"""Close the database session, filling in the end time and line count."""
self.writeout_cache()
with self.db:
self.db.execute(
"""UPDATE sessions SET end=?, num_cmds=? WHERE
session==?""",
(datetime.datetime.now(), len(self.input_hist_parsed) - 1,
self.session_number))
self.session_number = 0
def name_session(self, name):
"""Give the current session a name in the history database."""
with self.db:
self.db.execute("UPDATE sessions SET remark=? WHERE session==?",
(name, self.session_number))
def reset(self, new_session=True):
"""Clear the session history, releasing all object references, and
optionally open a new session."""
self.output_hist.clear()
# The directory history can't be completely empty
self.dir_hist[:] = [os.getcwd()]
if new_session:
if self.session_number:
self.end_session()
self.input_hist_parsed[:] = [""]
self.input_hist_raw[:] = [""]
self.new_session()
# ------------------------------
# Methods for retrieving history
# ------------------------------
def _get_range_session(self, start=1, stop=None, raw=True, output=False):
"""Get input and output history from the current session. Called by
get_range, and takes similar parameters."""
input_hist = self.input_hist_raw if raw else self.input_hist_parsed
n = len(input_hist)
if start < 0:
start += n
if not stop or (stop > n):
stop = n
elif stop < 0:
stop += n
for i in range(start, stop):
if output:
line = (input_hist[i], self.output_hist_reprs.get(i))
else:
line = input_hist[i]
yield (0, i, line)
def get_range(self, session=0, start=1, stop=None, raw=True, output=False):
"""Retrieve input by session.
Parameters
----------
session : int
Session number to retrieve. The current session is 0, and negative
numbers count back from current session, so -1 is previous session.
start : int
First line to retrieve.
stop : int
End of line range (excluded from output itself). If None, retrieve
to the end of the session.
raw : bool
If True, return untranslated input
output : bool
If True, attempt to include output. This will be 'real' Python
objects for the current session, or text reprs from previous
sessions if db_log_output was enabled at the time. Where no output
is found, None is used.
Returns
-------
An iterator over the desired lines. Each line is a 3-tuple, either
(session, line, input) if output is False, or
(session, line, (input, output)) if output is True.
"""
if session <= 0:
session += self.session_number
if session == self.session_number: # Current session
return self._get_range_session(start, stop, raw, output)
return super(HistoryManager, self).get_range(session, start, stop, raw,
output)
## ----------------------------
## Methods for storing history:
## ----------------------------
def store_inputs(self, line_num, source, source_raw=None):
"""Store source and raw input in history and create input cache
variables _i*.
Parameters
----------
line_num : int
The prompt number of this input.
source : str
Python input.
source_raw : str, optional
If given, this is the raw input without any IPython transformations
applied to it. If not given, ``source`` is used.
"""
if source_raw is None:
source_raw = source
source = source.rstrip('\n')
source_raw = source_raw.rstrip('\n')
# do not store exit/quit commands
if self._exit_re.match(source_raw.strip()):
return
self.input_hist_parsed.append(source)
self.input_hist_raw.append(source_raw)
with self.db_input_cache_lock:
self.db_input_cache.append((line_num, source, source_raw))
# Trigger to flush cache and write to DB.
if len(self.db_input_cache) >= self.db_cache_size:
self.save_flag.set()
# update the auto _i variables
self._iii = self._ii
self._ii = self._i
self._i = self._i00
self._i00 = source_raw
# hackish access to user namespace to create _i1,_i2... dynamically
new_i = '_i%s' % line_num
to_main = {
'_i': self._i,
'_ii': self._ii,
'_iii': self._iii,
new_i: self._i00
}
self.shell.push(to_main, interactive=False)
def store_output(self, line_num):
"""If database output logging is enabled, this saves all the
outputs from the indicated prompt number to the database. It's
called by run_cell after code has been executed.
Parameters
----------
line_num : int
The line number from which to save outputs
"""
if (not self.db_log_output) or (line_num
not in self.output_hist_reprs):
return
output = self.output_hist_reprs[line_num]
with self.db_output_cache_lock:
self.db_output_cache.append((line_num, output))
if self.db_cache_size <= 1:
self.save_flag.set()
def _writeout_input_cache(self, conn):
with conn:
for line in self.db_input_cache:
conn.execute("INSERT INTO history VALUES (?, ?, ?, ?)",
(self.session_number, ) + line)
def _writeout_output_cache(self, conn):
with conn:
for line in self.db_output_cache:
conn.execute("INSERT INTO output_history VALUES (?, ?, ?)",
(self.session_number, ) + line)
@needs_sqlite
def writeout_cache(self, conn=None):
"""Write any entries in the cache to the database."""
if conn is None:
conn = self.db
with self.db_input_cache_lock:
try:
self._writeout_input_cache(conn)
except sqlite3.IntegrityError:
self.new_session(conn)
print("ERROR! Session/line number was not unique in",
"database. History logging moved to new session",
self.session_number)
try:
# Try writing to the new session. If this fails, don't
# recurse
self._writeout_input_cache(conn)
except sqlite3.IntegrityError:
pass
finally:
self.db_input_cache = []
with self.db_output_cache_lock:
try:
self._writeout_output_cache(conn)
except sqlite3.IntegrityError:
print("!! Session/line number for output was not unique",
"in database. Output will not be stored.")
finally:
self.db_output_cache = []
class MyConfigurable(Configurable):
a = Integer(1, config=True, help="The integer a.")
b = Float(1.0, config=True, help="The integer b.")
c = Unicode('no config')
class IPKernelApp(BaseIPythonApplication, InteractiveShellApp):
name='ipkernel'
aliases = Dict(kernel_aliases)
flags = Dict(kernel_flags)
classes = [Kernel, ZMQInteractiveShell, ProfileDir, Session]
# the kernel class, as an importstring
kernel_class = DottedObjectName('IPython.kernel.zmq.ipkernel.Kernel', config=True,
help="""The Kernel subclass to be used.
This should allow easy re-use of the IPKernelApp entry point
to configure and launch kernels other than IPython's own.
""")
kernel = Any()
poller = Any() # don't restrict this even though current pollers are all Threads
heartbeat = Instance(Heartbeat)
session = Instance('IPython.kernel.zmq.session.Session')
ports = Dict()
# ipkernel doesn't get its own config file
def _config_file_name_default(self):
return 'ipython_config.py'
# inherit config file name from parent:
parent_appname = Unicode(config=True)
def _parent_appname_changed(self, name, old, new):
if self.config_file_specified:
# it was manually specified, ignore
return
self.config_file_name = new.replace('-','_') + u'_config.py'
# don't let this count as specifying the config file
self.config_file_specified.remove(self.config_file_name)
# connection info:
transport = CaselessStrEnum(['tcp', 'ipc'], default_value='tcp', config=True)
ip = Unicode(config=True,
help="Set the IP or interface on which the kernel will listen.")
def _ip_default(self):
if self.transport == 'ipc':
if self.connection_file:
return os.path.splitext(self.abs_connection_file)[0] + '-ipc'
else:
return 'kernel-ipc'
else:
return localhost()
hb_port = Integer(0, config=True, help="set the heartbeat port [default: random]")
shell_port = Integer(0, config=True, help="set the shell (ROUTER) port [default: random]")
iopub_port = Integer(0, config=True, help="set the iopub (PUB) port [default: random]")
stdin_port = Integer(0, config=True, help="set the stdin (ROUTER) port [default: random]")
control_port = Integer(0, config=True, help="set the control (ROUTER) port [default: random]")
connection_file = Unicode('', config=True,
help="""JSON file in which to store connection info [default: kernel-<pid>.json]
This file will contain the IP, ports, and authentication key needed to connect
clients to this kernel. By default, this file will be created in the security dir
of the current profile, but can be specified by absolute path.
""")
@property
def abs_connection_file(self):
if os.path.basename(self.connection_file) == self.connection_file:
return os.path.join(self.profile_dir.security_dir, self.connection_file)
else:
return self.connection_file
# streams, etc.
no_stdout = Bool(False, config=True, help="redirect stdout to the null device")
no_stderr = Bool(False, config=True, help="redirect stderr to the null device")
outstream_class = DottedObjectName('IPython.kernel.zmq.iostream.OutStream',
config=True, help="The importstring for the OutStream factory")
displayhook_class = DottedObjectName('IPython.kernel.zmq.displayhook.ZMQDisplayHook',
config=True, help="The importstring for the DisplayHook factory")
# polling
parent_handle = Integer(0, config=True,
help="""kill this process if its parent dies. On Windows, the argument
specifies the HANDLE of the parent process, otherwise it is simply boolean.
""")
interrupt = Integer(0, config=True,
help="""ONLY USED ON WINDOWS
Interrupt this process when the parent is signaled.
""")
def init_crash_handler(self):
# Install minimal exception handling
sys.excepthook = FormattedTB(mode='Verbose', color_scheme='NoColor',
ostream=sys.__stdout__)
def init_poller(self):
if sys.platform == 'win32':
if self.interrupt or self.parent_handle:
self.poller = ParentPollerWindows(self.interrupt, self.parent_handle)
elif self.parent_handle:
self.poller = ParentPollerUnix()
def _bind_socket(self, s, port):
iface = '%s://%s' % (self.transport, self.ip)
if self.transport == 'tcp':
if port <= 0:
port = s.bind_to_random_port(iface)
else:
s.bind("tcp://%s:%i" % (self.ip, port))
elif self.transport == 'ipc':
if port <= 0:
port = 1
path = "%s-%i" % (self.ip, port)
while os.path.exists(path):
port = port + 1
path = "%s-%i" % (self.ip, port)
else:
path = "%s-%i" % (self.ip, port)
s.bind("ipc://%s" % path)
return port
def load_connection_file(self):
"""load ip/port/hmac config from JSON connection file"""
try:
fname = filefind(self.connection_file, ['.', self.profile_dir.security_dir])
except IOError:
self.log.debug("Connection file not found: %s", self.connection_file)
# This means I own it, so I will clean it up:
atexit.register(self.cleanup_connection_file)
return
self.log.debug(u"Loading connection file %s", fname)
with open(fname) as f:
s = f.read()
cfg = json.loads(s)
self.transport = cfg.get('transport', self.transport)
if self.ip == self._ip_default() and 'ip' in cfg:
# not overridden by config or cl_args
self.ip = cfg['ip']
for channel in ('hb', 'shell', 'iopub', 'stdin', 'control'):
name = channel + '_port'
if getattr(self, name) == 0 and name in cfg:
# not overridden by config or cl_args
setattr(self, name, cfg[name])
if 'key' in cfg:
self.config.Session.key = str_to_bytes(cfg['key'])
def write_connection_file(self):
"""write connection info to JSON file"""
cf = self.abs_connection_file
self.log.debug("Writing connection file: %s", cf)
write_connection_file(cf, ip=self.ip, key=self.session.key, transport=self.transport,
shell_port=self.shell_port, stdin_port=self.stdin_port, hb_port=self.hb_port,
iopub_port=self.iopub_port, control_port=self.control_port)
def cleanup_connection_file(self):
cf = self.abs_connection_file
self.log.debug("Cleaning up connection file: %s", cf)
try:
os.remove(cf)
except (IOError, OSError):
pass
self.cleanup_ipc_files()
def cleanup_ipc_files(self):
"""cleanup ipc files if we wrote them"""
if self.transport != 'ipc':
return
for port in (self.shell_port, self.iopub_port, self.stdin_port, self.hb_port, self.control_port):
ipcfile = "%s-%i" % (self.ip, port)
try:
os.remove(ipcfile)
except (IOError, OSError):
pass
def init_connection_file(self):
if not self.connection_file:
self.connection_file = "kernel-%s.json"%os.getpid()
try:
self.load_connection_file()
except Exception:
self.log.error("Failed to load connection file: %r", self.connection_file, exc_info=True)
self.exit(1)
def init_sockets(self):
# Create a context, a session, and the kernel sockets.
self.log.info("Starting the kernel at pid: %i", os.getpid())
context = zmq.Context.instance()
# Uncomment this to try closing the context.
# atexit.register(context.term)
self.shell_socket = context.socket(zmq.ROUTER)
self.shell_port = self._bind_socket(self.shell_socket, self.shell_port)
self.log.debug("shell ROUTER Channel on port: %i" % self.shell_port)
self.iopub_socket = context.socket(zmq.PUB)
self.iopub_port = self._bind_socket(self.iopub_socket, self.iopub_port)
self.log.debug("iopub PUB Channel on port: %i" % self.iopub_port)
self.stdin_socket = context.socket(zmq.ROUTER)
self.stdin_port = self._bind_socket(self.stdin_socket, self.stdin_port)
self.log.debug("stdin ROUTER Channel on port: %i" % self.stdin_port)
self.control_socket = context.socket(zmq.ROUTER)
self.control_port = self._bind_socket(self.control_socket, self.control_port)
self.log.debug("control ROUTER Channel on port: %i" % self.control_port)
def init_heartbeat(self):
"""start the heart beating"""
# heartbeat doesn't share context, because it mustn't be blocked
# by the GIL, which is accessed by libzmq when freeing zero-copy messages
hb_ctx = zmq.Context()
self.heartbeat = Heartbeat(hb_ctx, (self.transport, self.ip, self.hb_port))
self.hb_port = self.heartbeat.port
self.log.debug("Heartbeat REP Channel on port: %i" % self.hb_port)
self.heartbeat.start()
def log_connection_info(self):
"""display connection info, and store ports"""
basename = os.path.basename(self.connection_file)
if basename == self.connection_file or \
os.path.dirname(self.connection_file) == self.profile_dir.security_dir:
# use shortname
tail = basename
if self.profile != 'default':
tail += " --profile %s" % self.profile
else:
tail = self.connection_file
lines = [
"To connect another client to this kernel, use:",
" --existing %s" % tail,
]
# log connection info
# info-level, so often not shown.
# frontends should use the %connect_info magic
# to see the connection info
for line in lines:
self.log.info(line)
# also raw print to the terminal if no parent_handle (`ipython kernel`)
if not self.parent_handle:
io.rprint(_ctrl_c_message)
for line in lines:
io.rprint(line)
self.ports = dict(shell=self.shell_port, iopub=self.iopub_port,
stdin=self.stdin_port, hb=self.hb_port,
control=self.control_port)
def init_session(self):
"""create our session object"""
default_secure(self.config)
self.session = Session(parent=self, username=u'kernel')
def init_blackhole(self):
"""redirects stdout/stderr to devnull if necessary"""
if self.no_stdout or self.no_stderr:
blackhole = open(os.devnull, 'w')
if self.no_stdout:
sys.stdout = sys.__stdout__ = blackhole
if self.no_stderr:
sys.stderr = sys.__stderr__ = blackhole
def init_io(self):
"""Redirect input streams and set a display hook."""
if self.outstream_class:
outstream_factory = import_item(str(self.outstream_class))
sys.stdout = outstream_factory(self.session, self.iopub_socket, u'stdout')
sys.stderr = outstream_factory(self.session, self.iopub_socket, u'stderr')
if self.displayhook_class:
displayhook_factory = import_item(str(self.displayhook_class))
sys.displayhook = displayhook_factory(self.session, self.iopub_socket)
def init_signal(self):
signal.signal(signal.SIGINT, signal.SIG_IGN)
def init_kernel(self):
"""Create the Kernel object itself"""
shell_stream = ZMQStream(self.shell_socket)
control_stream = ZMQStream(self.control_socket)
kernel_factory = import_item(str(self.kernel_class))
kernel = kernel_factory(parent=self, session=self.session,
shell_streams=[shell_stream, control_stream],
iopub_socket=self.iopub_socket,
stdin_socket=self.stdin_socket,
log=self.log,
profile_dir=self.profile_dir,
user_ns=self.user_ns,
)
kernel.record_ports(self.ports)
self.kernel = kernel
def init_gui_pylab(self):
"""Enable GUI event loop integration, taking pylab into account."""
# Provide a wrapper for :meth:`InteractiveShellApp.init_gui_pylab`
# to ensure that any exception is printed straight to stderr.
# Normally _showtraceback associates the reply with an execution,
# which means frontends will never draw it, as this exception
# is not associated with any execute request.
shell = self.shell
_showtraceback = shell._showtraceback
try:
# replace pyerr-sending traceback with stderr
def print_tb(etype, evalue, stb):
print ("GUI event loop or pylab initialization failed",
file=io.stderr)
print (shell.InteractiveTB.stb2text(stb), file=io.stderr)
shell._showtraceback = print_tb
InteractiveShellApp.init_gui_pylab(self)
finally:
shell._showtraceback = _showtraceback
def init_shell(self):
self.shell = self.kernel.shell
self.shell.configurables.append(self)
@catch_config_error
def initialize(self, argv=None):
super(IPKernelApp, self).initialize(argv)
self.init_blackhole()
self.init_connection_file()
self.init_session()
self.init_poller()
self.init_sockets()
self.init_heartbeat()
# writing/displaying connection info must be *after* init_sockets/heartbeat
self.log_connection_info()
self.write_connection_file()
self.init_io()
self.init_signal()
self.init_kernel()
# shell init steps
self.init_path()
self.init_shell()
self.init_gui_pylab()
self.init_extensions()
self.init_code()
# flush stdout/stderr, so that anything written to these streams during
# initialization do not get associated with the first execution request
sys.stdout.flush()
sys.stderr.flush()
def start(self):
if self.poller is not None:
self.poller.start()
self.kernel.start()
try:
ioloop.IOLoop.instance().start()
except KeyboardInterrupt:
pass
class NotebookNotary(LoggingConfigurable):
"""A class for computing and verifying notebook signatures."""
profile_dir = Instance("IPython.core.profiledir.ProfileDir",
allow_none=True)
def _profile_dir_default(self):
from IPython.core.application import BaseIPythonApplication
app = None
try:
if BaseIPythonApplication.initialized():
app = BaseIPythonApplication.instance()
except MultipleInstanceError:
pass
if app is None:
# create an app, without the global instance
app = BaseIPythonApplication()
app.initialize(argv=[])
return app.profile_dir
db_file = Unicode(
config=True,
help="""The sqlite file in which to store notebook signatures.
By default, this will be in your IPython profile.
You can set it to ':memory:' to disable sqlite writing to the filesystem.
""")
def _db_file_default(self):
if self.profile_dir is None:
return ':memory:'
return os.path.join(self.profile_dir.security_dir, u'nbsignatures.db')
# 64k entries ~ 12MB
cache_size = Integer(65535,
config=True,
help="""The number of notebook signatures to cache.
When the number of signatures exceeds this value,
the oldest 25% of signatures will be culled.
""")
db = Any()
def _db_default(self):
if sqlite3 is None:
self.log.warn("Missing SQLite3, all notebooks will be untrusted!")
return
kwargs = dict(detect_types=sqlite3.PARSE_DECLTYPES
| sqlite3.PARSE_COLNAMES)
db = sqlite3.connect(self.db_file, **kwargs)
self.init_db(db)
return db
def init_db(self, db):
db.execute("""
CREATE TABLE IF NOT EXISTS nbsignatures
(
id integer PRIMARY KEY AUTOINCREMENT,
algorithm text,
signature text,
path text,
last_seen timestamp
)""")
db.execute("""
CREATE INDEX IF NOT EXISTS algosig ON nbsignatures(algorithm, signature)
""")
db.commit()
algorithm = Enum(algorithms,
default_value='sha256',
config=True,
help="""The hashing algorithm used to sign notebooks.""")
def _algorithm_changed(self, name, old, new):
self.digestmod = getattr(hashlib, self.algorithm)
digestmod = Any()
def _digestmod_default(self):
return getattr(hashlib, self.algorithm)
secret_file = Unicode(config=True,
help="""The file where the secret key is stored.""")
def _secret_file_default(self):
if self.profile_dir is None:
return ''
return os.path.join(self.profile_dir.security_dir, 'notebook_secret')
secret = Bytes(config=True,
help="""The secret key with which notebooks are signed.""")
def _secret_default(self):
# note : this assumes an Application is running
if os.path.exists(self.secret_file):
with io.open(self.secret_file, 'rb') as f:
return f.read()
else:
secret = base64.encodestring(os.urandom(1024))
self._write_secret_file(secret)
return secret
def _write_secret_file(self, secret):
"""write my secret to my secret_file"""
self.log.info("Writing notebook-signing key to %s", self.secret_file)
with io.open(self.secret_file, 'wb') as f:
f.write(secret)
try:
os.chmod(self.secret_file, 0o600)
except OSError:
self.log.warn("Could not set permissions on %s", self.secret_file)
return secret
def compute_signature(self, nb):
"""Compute a notebook's signature
by hashing the entire contents of the notebook via HMAC digest.
"""
hmac = HMAC(self.secret, digestmod=self.digestmod)
# don't include the previous hash in the content to hash
with signature_removed(nb):
# sign the whole thing
for b in yield_everything(nb):
hmac.update(b)
return hmac.hexdigest()
def check_signature(self, nb):
"""Check a notebook's stored signature
If a signature is stored in the notebook's metadata,
a new signature is computed and compared with the stored value.
Returns True if the signature is found and matches, False otherwise.
The following conditions must all be met for a notebook to be trusted:
- a signature is stored in the form 'scheme:hexdigest'
- the stored scheme matches the requested scheme
- the requested scheme is available from hashlib
- the computed hash from notebook_signature matches the stored hash
"""
if nb.nbformat < 3:
return False
if self.db is None:
return False
signature = self.compute_signature(nb)
r = self.db.execute(
"""SELECT id FROM nbsignatures WHERE
algorithm = ? AND
signature = ?;
""", (self.algorithm, signature)).fetchone()
if r is None:
return False
self.db.execute(
"""UPDATE nbsignatures SET last_seen = ? WHERE
algorithm = ? AND
signature = ?;
""",
(datetime.utcnow(), self.algorithm, signature),
)
self.db.commit()
return True
def sign(self, nb):
"""Sign a notebook, indicating that its output is trusted on this machine
Stores hash algorithm and hmac digest in a local database of trusted notebooks.
"""
if nb.nbformat < 3:
return
signature = self.compute_signature(nb)
self.store_signature(signature, nb)
def store_signature(self, signature, nb):
if self.db is None:
return
self.db.execute(
"""INSERT OR IGNORE INTO nbsignatures
(algorithm, signature, last_seen) VALUES (?, ?, ?)""",
(self.algorithm, signature, datetime.utcnow()))
self.db.execute(
"""UPDATE nbsignatures SET last_seen = ? WHERE
algorithm = ? AND
signature = ?;
""",
(datetime.utcnow(), self.algorithm, signature),
)
self.db.commit()
n, = self.db.execute("SELECT Count(*) FROM nbsignatures").fetchone()
if n > self.cache_size:
self.cull_db()
def unsign(self, nb):
"""Ensure that a notebook is untrusted
by removing its signature from the trusted database, if present.
"""
signature = self.compute_signature(nb)
self.db.execute(
"""DELETE FROM nbsignatures WHERE
algorithm = ? AND
signature = ?;
""", (self.algorithm, signature))
self.db.commit()
def cull_db(self):
"""Cull oldest 25% of the trusted signatures when the size limit is reached"""
self.db.execute(
"""DELETE FROM nbsignatures WHERE id IN (
SELECT id FROM nbsignatures ORDER BY last_seen DESC LIMIT -1 OFFSET ?
);
""", (max(int(0.75 * self.cache_size), 1), ))
def mark_cells(self, nb, trusted):
"""Mark cells as trusted if the notebook's signature can be verified
Sets ``cell.metadata.trusted = True | False`` on all code cells,
depending on whether the stored signature can be verified.
This function is the inverse of check_cells
"""
if nb.nbformat < 3:
return
for cell in yield_code_cells(nb):
cell['metadata']['trusted'] = trusted
def _check_cell(self, cell, nbformat_version):
"""Do we trust an individual cell?
Return True if:
- cell is explicitly trusted
- cell has no potentially unsafe rich output
If a cell has no output, or only simple print statements,
it will always be trusted.
"""
# explicitly trusted
if cell['metadata'].pop("trusted", False):
return True
# explicitly safe output
if nbformat_version >= 4:
unsafe_output_types = ['execute_result', 'display_data']
safe_keys = {"output_type", "execution_count", "metadata"}
else: # v3
unsafe_output_types = ['pyout', 'display_data']
safe_keys = {"output_type", "prompt_number", "metadata"}
for output in cell['outputs']:
output_type = output['output_type']
if output_type in unsafe_output_types:
# if there are any data keys not in the safe whitelist
output_keys = set(output)
if output_keys.difference(safe_keys):
return False
return True
def check_cells(self, nb):
"""Return whether all code cells are trusted
If there are no code cells, return True.
This function is the inverse of mark_cells.
"""
if nb.nbformat < 3:
return False
trusted = True
for cell in yield_code_cells(nb):
# only distrust a cell if it actually has some output to distrust
if not self._check_cell(cell, nb.nbformat):
trusted = False
return trusted
class ExecutePreprocessor(Preprocessor):
"""
Executes all the cells in a notebook
"""
timeout = Integer(30, config=True,
help="The time to wait (in seconds) for output from executions."
)
interrupt_on_timeout = Bool(
False, config=True,
help=dedent(
"""
If execution of a cell times out, interrupt the kernel and
continue executing other cells rather than throwing an error and
stopping.
"""
)
)
extra_arguments = List(Unicode)
def preprocess(self, nb, resources):
path = resources.get('metadata', {}).get('path', '')
if path == '':
path = None
from IPython.kernel.manager import start_new_kernel
kernel_name = nb.metadata.get('kernelspec', {}).get('name', 'python')
self.log.info("Executing notebook with kernel: %s" % kernel_name)
self.km, self.kc = start_new_kernel(
kernel_name=kernel_name,
extra_arguments=self.extra_arguments,
stderr=open(os.devnull, 'w'),
cwd=path)
self.kc.allow_stdin = False
try:
nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources)
finally:
self.kc.stop_channels()
self.km.shutdown_kernel(now=True)
return nb, resources
def preprocess_cell(self, cell, resources, cell_index):
"""
Apply a transformation on each code cell. See base.py for details.
"""
if cell.cell_type != 'code':
return cell, resources
try:
outputs = self.run_cell(cell)
except Exception as e:
self.log.error("failed to run cell: " + repr(e))
self.log.error(str(cell.source))
raise
cell.outputs = outputs
return cell, resources
def run_cell(self, cell):
msg_id = self.kc.execute(cell.source)
self.log.debug("Executing cell:\n%s", cell.source)
# wait for finish, with timeout
while True:
try:
msg = self.kc.shell_channel.get_msg(timeout=self.timeout)
except Empty:
self.log.error("Timeout waiting for execute reply")
if self.interrupt_on_timeout:
self.log.error("Interrupting kernel")
self.km.interrupt_kernel()
break
else:
raise
if msg['parent_header'].get('msg_id') == msg_id:
break
else:
# not our reply
continue
outs = []
while True:
try:
msg = self.kc.iopub_channel.get_msg(timeout=self.timeout)
except Empty:
self.log.warn("Timeout waiting for IOPub output")
break
if msg['parent_header'].get('msg_id') != msg_id:
# not an output from our execution
continue
msg_type = msg['msg_type']
self.log.debug("output: %s", msg_type)
content = msg['content']
# set the prompt number for the input and the output
if 'execution_count' in content:
cell['execution_count'] = content['execution_count']
if msg_type == 'status':
if content['execution_state'] == 'idle':
break
else:
continue
elif msg_type == 'execute_input':
continue
elif msg_type == 'clear_output':
outs = []
continue
elif msg_type.startswith('comm'):
continue
try:
out = output_from_msg(msg)
except ValueError:
self.log.error("unhandled iopub msg: " + msg_type)
else:
outs.append(out)
return outs
class ExecutePreprocessor(Preprocessor):
"""
Executes all the cells in a notebook
"""
timeout = Integer(
30,
config=True,
help="The time to wait (in seconds) for output from executions.")
extra_arguments = List(Unicode)
def preprocess(self, nb, resources):
from IPython.kernel import run_kernel
kernel_name = nb.metadata.get('kernelspec', {}).get('name', 'python')
self.log.info("Executing notebook with kernel: %s" % kernel_name)
with run_kernel(kernel_name=kernel_name,
extra_arguments=self.extra_arguments,
stderr=open(os.devnull, 'w')) as kc:
self.kc = kc
self.kc.allow_stdin = False
nb, resources = super(ExecutePreprocessor,
self).preprocess(nb, resources)
return nb, resources
def preprocess_cell(self, cell, resources, cell_index):
"""
Apply a transformation on each code cell. See base.py for details.
"""
if cell.cell_type != 'code':
return cell, resources
try:
outputs = self.run_cell(cell)
except Exception as e:
self.log.error("failed to run cell: " + repr(e))
self.log.error(str(cell.source))
raise
cell.outputs = outputs
return cell, resources
def run_cell(self, cell):
msg_id = self.kc.execute(cell.source)
self.log.debug("Executing cell:\n%s", cell.source)
# wait for finish, with timeout
while True:
try:
msg = self.kc.shell_channel.get_msg(timeout=self.timeout)
except Empty:
self.log.error("Timeout waiting for execute reply")
raise
if msg['parent_header'].get('msg_id') == msg_id:
break
else:
# not our reply
continue
outs = []
while True:
try:
msg = self.kc.iopub_channel.get_msg(timeout=self.timeout)
except Empty:
self.log.warn("Timeout waiting for IOPub output")
break
if msg['parent_header'].get('msg_id') != msg_id:
# not an output from our execution
continue
msg_type = msg['msg_type']
self.log.debug("output: %s", msg_type)
content = msg['content']
# set the prompt number for the input and the output
if 'execution_count' in content:
cell['execution_count'] = content['execution_count']
if msg_type == 'status':
if content['execution_state'] == 'idle':
break
else:
continue
elif msg_type == 'execute_input':
continue
elif msg_type == 'clear_output':
outs = []
continue
try:
out = output_from_msg(msg)
except ValueError:
self.log.error("unhandled iopub msg: " + msg_type)
else:
outs.append(out)
return outs
class HeartMonitor(LoggingConfigurable):
"""A basic HeartMonitor class
pingstream: a PUB stream
pongstream: an ROUTER stream
period: the period of the heartbeat in milliseconds"""
debug = Bool(
False,
config=True,
help="""Whether to include every heartbeat in debugging output.
Has to be set explicitly, because there will be *a lot* of output.
""")
period = Integer(
3000,
config=True,
help='The frequency at which the Hub pings the engines for heartbeats '
'(in ms)',
)
max_heartmonitor_misses = Integer(
10,
config=True,
help=
'Allowed consecutive missed pings from controller Hub to engine before unregistering.',
)
pingstream = Instance('zmq.eventloop.zmqstream.ZMQStream')
pongstream = Instance('zmq.eventloop.zmqstream.ZMQStream')
loop = Instance('zmq.eventloop.ioloop.IOLoop')
def _loop_default(self):
return ioloop.IOLoop.instance()
# not settable:
hearts = Set()
responses = Set()
on_probation = Dict()
last_ping = CFloat(0)
_new_handlers = Set()
_failure_handlers = Set()
lifetime = CFloat(0)
tic = CFloat(0)
def __init__(self, **kwargs):
super(HeartMonitor, self).__init__(**kwargs)
self.pongstream.on_recv(self.handle_pong)
def start(self):
self.tic = time.time()
self.caller = ioloop.PeriodicCallback(self.beat, self.period,
self.loop)
self.caller.start()
def add_new_heart_handler(self, handler):
"""add a new handler for new hearts"""
self.log.debug("heartbeat::new_heart_handler: %s", handler)
self._new_handlers.add(handler)
def add_heart_failure_handler(self, handler):
"""add a new handler for heart failure"""
self.log.debug("heartbeat::new heart failure handler: %s", handler)
self._failure_handlers.add(handler)
def beat(self):
self.pongstream.flush()
self.last_ping = self.lifetime
toc = time.time()
self.lifetime += toc - self.tic
self.tic = toc
if self.debug:
self.log.debug("heartbeat::sending %s", self.lifetime)
goodhearts = self.hearts.intersection(self.responses)
missed_beats = self.hearts.difference(goodhearts)
newhearts = self.responses.difference(goodhearts)
for heart in newhearts:
self.handle_new_heart(heart)
heartfailures, on_probation = self._check_missed(
missed_beats, self.on_probation, self.hearts)
for failure in heartfailures:
self.handle_heart_failure(failure)
self.on_probation = on_probation
self.responses = set()
#print self.on_probation, self.hearts
# self.log.debug("heartbeat::beat %.3f, %i beating hearts", self.lifetime, len(self.hearts))
self.pingstream.send(str_to_bytes(str(self.lifetime)))
# flush stream to force immediate socket send
self.pingstream.flush()
def _check_missed(self, missed_beats, on_probation, hearts):
"""Update heartbeats on probation, identifying any that have too many misses.
"""
failures = []
new_probation = {}
for cur_heart in (b for b in missed_beats if b in hearts):
miss_count = on_probation.get(cur_heart, 0) + 1
self.log.info("heartbeat::missed %s : %s" %
(cur_heart, miss_count))
if miss_count > self.max_heartmonitor_misses:
failures.append(cur_heart)
else:
new_probation[cur_heart] = miss_count
return failures, new_probation
def handle_new_heart(self, heart):
if self._new_handlers:
for handler in self._new_handlers:
handler(heart)
else:
self.log.info("heartbeat::yay, got new heart %s!", heart)
self.hearts.add(heart)
def handle_heart_failure(self, heart):
if self._failure_handlers:
for handler in self._failure_handlers:
try:
handler(heart)
except Exception as e:
self.log.error("heartbeat::Bad Handler! %s",
handler,
exc_info=True)
pass
else:
self.log.info("heartbeat::Heart %s failed :(", heart)
self.hearts.remove(heart)
@log_errors
def handle_pong(self, msg):
"a heart just beat"
current = str_to_bytes(str(self.lifetime))
last = str_to_bytes(str(self.last_ping))
if msg[1] == current:
delta = time.time() - self.tic
if self.debug:
self.log.debug("heartbeat::heart %r took %.2f ms to respond",
msg[0], 1000 * delta)
self.responses.add(msg[0])
elif msg[1] == last:
delta = time.time() - self.tic + (self.lifetime - self.last_ping)
self.log.warn(
"heartbeat::heart %r missed a beat, and took %.2f ms to respond",
msg[0], 1000 * delta)
self.responses.add(msg[0])
else:
self.log.warn(
"heartbeat::got bad heartbeat (possibly old?): %s (current=%.3f)",
msg[1], self.lifetime)
class EngineFactory(RegistrationFactory):
"""IPython engine"""
# configurables:
out_stream_factory = Type('IPython.kernel.zmq.iostream.OutStream',
config=True,
help="""The OutStream for handling stdout/err.
Typically 'IPython.kernel.zmq.iostream.OutStream'""")
display_hook_factory = Type(
'IPython.kernel.zmq.displayhook.ZMQDisplayHook',
config=True,
help="""The class for handling displayhook.
Typically 'IPython.kernel.zmq.displayhook.ZMQDisplayHook'""")
location = Unicode(
config=True,
help="""The location (an IP address) of the controller. This is
used for disambiguating URLs, to determine whether
loopback should be used to connect or the public address.""")
timeout = Float(
5.0,
config=True,
help="""The time (in seconds) to wait for the Controller to respond
to registration requests before giving up.""")
max_heartbeat_misses = Integer(
50,
config=True,
help="""The maximum number of times a check for the heartbeat ping of a
controller can be missed before shutting down the engine.
If set to 0, the check is disabled.""")
sshserver = Unicode(
config=True,
help=
"""The SSH server to use for tunneling connections to the Controller."""
)
sshkey = Unicode(
config=True,
help=
"""The SSH private key file to use when tunneling connections to the Controller."""
)
paramiko = Bool(
sys.platform == 'win32',
config=True,
help="""Whether to use paramiko instead of openssh for tunnels.""")
@property
def tunnel_mod(self):
from zmq.ssh import tunnel
return tunnel
# not configurable:
connection_info = Dict()
user_ns = Dict()
id = Integer(allow_none=True)
registrar = Instance('zmq.eventloop.zmqstream.ZMQStream')
kernel = Instance(Kernel)
hb_check_period = Integer()
# States for the heartbeat monitoring
# Initial values for monitored and pinged must satisfy "monitored > pinged == False" so that
# during the first check no "missed" ping is reported. Must be floats for Python 3 compatibility.
_hb_last_pinged = 0.0
_hb_last_monitored = 0.0
_hb_missed_beats = 0
# The zmq Stream which receives the pings from the Heart
_hb_listener = None
bident = CBytes()
ident = Unicode()
def _ident_changed(self, name, old, new):
self.bident = cast_bytes(new)
using_ssh = Bool(False)
def __init__(self, **kwargs):
super(EngineFactory, self).__init__(**kwargs)
self.ident = self.session.session
def init_connector(self):
"""construct connection function, which handles tunnels."""
self.using_ssh = bool(self.sshkey or self.sshserver)
if self.sshkey and not self.sshserver:
# We are using ssh directly to the controller, tunneling localhost to localhost
self.sshserver = self.url.split('://')[1].split(':')[0]
if self.using_ssh:
if self.tunnel_mod.try_passwordless_ssh(self.sshserver,
self.sshkey,
self.paramiko):
password = False
else:
password = getpass("SSH Password for %s: " % self.sshserver)
else:
password = False
def connect(s, url):
url = disambiguate_url(url, self.location)
if self.using_ssh:
self.log.debug("Tunneling connection to %s via %s", url,
self.sshserver)
return self.tunnel_mod.tunnel_connection(
s,
url,
self.sshserver,
keyfile=self.sshkey,
paramiko=self.paramiko,
password=password,
)
else:
return s.connect(url)
def maybe_tunnel(url):
"""like connect, but don't complete the connection (for use by heartbeat)"""
url = disambiguate_url(url, self.location)
if self.using_ssh:
self.log.debug("Tunneling connection to %s via %s", url,
self.sshserver)
url, tunnelobj = self.tunnel_mod.open_tunnel(
url,
self.sshserver,
keyfile=self.sshkey,
paramiko=self.paramiko,
password=password,
)
return str(url)
return connect, maybe_tunnel
def register(self):
"""send the registration_request"""
self.log.info("Registering with controller at %s" % self.url)
ctx = self.context
connect, maybe_tunnel = self.init_connector()
reg = ctx.socket(zmq.DEALER)
reg.setsockopt(zmq.IDENTITY, self.bident)
connect(reg, self.url)
self.registrar = zmqstream.ZMQStream(reg, self.loop)
content = dict(uuid=self.ident)
self.registrar.on_recv(
lambda msg: self.complete_registration(msg, connect, maybe_tunnel))
# print (self.session.key)
self.session.send(self.registrar,
"registration_request",
content=content)
def _report_ping(self, msg):
"""Callback for when the heartmonitor.Heart receives a ping"""
#self.log.debug("Received a ping: %s", msg)
self._hb_last_pinged = time.time()
def complete_registration(self, msg, connect, maybe_tunnel):
# print msg
self._abort_dc.stop()
ctx = self.context
loop = self.loop
identity = self.bident
idents, msg = self.session.feed_identities(msg)
msg = self.session.unserialize(msg)
content = msg['content']
info = self.connection_info
def url(key):
"""get zmq url for given channel"""
return str(info["interface"] + ":%i" % info[key])
if content['status'] == 'ok':
self.id = int(content['id'])
# launch heartbeat
# possibly forward hb ports with tunnels
hb_ping = maybe_tunnel(url('hb_ping'))
hb_pong = maybe_tunnel(url('hb_pong'))
hb_monitor = None
if self.max_heartbeat_misses > 0:
# Add a monitor socket which will record the last time a ping was seen
mon = self.context.socket(zmq.SUB)
mport = mon.bind_to_random_port('tcp://%s' % localhost())
mon.setsockopt(zmq.SUBSCRIBE, b"")
self._hb_listener = zmqstream.ZMQStream(mon, self.loop)
self._hb_listener.on_recv(self._report_ping)
hb_monitor = "tcp://%s:%i" % (localhost(), mport)
heart = Heart(hb_ping, hb_pong, hb_monitor, heart_id=identity)
heart.start()
# create Shell Connections (MUX, Task, etc.):
shell_addrs = url('mux'), url('task')
# Use only one shell stream for mux and tasks
stream = zmqstream.ZMQStream(ctx.socket(zmq.ROUTER), loop)
stream.setsockopt(zmq.IDENTITY, identity)
shell_streams = [stream]
for addr in shell_addrs:
connect(stream, addr)
# control stream:
control_addr = url('control')
control_stream = zmqstream.ZMQStream(ctx.socket(zmq.ROUTER), loop)
control_stream.setsockopt(zmq.IDENTITY, identity)
connect(control_stream, control_addr)
# create iopub stream:
iopub_addr = url('iopub')
iopub_socket = ctx.socket(zmq.PUB)
iopub_socket.setsockopt(zmq.IDENTITY, identity)
connect(iopub_socket, iopub_addr)
# disable history:
self.config.HistoryManager.hist_file = ':memory:'
# Redirect input streams and set a display hook.
if self.out_stream_factory:
sys.stdout = self.out_stream_factory(self.session,
iopub_socket, u'stdout')
sys.stdout.topic = cast_bytes('engine.%i.stdout' % self.id)
sys.stderr = self.out_stream_factory(self.session,
iopub_socket, u'stderr')
sys.stderr.topic = cast_bytes('engine.%i.stderr' % self.id)
if self.display_hook_factory:
sys.displayhook = self.display_hook_factory(
self.session, iopub_socket)
sys.displayhook.topic = cast_bytes('engine.%i.execute_result' %
self.id)
self.kernel = Kernel(parent=self,
int_id=self.id,
ident=self.ident,
session=self.session,
control_stream=control_stream,
shell_streams=shell_streams,
iopub_socket=iopub_socket,
loop=loop,
user_ns=self.user_ns,
log=self.log)
self.kernel.shell.display_pub.topic = cast_bytes(
'engine.%i.displaypub' % self.id)
# periodically check the heartbeat pings of the controller
# Should be started here and not in "start()" so that the right period can be taken
# from the hubs HeartBeatMonitor.period
if self.max_heartbeat_misses > 0:
# Use a slightly bigger check period than the hub signal period to not warn unnecessary
self.hb_check_period = int(content['hb_period']) + 10
self.log.info(
"Starting to monitor the heartbeat signal from the hub every %i ms.",
self.hb_check_period)
self._hb_reporter = ioloop.PeriodicCallback(
self._hb_monitor, self.hb_check_period, self.loop)
self._hb_reporter.start()
else:
self.log.info(
"Monitoring of the heartbeat signal from the hub is not enabled."
)
# FIXME: This is a hack until IPKernelApp and IPEngineApp can be fully merged
app = IPKernelApp(parent=self,
shell=self.kernel.shell,
kernel=self.kernel,
log=self.log)
app.init_profile_dir()
app.init_code()
self.kernel.start()
else:
self.log.fatal("Registration Failed: %s" % msg)
raise Exception("Registration Failed: %s" % msg)
self.log.info("Completed registration with id %i" % self.id)
def abort(self):
self.log.fatal("Registration timed out after %.1f seconds" %
self.timeout)
if self.url.startswith('127.'):
self.log.fatal("""
If the controller and engines are not on the same machine,
you will have to instruct the controller to listen on an external IP (in ipcontroller_config.py):
c.HubFactory.ip='*' # for all interfaces, internal and external
c.HubFactory.ip='192.168.1.101' # or any interface that the engines can see
or tunnel connections via ssh.
""")
self.session.send(self.registrar,
"unregistration_request",
content=dict(id=self.id))
time.sleep(1)
sys.exit(255)
def _hb_monitor(self):
"""Callback to monitor the heartbeat from the controller"""
self._hb_listener.flush()
if self._hb_last_monitored > self._hb_last_pinged:
self._hb_missed_beats += 1
self.log.warn(
"No heartbeat in the last %s ms (%s time(s) in a row).",
self.hb_check_period, self._hb_missed_beats)
else:
#self.log.debug("Heartbeat received (after missing %s beats).", self._hb_missed_beats)
self._hb_missed_beats = 0
if self._hb_missed_beats >= self.max_heartbeat_misses:
self.log.fatal(
"Maximum number of heartbeats misses reached (%s times %s ms), shutting down.",
self.max_heartbeat_misses, self.hb_check_period)
self.session.send(self.registrar,
"unregistration_request",
content=dict(id=self.id))
self.loop.stop()
self._hb_last_monitored = time.time()
def start(self):
dc = ioloop.DelayedCallback(self.register, 0, self.loop)
dc.start()
self._abort_dc = ioloop.DelayedCallback(self.abort,
self.timeout * 1000, self.loop)
self._abort_dc.start()
class BatchSystemLauncher(BaseLauncher):
"""Launch an external process using a batch system.
This class is designed to work with UNIX batch systems like PBS, LSF,
GridEngine, etc. The overall model is that there are different commands
like qsub, qdel, etc. that handle the starting and stopping of the process.
This class also has the notion of a batch script. The ``batch_template``
attribute can be set to a string that is a template for the batch script.
This template is instantiated using string formatting. Thus the template can
use {n} fot the number of instances. Subclasses can add additional variables
to the template dict.
"""
# Subclasses must fill these in. See PBSEngineSet
submit_command = List(
[''],
config=True,
help="The name of the command line program used to submit jobs.")
delete_command = List(
[''],
config=True,
help="The name of the command line program used to delete jobs.")
job_id_regexp = CRegExp(
'',
config=True,
help=
"""A regular expression used to get the job id from the output of the
submit_command.""")
batch_template = Unicode(
'',
config=True,
help="The string that is the batch script template itself.")
batch_template_file = Unicode(
u'', config=True, help="The file that contains the batch template.")
batch_file_name = Unicode(
u'batch_script',
config=True,
help="The filename of the instantiated batch script.")
queue = Unicode(u'', config=True, help="The PBS Queue.")
def _queue_changed(self, name, old, new):
self.context[name] = new
n = Integer(1)
_n_changed = _queue_changed
# not configurable, override in subclasses
# PBS Job Array regex
job_array_regexp = CRegExp('')
job_array_template = Unicode('')
# PBS Queue regex
queue_regexp = CRegExp('')
queue_template = Unicode('')
# The default batch template, override in subclasses
default_template = Unicode('')
# The full path to the instantiated batch script.
batch_file = Unicode(u'')
# the format dict used with batch_template:
context = Dict()
def _context_default(self):
"""load the default context with the default values for the basic keys
because the _trait_changed methods only load the context if they
are set to something other than the default value.
"""
return dict(n=1, queue=u'', profile_dir=u'', cluster_id=u'')
# the Formatter instance for rendering the templates:
formatter = Instance(EvalFormatter, (), {})
def find_args(self):
return self.submit_command + [self.batch_file]
def __init__(self, work_dir=u'.', config=None, **kwargs):
super(BatchSystemLauncher, self).__init__(work_dir=work_dir,
config=config,
**kwargs)
self.batch_file = os.path.join(self.work_dir, self.batch_file_name)
def parse_job_id(self, output):
"""Take the output of the submit command and return the job id."""
m = self.job_id_regexp.search(output)
if m is not None:
job_id = m.group()
else:
raise LauncherError("Job id couldn't be determined: %s" % output)
self.job_id = job_id
self.log.info('Job submitted with job id: %r', job_id)
return job_id
def write_batch_script(self, n):
"""Instantiate and write the batch script to the work_dir."""
self.n = n
# first priority is batch_template if set
if self.batch_template_file and not self.batch_template:
# second priority is batch_template_file
with open(self.batch_template_file) as f:
self.batch_template = f.read()
if not self.batch_template:
# third (last) priority is default_template
self.batch_template = self.default_template
# add jobarray or queue lines to user-specified template
# note that this is *only* when user did not specify a template.
# print self.job_array_regexp.search(self.batch_template)
if not self.job_array_regexp.search(self.batch_template):
self.log.debug("adding job array settings to batch script")
firstline, rest = self.batch_template.split('\n', 1)
self.batch_template = u'\n'.join(
[firstline, self.job_array_template, rest])
# print self.queue_regexp.search(self.batch_template)
if self.queue and not self.queue_regexp.search(
self.batch_template):
self.log.debug("adding PBS queue settings to batch script")
firstline, rest = self.batch_template.split('\n', 1)
self.batch_template = u'\n'.join(
[firstline, self.queue_template, rest])
script_as_string = self.formatter.format(self.batch_template,
**self.context)
self.log.debug('Writing batch script: %s', self.batch_file)
with open(self.batch_file, 'w') as f:
f.write(script_as_string)
os.chmod(self.batch_file, stat.S_IRUSR | stat.S_IWUSR | stat.S_IXUSR)
def start(self, n):
"""Start n copies of the process using a batch system."""
self.log.debug("Starting %s: %r", self.__class__.__name__, self.args)
# Here we save profile_dir in the context so they
# can be used in the batch script template as {profile_dir}
self.write_batch_script(n)
output = check_output(self.args, env=os.environ)
job_id = self.parse_job_id(output)
self.notify_start(job_id)
return job_id
def stop(self):
output = check_output(self.delete_command + [self.job_id],
env=os.environ)
self.notify_stop(
dict(job_id=self.job_id,
output=output)) # Pass the output of the kill cmd
return output
class LocalProcessLauncher(BaseLauncher):
"""Start and stop an external process in an asynchronous manner.
This will launch the external process with a working directory of
``self.work_dir``.
"""
# This is used to to construct self.args, which is passed to
# spawnProcess.
cmd_and_args = List([])
poll_frequency = Integer(100) # in ms
def __init__(self, work_dir=u'.', config=None, **kwargs):
super(LocalProcessLauncher, self).__init__(work_dir=work_dir,
config=config,
**kwargs)
self.process = None
self.poller = None
def find_args(self):
return self.cmd_and_args
def start(self):
self.log.debug("Starting %s: %r", self.__class__.__name__, self.args)
if self.state == 'before':
self.process = Popen(self.args,
stdout=PIPE,
stderr=PIPE,
stdin=PIPE,
env=os.environ,
cwd=self.work_dir)
if WINDOWS:
self.stdout = forward_read_events(self.process.stdout)
self.stderr = forward_read_events(self.process.stderr)
else:
self.stdout = self.process.stdout.fileno()
self.stderr = self.process.stderr.fileno()
self.loop.add_handler(self.stdout, self.handle_stdout,
self.loop.READ)
self.loop.add_handler(self.stderr, self.handle_stderr,
self.loop.READ)
self.poller = ioloop.PeriodicCallback(self.poll,
self.poll_frequency,
self.loop)
self.poller.start()
self.notify_start(self.process.pid)
else:
s = 'The process was already started and has state: %r' % self.state
raise ProcessStateError(s)
def stop(self):
return self.interrupt_then_kill()
def signal(self, sig):
if self.state == 'running':
if WINDOWS and sig != SIGINT:
# use Windows tree-kill for better child cleanup
check_output(
['taskkill', '-pid',
str(self.process.pid), '-t', '-f'])
else:
self.process.send_signal(sig)
def interrupt_then_kill(self, delay=2.0):
"""Send INT, wait a delay and then send KILL."""
try:
self.signal(SIGINT)
except Exception:
self.log.debug("interrupt failed")
pass
self.killer = ioloop.DelayedCallback(lambda: self.signal(SIGKILL),
delay * 1000, self.loop)
self.killer.start()
# callbacks, etc:
def handle_stdout(self, fd, events):
if WINDOWS:
line = self.stdout.recv()
else:
line = self.process.stdout.readline()
# a stopped process will be readable but return empty strings
if line:
self.log.debug(line[:-1])
else:
self.poll()
def handle_stderr(self, fd, events):
if WINDOWS:
line = self.stderr.recv()
else:
line = self.process.stderr.readline()
# a stopped process will be readable but return empty strings
if line:
self.log.debug(line[:-1])
else:
self.poll()
def poll(self):
status = self.process.poll()
if status is not None:
self.poller.stop()
self.loop.remove_handler(self.stdout)
self.loop.remove_handler(self.stderr)
self.notify_stop(dict(exit_code=status, pid=self.process.pid))
return status
class DictDB(BaseDB):
"""Basic in-memory dict-based object for saving Task Records.
This is the first object to present the DB interface
for logging tasks out of memory.
The interface is based on MongoDB, so adding a MongoDB
backend should be straightforward.
"""
_records = Dict()
_culled_ids = set() # set of ids which have been culled
_buffer_bytes = Integer(0) # running total of the bytes in the DB
size_limit = Integer(
1024**3,
config=True,
help="""The maximum total size (in bytes) of the buffers stored in the db
When the db exceeds this size, the oldest records will be culled until
the total size is under size_limit * (1-cull_fraction).
default: 1 GB
""")
record_limit = Integer(1024,
config=True,
help="""The maximum number of records in the db
When the history exceeds this size, the first record_limit * cull_fraction
records will be culled.
""")
cull_fraction = Float(
0.1,
config=True,
help=
"""The fraction by which the db should culled when one of the limits is exceeded
In general, the db size will spend most of its time with a size in the range:
[limit * (1-cull_fraction), limit]
for each of size_limit and record_limit.
""")
def _match_one(self, rec, tests):
"""Check if a specific record matches tests."""
for key, test in tests.items():
if not test(rec.get(key, None)):
return False
return True
def _match(self, check):
"""Find all the matches for a check dict."""
matches = []
tests = {}
for k, v in check.items():
if isinstance(v, dict):
tests[k] = CompositeFilter(v)
else:
tests[k] = lambda o: o == v
for rec in self._records.values():
if self._match_one(rec, tests):
matches.append(copy(rec))
return matches
def _extract_subdict(self, rec, keys):
"""extract subdict of keys"""
d = {}
d['msg_id'] = rec['msg_id']
for key in keys:
d[key] = rec[key]
return copy(d)
# methods for monitoring size / culling history
def _add_bytes(self, rec):
for key in ('buffers', 'result_buffers'):
for buf in rec.get(key) or []:
self._buffer_bytes += len(buf)
self._maybe_cull()
def _drop_bytes(self, rec):
for key in ('buffers', 'result_buffers'):
for buf in rec.get(key) or []:
self._buffer_bytes -= len(buf)
def _cull_oldest(self, n=1):
"""cull the oldest N records"""
for msg_id in self.get_history()[:n]:
self.log.debug("Culling record: %r", msg_id)
self._culled_ids.add(msg_id)
self.drop_record(msg_id)
def _maybe_cull(self):
# cull by count:
if len(self._records) > self.record_limit:
to_cull = int(self.cull_fraction * self.record_limit)
self.log.info("%i records exceeds limit of %i, culling oldest %i",
len(self._records), self.record_limit, to_cull)
self._cull_oldest(to_cull)
# cull by size:
if self._buffer_bytes > self.size_limit:
limit = self.size_limit * (1 - self.cull_fraction)
before = self._buffer_bytes
before_count = len(self._records)
culled = 0
while self._buffer_bytes > limit:
self._cull_oldest(1)
culled += 1
self.log.info(
"%i records with total buffer size %i exceeds limit: %i. Culled oldest %i records.",
before_count, before, self.size_limit, culled)
# public API methods:
def add_record(self, msg_id, rec):
"""Add a new Task Record, by msg_id."""
if msg_id in self._records:
raise KeyError("Already have msg_id %r" % (msg_id))
self._records[msg_id] = rec
self._add_bytes(rec)
self._maybe_cull()
def get_record(self, msg_id):
"""Get a specific Task Record, by msg_id."""
if msg_id in self._culled_ids:
raise KeyError("Record %r has been culled for size" % msg_id)
if not msg_id in self._records:
raise KeyError("No such msg_id %r" % (msg_id))
return copy(self._records[msg_id])
def update_record(self, msg_id, rec):
"""Update the data in an existing record."""
if msg_id in self._culled_ids:
raise KeyError("Record %r has been culled for size" % msg_id)
_rec = self._records[msg_id]
self._drop_bytes(_rec)
_rec.update(rec)
self._add_bytes(_rec)
def drop_matching_records(self, check):
"""Remove a record from the DB."""
matches = self._match(check)
for rec in matches:
self._drop_bytes(rec)
del self._records[rec['msg_id']]
def drop_record(self, msg_id):
"""Remove a record from the DB."""
rec = self._records[msg_id]
self._drop_bytes(rec)
del self._records[msg_id]
def find_records(self, check, keys=None):
"""Find records matching a query dict, optionally extracting subset of keys.
Returns dict keyed by msg_id of matching records.
Parameters
----------
check: dict
mongodb-style query argument
keys: list of strs [optional]
if specified, the subset of keys to extract. msg_id will *always* be
included.
"""
matches = self._match(check)
if keys:
return [self._extract_subdict(rec, keys) for rec in matches]
else:
return matches
def get_history(self):
"""get all msg_ids, ordered by time submitted."""
msg_ids = list(self._records.keys())
# Remove any that do not have a submitted timestamp.
# This is extremely unlikely to happen,
# but it seems to come up in some tests on VMs.
msg_ids = [
m for m in msg_ids if self._records[m]['submitted'] is not None
]
return sorted(msg_ids, key=lambda m: self._records[m]['submitted'])
class LoadBalancedView(View):
"""An load-balancing View that only executes via the Task scheduler.
Load-balanced views can be created with the client's `view` method:
>>> v = client.load_balanced_view()
or targets can be specified, to restrict the potential destinations:
>>> v = client.client.load_balanced_view([1,3])
which would restrict loadbalancing to between engines 1 and 3.
"""
follow = Any()
after = Any()
timeout = CFloat()
retries = Integer(0)
_task_scheme = Any()
_flag_names = List(
['targets', 'block', 'track', 'follow', 'after', 'timeout', 'retries'])
def __init__(self, client=None, socket=None, **flags):
super(LoadBalancedView, self).__init__(client=client,
socket=socket,
**flags)
self._task_scheme = client._task_scheme
def _validate_dependency(self, dep):
"""validate a dependency.
For use in `set_flags`.
"""
if dep is None or isinstance(dep,
(basestring, AsyncResult, Dependency)):
return True
elif isinstance(dep, (list, set, tuple)):
for d in dep:
if not isinstance(d, (basestring, AsyncResult)):
return False
elif isinstance(dep, dict):
if set(dep.keys()) != set(Dependency().as_dict().keys()):
return False
if not isinstance(dep['msg_ids'], list):
return False
for d in dep['msg_ids']:
if not isinstance(d, basestring):
return False
else:
return False
return True
def _render_dependency(self, dep):
"""helper for building jsonable dependencies from various input forms."""
if isinstance(dep, Dependency):
return dep.as_dict()
elif isinstance(dep, AsyncResult):
return dep.msg_ids
elif dep is None:
return []
else:
# pass to Dependency constructor
return list(Dependency(dep))
def set_flags(self, **kwargs):
"""set my attribute flags by keyword.
A View is a wrapper for the Client's apply method, but with attributes
that specify keyword arguments, those attributes can be set by keyword
argument with this method.
Parameters
----------
block : bool
whether to wait for results
track : bool
whether to create a MessageTracker to allow the user to
safely edit after arrays and buffers during non-copying
sends.
after : Dependency or collection of msg_ids
Only for load-balanced execution (targets=None)
Specify a list of msg_ids as a time-based dependency.
This job will only be run *after* the dependencies
have been met.
follow : Dependency or collection of msg_ids
Only for load-balanced execution (targets=None)
Specify a list of msg_ids as a location-based dependency.
This job will only be run on an engine where this dependency
is met.
timeout : float/int or None
Only for load-balanced execution (targets=None)
Specify an amount of time (in seconds) for the scheduler to
wait for dependencies to be met before failing with a
DependencyTimeout.
retries : int
Number of times a task will be retried on failure.
"""
super(LoadBalancedView, self).set_flags(**kwargs)
for name in ('follow', 'after'):
if name in kwargs:
value = kwargs[name]
if self._validate_dependency(value):
setattr(self, name, value)
else:
raise ValueError("Invalid dependency: %r" % value)
if 'timeout' in kwargs:
t = kwargs['timeout']
if not isinstance(t, (int, long, float, type(None))):
raise TypeError("Invalid type for timeout: %r" % type(t))
if t is not None:
if t < 0:
raise ValueError("Invalid timeout: %s" % t)
self.timeout = t
@sync_results
@save_ids
def _really_apply(self,
f,
args=None,
kwargs=None,
block=None,
track=None,
after=None,
follow=None,
timeout=None,
targets=None,
retries=None):
"""calls f(*args, **kwargs) on a remote engine, returning the result.
This method temporarily sets all of `apply`'s flags for a single call.
Parameters
----------
f : callable
args : list [default: empty]
kwargs : dict [default: empty]
block : bool [default: self.block]
whether to block
track : bool [default: self.track]
whether to ask zmq to track the message, for safe non-copying sends
!!!!!! TODO: THE REST HERE !!!!
Returns
-------
if self.block is False:
returns AsyncResult
else:
returns actual result of f(*args, **kwargs) on the engine(s)
This will be a list of self.targets is also a list (even length 1), or
the single result if self.targets is an integer engine id
"""
# validate whether we can run
if self._socket.closed:
msg = "Task farming is disabled"
if self._task_scheme == 'pure':
msg += " because the pure ZMQ scheduler cannot handle"
msg += " disappearing engines."
raise RuntimeError(msg)
if self._task_scheme == 'pure':
# pure zmq scheme doesn't support extra features
msg = "Pure ZMQ scheduler doesn't support the following flags:"
"follow, after, retries, targets, timeout"
if (follow or after or retries or targets or timeout):
# hard fail on Scheduler flags
raise RuntimeError(msg)
if isinstance(f, dependent):
# soft warn on functional dependencies
warnings.warn(msg, RuntimeWarning)
# build args
args = [] if args is None else args
kwargs = {} if kwargs is None else kwargs
block = self.block if block is None else block
track = self.track if track is None else track
after = self.after if after is None else after
retries = self.retries if retries is None else retries
follow = self.follow if follow is None else follow
timeout = self.timeout if timeout is None else timeout
targets = self.targets if targets is None else targets
if not isinstance(retries, int):
raise TypeError('retries must be int, not %r' % type(retries))
if targets is None:
idents = []
else:
idents = self.client._build_targets(targets)[0]
# ensure *not* bytes
idents = [ident.decode() for ident in idents]
after = self._render_dependency(after)
follow = self._render_dependency(follow)
subheader = dict(after=after,
follow=follow,
timeout=timeout,
targets=idents,
retries=retries)
msg = self.client.send_apply_request(self._socket,
f,
args,
kwargs,
track=track,
subheader=subheader)
tracker = None if track is False else msg['tracker']
ar = AsyncResult(self.client,
msg['header']['msg_id'],
fname=getname(f),
targets=None,
tracker=tracker)
if block:
try:
return ar.get()
except KeyboardInterrupt:
pass
return ar
@spin_after
@save_ids
def map(self, f, *sequences, **kwargs):
"""view.map(f, *sequences, block=self.block, chunksize=1, ordered=True) => list|AsyncMapResult
Parallel version of builtin `map`, load-balanced by this View.
`block`, and `chunksize` can be specified by keyword only.
Each `chunksize` elements will be a separate task, and will be
load-balanced. This lets individual elements be available for iteration
as soon as they arrive.
Parameters
----------
f : callable
function to be mapped
*sequences: one or more sequences of matching length
the sequences to be distributed and passed to `f`
block : bool [default self.block]
whether to wait for the result or not
track : bool
whether to create a MessageTracker to allow the user to
safely edit after arrays and buffers during non-copying
sends.
chunksize : int [default 1]
how many elements should be in each task.
ordered : bool [default True]
Whether the results should be gathered as they arrive, or enforce
the order of submission.
Only applies when iterating through AsyncMapResult as results arrive.
Has no effect when block=True.
Returns
-------
if block=False:
AsyncMapResult
An object like AsyncResult, but which reassembles the sequence of results
into a single list. AsyncMapResults can be iterated through before all
results are complete.
else:
the result of map(f,*sequences)
"""
# default
block = kwargs.get('block', self.block)
chunksize = kwargs.get('chunksize', 1)
ordered = kwargs.get('ordered', True)
keyset = set(kwargs.keys())
extra_keys = keyset.difference_update(set(['block', 'chunksize']))
if extra_keys:
raise TypeError("Invalid kwargs: %s" % list(extra_keys))
assert len(sequences) > 0, "must have some sequences to map onto!"
pf = ParallelFunction(self,
f,
block=block,
chunksize=chunksize,
ordered=ordered)
return pf.map(*sequences)
class TerminalInteractiveShell(InteractiveShell):
autoedit_syntax = CBool(False,
config=True,
help="auto editing of files with syntax errors.")
banner = Unicode('')
banner1 = Unicode(
default_banner,
config=True,
help="""The part of the banner to be printed before the profile""")
banner2 = Unicode(
'',
config=True,
help="""The part of the banner to be printed after the profile""")
confirm_exit = CBool(
True,
config=True,
help="""
Set to confirm when you try to exit IPython with an EOF (Control-D
in Unix, Control-Z/Enter in Windows). By typing 'exit' or 'quit',
you can force a direct exit without any confirmation.""",
)
# This display_banner only controls whether or not self.show_banner()
# is called when mainloop/interact are called. The default is False
# because for the terminal based application, the banner behavior
# is controlled by Global.display_banner, which IPythonApp looks at
# to determine if *it* should call show_banner() by hand or not.
display_banner = CBool(False) # This isn't configurable!
embedded = CBool(False)
embedded_active = CBool(False)
editor = Unicode(
get_default_editor(),
config=True,
help="Set the editor used by IPython (default to $EDITOR/vi/notepad).")
pager = Unicode('less',
config=True,
help="The shell program to be used for paging.")
screen_length = Integer(
0,
config=True,
help="""Number of lines of your screen, used to control printing of very
long strings. Strings longer than this number of lines will be sent
through a pager instead of directly printed. The default value for
this is 0, which means IPython will auto-detect your screen size every
time it needs to print certain potentially long strings (this doesn't
change the behavior of the 'print' keyword, it's only triggered
internally). If for some reason this isn't working well (it needs
curses support), specify it yourself. Otherwise don't change the
default.""",
)
term_title = CBool(False,
config=True,
help="Enable auto setting the terminal title.")
# In the terminal, GUI control is done via PyOS_InputHook
from IPython.lib.inputhook import enable_gui
enable_gui = staticmethod(enable_gui)
def __init__(self,
config=None,
ipython_dir=None,
profile_dir=None,
user_ns=None,
user_module=None,
custom_exceptions=((), None),
usage=None,
banner1=None,
banner2=None,
display_banner=None):
super(TerminalInteractiveShell,
self).__init__(config=config,
profile_dir=profile_dir,
user_ns=user_ns,
user_module=user_module,
custom_exceptions=custom_exceptions)
# use os.system instead of utils.process.system by default,
# because piped system doesn't make sense in the Terminal:
self.system = self.system_raw
self.init_term_title()
self.init_usage(usage)
self.init_banner(banner1, banner2, display_banner)
#-------------------------------------------------------------------------
# Things related to the terminal
#-------------------------------------------------------------------------
@property
def usable_screen_length(self):
if self.screen_length == 0:
return 0
else:
num_lines_bot = self.separate_in.count('\n') + 1
return self.screen_length - num_lines_bot
def init_term_title(self):
# Enable or disable the terminal title.
if self.term_title:
toggle_set_term_title(True)
set_term_title('IPython: ' + abbrev_cwd())
else:
toggle_set_term_title(False)
#-------------------------------------------------------------------------
# Things related to aliases
#-------------------------------------------------------------------------
def init_alias(self):
# The parent class defines aliases that can be safely used with any
# frontend.
super(TerminalInteractiveShell, self).init_alias()
# Now define aliases that only make sense on the terminal, because they
# need direct access to the console in a way that we can't emulate in
# GUI or web frontend
if os.name == 'posix':
aliases = [('clear', 'clear'), ('more', 'more'), ('less', 'less'),
('man', 'man')]
elif os.name == 'nt':
aliases = [('cls', 'cls')]
for name, cmd in aliases:
self.alias_manager.define_alias(name, cmd)
#-------------------------------------------------------------------------
# Things related to the banner and usage
#-------------------------------------------------------------------------
def _banner1_changed(self):
self.compute_banner()
def _banner2_changed(self):
self.compute_banner()
def _term_title_changed(self, name, new_value):
self.init_term_title()
def init_banner(self, banner1, banner2, display_banner):
if banner1 is not None:
self.banner1 = banner1
if banner2 is not None:
self.banner2 = banner2
if display_banner is not None:
self.display_banner = display_banner
self.compute_banner()
def show_banner(self, banner=None):
if banner is None:
banner = self.banner
self.write(banner)
def compute_banner(self):
self.banner = self.banner1
if self.profile and self.profile != 'default':
self.banner += '\nIPython profile: %s\n' % self.profile
if self.banner2:
self.banner += '\n' + self.banner2
def init_usage(self, usage=None):
if usage is None:
self.usage = interactive_usage
else:
self.usage = usage
#-------------------------------------------------------------------------
# Mainloop and code execution logic
#-------------------------------------------------------------------------
def mainloop(self, display_banner=None):
"""Start the mainloop.
If an optional banner argument is given, it will override the
internally created default banner.
"""
with nested(self.builtin_trap, self.display_trap):
while 1:
try:
self.interact(display_banner=display_banner)
#self.interact_with_readline()
# XXX for testing of a readline-decoupled repl loop, call
# interact_with_readline above
break
except KeyboardInterrupt:
# this should not be necessary, but KeyboardInterrupt
# handling seems rather unpredictable...
self.write("\nKeyboardInterrupt in interact()\n")
def _replace_rlhist_multiline(self, source_raw, hlen_before_cell):
"""Store multiple lines as a single entry in history"""
# do nothing without readline or disabled multiline
if not self.has_readline or not self.multiline_history:
return hlen_before_cell
# windows rl has no remove_history_item
if not hasattr(self.readline, "remove_history_item"):
return hlen_before_cell
# skip empty cells
if not source_raw.rstrip():
return hlen_before_cell
# nothing changed do nothing, e.g. when rl removes consecutive dups
hlen = self.readline.get_current_history_length()
if hlen == hlen_before_cell:
return hlen_before_cell
for i in range(hlen - hlen_before_cell):
self.readline.remove_history_item(hlen - i - 1)
stdin_encoding = get_stream_enc(sys.stdin, 'utf-8')
self.readline.add_history(
py3compat.unicode_to_str(source_raw.rstrip(), stdin_encoding))
return self.readline.get_current_history_length()
def interact(self, display_banner=None):
"""Closely emulate the interactive Python console."""
# batch run -> do not interact
if self.exit_now:
return
if display_banner is None:
display_banner = self.display_banner
if isinstance(display_banner, basestring):
self.show_banner(display_banner)
elif display_banner:
self.show_banner()
more = False
if self.has_readline:
self.readline_startup_hook(self.pre_readline)
hlen_b4_cell = self.readline.get_current_history_length()
else:
hlen_b4_cell = 0
# exit_now is set by a call to %Exit or %Quit, through the
# ask_exit callback.
while not self.exit_now:
self.hooks.pre_prompt_hook()
if more:
try:
prompt = self.prompt_manager.render('in2')
except:
self.showtraceback()
if self.autoindent:
self.rl_do_indent = True
else:
try:
prompt = self.separate_in + self.prompt_manager.render(
'in')
except:
self.showtraceback()
try:
line = self.raw_input(prompt)
if self.exit_now:
# quick exit on sys.std[in|out] close
break
if self.autoindent:
self.rl_do_indent = False
except KeyboardInterrupt:
#double-guard against keyboardinterrupts during kbdint handling
try:
self.write('\nKeyboardInterrupt\n')
source_raw = self.input_splitter.source_raw_reset()[1]
hlen_b4_cell = \
self._replace_rlhist_multiline(source_raw, hlen_b4_cell)
more = False
except KeyboardInterrupt:
pass
except EOFError:
if self.autoindent:
self.rl_do_indent = False
if self.has_readline:
self.readline_startup_hook(None)
self.write('\n')
self.exit()
except bdb.BdbQuit:
warn(
'The Python debugger has exited with a BdbQuit exception.\n'
'Because of how pdb handles the stack, it is impossible\n'
'for IPython to properly format this particular exception.\n'
'IPython will resume normal operation.')
except:
# exceptions here are VERY RARE, but they can be triggered
# asynchronously by signal handlers, for example.
self.showtraceback()
else:
self.input_splitter.push(line)
more = self.input_splitter.push_accepts_more()
if (self.SyntaxTB.last_syntax_error and self.autoedit_syntax):
self.edit_syntax_error()
if not more:
source_raw = self.input_splitter.source_raw_reset()[1]
self.run_cell(source_raw, store_history=True)
hlen_b4_cell = \
self._replace_rlhist_multiline(source_raw, hlen_b4_cell)
# Turn off the exit flag, so the mainloop can be restarted if desired
self.exit_now = False
def raw_input(self, prompt=''):
"""Write a prompt and read a line.
The returned line does not include the trailing newline.
When the user enters the EOF key sequence, EOFError is raised.
Optional inputs:
- prompt(''): a string to be printed to prompt the user.
- continue_prompt(False): whether this line is the first one or a
continuation in a sequence of inputs.
"""
# Code run by the user may have modified the readline completer state.
# We must ensure that our completer is back in place.
if self.has_readline:
self.set_readline_completer()
try:
line = py3compat.str_to_unicode(self.raw_input_original(prompt))
except ValueError:
warn("\n********\nYou or a %run:ed script called sys.stdin.close()"
" or sys.stdout.close()!\nExiting IPython!")
self.ask_exit()
return ""
# Try to be reasonably smart about not re-indenting pasted input more
# than necessary. We do this by trimming out the auto-indent initial
# spaces, if the user's actual input started itself with whitespace.
if self.autoindent:
if num_ini_spaces(line) > self.indent_current_nsp:
line = line[self.indent_current_nsp:]
self.indent_current_nsp = 0
return line
#-------------------------------------------------------------------------
# Methods to support auto-editing of SyntaxErrors.
#-------------------------------------------------------------------------
def edit_syntax_error(self):
"""The bottom half of the syntax error handler called in the main loop.
Loop until syntax error is fixed or user cancels.
"""
while self.SyntaxTB.last_syntax_error:
# copy and clear last_syntax_error
err = self.SyntaxTB.clear_err_state()
if not self._should_recompile(err):
return
try:
# may set last_syntax_error again if a SyntaxError is raised
self.safe_execfile(err.filename, self.user_ns)
except:
self.showtraceback()
else:
try:
f = open(err.filename)
try:
# This should be inside a display_trap block and I
# think it is.
sys.displayhook(f.read())
finally:
f.close()
except:
self.showtraceback()
def _should_recompile(self, e):
"""Utility routine for edit_syntax_error"""
if e.filename in ('<ipython console>', '<input>', '<string>',
'<console>', '<BackgroundJob compilation>', None):
return False
try:
if (self.autoedit_syntax and not self.ask_yes_no(
'Return to editor to correct syntax error? '
'[Y/n] ', 'y')):
return False
except EOFError:
return False
def int0(x):
try:
return int(x)
except TypeError:
return 0
# always pass integer line and offset values to editor hook
try:
self.hooks.fix_error_editor(e.filename, int0(e.lineno),
int0(e.offset), e.msg)
except TryNext:
warn('Could not open editor')
return False
return True
#-------------------------------------------------------------------------
# Things related to exiting
#-------------------------------------------------------------------------
def ask_exit(self):
""" Ask the shell to exit. Can be overiden and used as a callback. """
self.exit_now = True
def exit(self):
"""Handle interactive exit.
This method calls the ask_exit callback."""
if self.confirm_exit:
if self.ask_yes_no('Do you really want to exit ([y]/n)?', 'y'):
self.ask_exit()
else:
self.ask_exit()
#-------------------------------------------------------------------------
# Things related to magics
#-------------------------------------------------------------------------
def init_magics(self):
super(TerminalInteractiveShell, self).init_magics()
self.register_magics(TerminalMagics)
def showindentationerror(self):
super(TerminalInteractiveShell, self).showindentationerror()
print(
"If you want to paste code into IPython, try the "
"%paste and %cpaste magic functions.")
class RemoteSpawner(Spawner):
"""A Spawner that just uses Popen to start local processes."""
INTERRUPT_TIMEOUT = Integer(10, config=True, \
help="Seconds to wait for process to halt after SIGINT before proceeding to SIGTERM"
)
TERM_TIMEOUT = Integer(5, config=True, \
help="Seconds to wait for process to halt after SIGTERM before proceeding to SIGKILL"
)
KILL_TIMEOUT = Integer(5, config=True, \
help="Seconds to wait for process to halt after SIGKILL before giving up"
)
server_url = Unicode("localhost", config=True, \
help="url of the remote server")
server_user = Unicode("jupyterhub", config=True, \
help="user with passwordless SSH access to the server")
user_keyfile = Unicode("", config=True, \
help="Private key for user")
channel = Instance(paramiko.client.SSHClient)
pid = Integer(0)
def make_preexec_fn(self, name):
"""make preexec fn"""
return set_user_setuid(name)
def load_state(self, state):
"""load pid from state"""
super(RemoteSpawner, self).load_state(state)
if 'pid' in state:
self.pid = state['pid']
def get_state(self):
"""add pid to state"""
state = super(RemoteSpawner, self).get_state()
if self.pid:
state['pid'] = self.pid
return state
def clear_state(self):
"""clear pid state"""
super(RemoteSpawner, self).clear_state()
self.pid = 0
def user_env(self, env):
"""get user environment"""
env['USER'] = self.user.name
env['HOME'] = pwd.getpwnam(self.user.name).pw_dir
return env
def _env_default(self):
env = super()._env_default()
return self.user_env(env)
@gen.coroutine
def start(self):
"""Start the process"""
self.user.server.port = random_port()
self.user.server.ip = self.server_url
cmd = []
env = self.env.copy()
cmd.extend(self.cmd)
cmd.extend(self.get_args())
self.log.debug("Env: %s", str(env))
self.channel = paramiko.SSHClient()
self.channel.set_missing_host_key_policy(paramiko.AutoAddPolicy())
self.channel.connect(self.server_url,
username=self.server_user,
key_filename=self.user_keyfile)
# self.proc = Popen(cmd, env=env, \
# preexec_fn=self.make_preexec_fn(self.user.name),
# )
self.log.info("Spawning %s", ' '.join(cmd))
for item in env.items():
cmd.insert(0, 'export %s="%s";' % item)
self.pid, stdin, stdout, stderr = execute(self, self.channel,
' '.join(cmd),
self.user.name)
self.log.info("Process PID is %d" % self.pid)
#self.log.info("Setting up SSH tunnel")
#setup_ssh_tunnel(self.user.server.port, self.server_user, self.server_url, self.user_keyfile)
#self.log.debug("Error %s", ''.join(stderr.readlines()))
@gen.coroutine
def poll(self):
"""Poll the process"""
# for now just assume it is ok
return None
### if we started the process, poll with Popen
##if self.proc is not None:
## status = self.proc.poll()
## if status is not None:
## # clear state if the process is done
## self.clear_state()
## return status
### if we resumed from stored state,
### we don't have the Popen handle anymore, so rely on self.pid
##if not self.pid:
## # no pid, not running
## self.clear_state()
## return 0
### send signal 0 to check if PID exists
### this doesn't work on Windows, but that's okay because we don't support Windows.
##alive = yield self._signal(0)
##if not alive:
## self.clear_state()
## return 0
##else:
## return None
@gen.coroutine
def _signal(self, sig):
"""simple implementation of signal
we can use it when we are using setuid (we are root)"""
# try:
# os.kill(self.pid, sig)
#except OSError as e:
# if e.errno == errno.ESRCH:
# return False # process is gone
# else:
# raise
return True # process exists
@gen.coroutine
def stop(self, now=False):
"""stop the subprocess
if `now`, skip waiting for clean shutdown
"""
return
class Session(Configurable):
"""Object for handling serialization and sending of messages.
The Session object handles building messages and sending them
with ZMQ sockets or ZMQStream objects. Objects can communicate with each
other over the network via Session objects, and only need to work with the
dict-based IPython message spec. The Session will handle
serialization/deserialization, security, and metadata.
Sessions support configurable serialiization via packer/unpacker traits,
and signing with HMAC digests via the key/keyfile traits.
Parameters
----------
debug : bool
whether to trigger extra debugging statements
packer/unpacker : str : 'json', 'pickle' or import_string
importstrings for methods to serialize message parts. If just
'json' or 'pickle', predefined JSON and pickle packers will be used.
Otherwise, the entire importstring must be used.
The functions must accept at least valid JSON input, and output *bytes*.
For example, to use msgpack:
packer = 'msgpack.packb', unpacker='msgpack.unpackb'
pack/unpack : callables
You can also set the pack/unpack callables for serialization directly.
session : bytes
the ID of this Session object. The default is to generate a new UUID.
username : unicode
username added to message headers. The default is to ask the OS.
key : bytes
The key used to initialize an HMAC signature. If unset, messages
will not be signed or checked.
keyfile : filepath
The file containing a key. If this is set, `key` will be initialized
to the contents of the file.
"""
debug = Bool(False, config=True, help="""Debug output in the Session""")
packer = DottedObjectName(
'json',
config=True,
help="""The name of the packer for serializing messages.
Should be one of 'json', 'pickle', or an import name
for a custom callable serializer.""")
def _packer_changed(self, name, old, new):
if new.lower() == 'json':
self.pack = json_packer
self.unpack = json_unpacker
self.unpacker = new
elif new.lower() == 'pickle':
self.pack = pickle_packer
self.unpack = pickle_unpacker
self.unpacker = new
else:
self.pack = import_item(str(new))
unpacker = DottedObjectName(
'json',
config=True,
help="""The name of the unpacker for unserializing messages.
Only used with custom functions for `packer`.""")
def _unpacker_changed(self, name, old, new):
if new.lower() == 'json':
self.pack = json_packer
self.unpack = json_unpacker
self.packer = new
elif new.lower() == 'pickle':
self.pack = pickle_packer
self.unpack = pickle_unpacker
self.packer = new
else:
self.unpack = import_item(str(new))
session = CUnicode(u'',
config=True,
help="""The UUID identifying this session.""")
def _session_default(self):
u = unicode(uuid.uuid4())
self.bsession = u.encode('ascii')
return u
def _session_changed(self, name, old, new):
self.bsession = self.session.encode('ascii')
# bsession is the session as bytes
bsession = CBytes(b'')
username = Unicode(
os.environ.get('USER', u'username'),
config=True,
help="""Username for the Session. Default is your system username.""")
metadata = Dict(
{},
config=True,
help=
"""Metadata dictionary, which serves as the default top-level metadata dict for each message."""
)
# message signature related traits:
key = CBytes(b'',
config=True,
help="""execution key, for extra authentication.""")
def _key_changed(self, name, old, new):
if new:
self.auth = hmac.HMAC(new)
else:
self.auth = None
auth = Instance(hmac.HMAC)
digest_history = Set()
keyfile = Unicode('',
config=True,
help="""path to file containing execution key.""")
def _keyfile_changed(self, name, old, new):
with open(new, 'rb') as f:
self.key = f.read().strip()
# for protecting against sends from forks
pid = Integer()
# serialization traits:
pack = Any(default_packer) # the actual packer function
def _pack_changed(self, name, old, new):
if not callable(new):
raise TypeError("packer must be callable, not %s" % type(new))
unpack = Any(default_unpacker) # the actual packer function
def _unpack_changed(self, name, old, new):
# unpacker is not checked - it is assumed to be
if not callable(new):
raise TypeError("unpacker must be callable, not %s" % type(new))
# thresholds:
copy_threshold = Integer(
2**16,
config=True,
help=
"Threshold (in bytes) beyond which a buffer should be sent without copying."
)
buffer_threshold = Integer(
MAX_BYTES,
config=True,
help=
"Threshold (in bytes) beyond which an object's buffer should be extracted to avoid pickling."
)
item_threshold = Integer(
MAX_ITEMS,
config=True,
help=
"""The maximum number of items for a container to be introspected for custom serialization.
Containers larger than this are pickled outright.
""")
def __init__(self, **kwargs):
"""create a Session object
Parameters
----------
debug : bool
whether to trigger extra debugging statements
packer/unpacker : str : 'json', 'pickle' or import_string
importstrings for methods to serialize message parts. If just
'json' or 'pickle', predefined JSON and pickle packers will be used.
Otherwise, the entire importstring must be used.
The functions must accept at least valid JSON input, and output
*bytes*.
For example, to use msgpack:
packer = 'msgpack.packb', unpacker='msgpack.unpackb'
pack/unpack : callables
You can also set the pack/unpack callables for serialization
directly.
session : unicode (must be ascii)
the ID of this Session object. The default is to generate a new
UUID.
bsession : bytes
The session as bytes
username : unicode
username added to message headers. The default is to ask the OS.
key : bytes
The key used to initialize an HMAC signature. If unset, messages
will not be signed or checked.
keyfile : filepath
The file containing a key. If this is set, `key` will be
initialized to the contents of the file.
"""
super(Session, self).__init__(**kwargs)
self._check_packers()
self.none = self.pack({})
# ensure self._session_default() if necessary, so bsession is defined:
self.session
self.pid = os.getpid()
@property
def msg_id(self):
"""always return new uuid"""
return str(uuid.uuid4())
def _check_packers(self):
"""check packers for binary data and datetime support."""
pack = self.pack
unpack = self.unpack
# check simple serialization
msg = dict(a=[1, 'hi'])
try:
packed = pack(msg)
except Exception:
raise ValueError("packer could not serialize a simple message")
# ensure packed message is bytes
if not isinstance(packed, bytes):
raise ValueError("message packed to %r, but bytes are required" %
type(packed))
# check that unpack is pack's inverse
try:
unpacked = unpack(packed)
except Exception:
raise ValueError("unpacker could not handle the packer's output")
# check datetime support
msg = dict(t=datetime.now())
try:
unpacked = unpack(pack(msg))
except Exception:
self.pack = lambda o: pack(squash_dates(o))
self.unpack = lambda s: extract_dates(unpack(s))
def msg_header(self, msg_type):
return msg_header(self.msg_id, msg_type, self.username, self.session)
def msg(self,
msg_type,
content=None,
parent=None,
header=None,
metadata=None):
"""Return the nested message dict.
This format is different from what is sent over the wire. The
serialize/unserialize methods converts this nested message dict to the wire
format, which is a list of message parts.
"""
msg = {}
header = self.msg_header(msg_type) if header is None else header
msg['header'] = header
msg['msg_id'] = header['msg_id']
msg['msg_type'] = header['msg_type']
msg['parent_header'] = {} if parent is None else extract_header(parent)
msg['content'] = {} if content is None else content
msg['metadata'] = self.metadata.copy()
if metadata is not None:
msg['metadata'].update(metadata)
return msg
def sign(self, msg_list):
"""Sign a message with HMAC digest. If no auth, return b''.
Parameters
----------
msg_list : list
The [p_header,p_parent,p_content] part of the message list.
"""
if self.auth is None:
return b''
h = self.auth.copy()
for m in msg_list:
h.update(m)
return str_to_bytes(h.hexdigest())
def serialize(self, msg, ident=None):
"""Serialize the message components to bytes.
This is roughly the inverse of unserialize. The serialize/unserialize
methods work with full message lists, whereas pack/unpack work with
the individual message parts in the message list.
Parameters
----------
msg : dict or Message
The nexted message dict as returned by the self.msg method.
Returns
-------
msg_list : list
The list of bytes objects to be sent with the format:
[ident1,ident2,...,DELIM,HMAC,p_header,p_parent,p_metadata,p_content,
buffer1,buffer2,...]. In this list, the p_* entities are
the packed or serialized versions, so if JSON is used, these
are utf8 encoded JSON strings.
"""
content = msg.get('content', {})
if content is None:
content = self.none
elif isinstance(content, dict):
content = self.pack(content)
elif isinstance(content, bytes):
# content is already packed, as in a relayed message
pass
elif isinstance(content, unicode):
# should be bytes, but JSON often spits out unicode
content = content.encode('utf8')
else:
raise TypeError("Content incorrect type: %s" % type(content))
real_message = [
self.pack(msg['header']),
self.pack(msg['parent_header']),
self.pack(msg['metadata']),
content,
]
to_send = []
if isinstance(ident, list):
# accept list of idents
to_send.extend(ident)
elif ident is not None:
to_send.append(ident)
to_send.append(DELIM)
signature = self.sign(real_message)
to_send.append(signature)
to_send.extend(real_message)
return to_send
def send(self,
stream,
msg_or_type,
content=None,
parent=None,
ident=None,
buffers=None,
track=False,
header=None,
metadata=None):
"""Build and send a message via stream or socket.
The message format used by this function internally is as follows:
[ident1,ident2,...,DELIM,HMAC,p_header,p_parent,p_content,
buffer1,buffer2,...]
The serialize/unserialize methods convert the nested message dict into this
format.
Parameters
----------
stream : zmq.Socket or ZMQStream
The socket-like object used to send the data.
msg_or_type : str or Message/dict
Normally, msg_or_type will be a msg_type unless a message is being
sent more than once. If a header is supplied, this can be set to
None and the msg_type will be pulled from the header.
content : dict or None
The content of the message (ignored if msg_or_type is a message).
header : dict or None
The header dict for the message (ignored if msg_to_type is a message).
parent : Message or dict or None
The parent or parent header describing the parent of this message
(ignored if msg_or_type is a message).
ident : bytes or list of bytes
The zmq.IDENTITY routing path.
metadata : dict or None
The metadata describing the message
buffers : list or None
The already-serialized buffers to be appended to the message.
track : bool
Whether to track. Only for use with Sockets, because ZMQStream
objects cannot track messages.
Returns
-------
msg : dict
The constructed message.
"""
if not isinstance(stream, zmq.Socket):
# ZMQStreams and dummy sockets do not support tracking.
track = False
if isinstance(msg_or_type, (Message, dict)):
# We got a Message or message dict, not a msg_type so don't
# build a new Message.
msg = msg_or_type
else:
msg = self.msg(msg_or_type,
content=content,
parent=parent,
header=header,
metadata=metadata)
if not os.getpid() == self.pid:
io.rprint("WARNING: attempted to send message from fork")
io.rprint(msg)
return
buffers = [] if buffers is None else buffers
to_send = self.serialize(msg, ident)
to_send.extend(buffers)
longest = max([len(s) for s in to_send])
copy = (longest < self.copy_threshold)
if buffers and track and not copy:
# only really track when we are doing zero-copy buffers
tracker = stream.send_multipart(to_send, copy=False, track=True)
else:
# use dummy tracker, which will be done immediately
tracker = DONE
stream.send_multipart(to_send, copy=copy)
if self.debug:
pprint.pprint(msg)
pprint.pprint(to_send)
pprint.pprint(buffers)
msg['tracker'] = tracker
return msg
def send_raw(self, stream, msg_list, flags=0, copy=True, ident=None):
"""Send a raw message via ident path.
This method is used to send a already serialized message.
Parameters
----------
stream : ZMQStream or Socket
The ZMQ stream or socket to use for sending the message.
msg_list : list
The serialized list of messages to send. This only includes the
[p_header,p_parent,p_metadata,p_content,buffer1,buffer2,...] portion of
the message.
ident : ident or list
A single ident or a list of idents to use in sending.
"""
to_send = []
if isinstance(ident, bytes):
ident = [ident]
if ident is not None:
to_send.extend(ident)
to_send.append(DELIM)
to_send.append(self.sign(msg_list))
to_send.extend(msg_list)
stream.send_multipart(msg_list, flags, copy=copy)
def recv(self, socket, mode=zmq.NOBLOCK, content=True, copy=True):
"""Receive and unpack a message.
Parameters
----------
socket : ZMQStream or Socket
The socket or stream to use in receiving.
Returns
-------
[idents], msg
[idents] is a list of idents and msg is a nested message dict of
same format as self.msg returns.
"""
if isinstance(socket, ZMQStream):
socket = socket.socket
try:
msg_list = socket.recv_multipart(mode, copy=copy)
except zmq.ZMQError as e:
if e.errno == zmq.EAGAIN:
# We can convert EAGAIN to None as we know in this case
# recv_multipart won't return None.
return None, None
else:
raise
# split multipart message into identity list and message dict
# invalid large messages can cause very expensive string comparisons
idents, msg_list = self.feed_identities(msg_list, copy)
try:
return idents, self.unserialize(msg_list,
content=content,
copy=copy)
except Exception as e:
# TODO: handle it
raise e
def feed_identities(self, msg_list, copy=True):
"""Split the identities from the rest of the message.
Feed until DELIM is reached, then return the prefix as idents and
remainder as msg_list. This is easily broken by setting an IDENT to DELIM,
but that would be silly.
Parameters
----------
msg_list : a list of Message or bytes objects
The message to be split.
copy : bool
flag determining whether the arguments are bytes or Messages
Returns
-------
(idents, msg_list) : two lists
idents will always be a list of bytes, each of which is a ZMQ
identity. msg_list will be a list of bytes or zmq.Messages of the
form [HMAC,p_header,p_parent,p_content,buffer1,buffer2,...] and
should be unpackable/unserializable via self.unserialize at this
point.
"""
if copy:
idx = msg_list.index(DELIM)
return msg_list[:idx], msg_list[idx + 1:]
else:
failed = True
for idx, m in enumerate(msg_list):
if m.bytes == DELIM:
failed = False
break
if failed:
raise ValueError("DELIM not in msg_list")
idents, msg_list = msg_list[:idx], msg_list[idx + 1:]
return [m.bytes for m in idents], msg_list
def unserialize(self, msg_list, content=True, copy=True):
"""Unserialize a msg_list to a nested message dict.
This is roughly the inverse of serialize. The serialize/unserialize
methods work with full message lists, whereas pack/unpack work with
the individual message parts in the message list.
Parameters:
-----------
msg_list : list of bytes or Message objects
The list of message parts of the form [HMAC,p_header,p_parent,
p_metadata,p_content,buffer1,buffer2,...].
content : bool (True)
Whether to unpack the content dict (True), or leave it packed
(False).
copy : bool (True)
Whether to return the bytes (True), or the non-copying Message
object in each place (False).
Returns
-------
msg : dict
The nested message dict with top-level keys [header, parent_header,
content, buffers].
"""
minlen = 5
message = {}
if not copy:
for i in range(minlen):
msg_list[i] = msg_list[i].bytes
if self.auth is not None:
signature = msg_list[0]
if not signature:
raise ValueError("Unsigned Message")
if signature in self.digest_history:
raise ValueError("Duplicate Signature: %r" % signature)
self.digest_history.add(signature)
check = self.sign(msg_list[1:5])
if not signature == check:
raise ValueError("Invalid Signature: %r" % signature)
if not len(msg_list) >= minlen:
raise TypeError(
"malformed message, must have at least %i elements" % minlen)
header = self.unpack(msg_list[1])
message['header'] = header
message['msg_id'] = header['msg_id']
message['msg_type'] = header['msg_type']
message['parent_header'] = self.unpack(msg_list[2])
message['metadata'] = self.unpack(msg_list[3])
if content:
message['content'] = self.unpack(msg_list[4])
else:
message['content'] = msg_list[4]
message['buffers'] = msg_list[5:]
return message
class NotebookApp(BaseIPythonApplication):
name = 'ipython-notebook'
description = """
The IPython HTML Notebook.
This launches a Tornado based HTML Notebook Server that serves up an
HTML5/Javascript Notebook client.
"""
examples = _examples
classes = IPythonConsoleApp.classes + [
MappingKernelManager, NotebookManager, FileNotebookManager,
NotebookNotary
]
flags = Dict(flags)
aliases = Dict(aliases)
subcommands = dict(list=(NbserverListApp,
NbserverListApp.description.splitlines()[0]), )
kernel_argv = List(Unicode)
def _log_level_default(self):
return logging.INFO
def _log_format_default(self):
"""override default log format to include time"""
return u"%(asctime)s.%(msecs).03d [%(name)s]%(highlevel)s %(message)s"
# create requested profiles by default, if they don't exist:
auto_create = Bool(True)
# file to be opened in the notebook server
file_to_run = Unicode('', config=True)
def _file_to_run_changed(self, name, old, new):
path, base = os.path.split(new)
if path:
self.file_to_run = base
self.notebook_dir = path
# Network related information.
ip = Unicode(config=True,
help="The IP address the notebook server will listen on.")
def _ip_default(self):
return localhost()
def _ip_changed(self, name, old, new):
if new == u'*': self.ip = u''
port = Integer(8888,
config=True,
help="The port the notebook server will listen on.")
port_retries = Integer(
50,
config=True,
help=
"The number of additional ports to try if the specified port is not available."
)
certfile = Unicode(
u'',
config=True,
help="""The full path to an SSL/TLS certificate file.""")
keyfile = Unicode(
u'',
config=True,
help="""The full path to a private key file for usage with SSL/TLS.""")
cookie_secret = Bytes(b'',
config=True,
help="""The random bytes used to secure cookies.
By default this is a new random number every time you start the Notebook.
Set it to a value in a config file to enable logins to persist across server sessions.
Note: Cookie secrets should be kept private, do not share config files with
cookie_secret stored in plaintext (you can read the value from a file).
""")
def _cookie_secret_default(self):
return os.urandom(1024)
password = Unicode(u'',
config=True,
help="""Hashed password to use for web authentication.
To generate, type in a python/IPython shell:
from IPython.lib import passwd; passwd()
The string should be of the form type:salt:hashed-password.
""")
open_browser = Bool(True,
config=True,
help="""Whether to open in a browser after starting.
The specific browser used is platform dependent and
determined by the python standard library `webbrowser`
module, unless it is overridden using the --browser
(NotebookApp.browser) configuration option.
""")
browser = Unicode(u'',
config=True,
help="""Specify what command to use to invoke a web
browser when opening the notebook. If not specified, the
default browser will be determined by the `webbrowser`
standard library module, which allows setting of the
BROWSER environment variable to override it.
""")
webapp_settings = Dict(
config=True,
help="Supply overrides for the tornado.web.Application that the "
"IPython notebook uses.")
jinja_environment_options = Dict(
config=True,
help="Supply extra arguments that will be passed to Jinja environment."
)
enable_mathjax = Bool(
True,
config=True,
help="""Whether to enable MathJax for typesetting math/TeX
MathJax is the javascript library IPython uses to render math/LaTeX. It is
very large, so you may want to disable it if you have a slow internet
connection, or for offline use of the notebook.
When disabled, equations etc. will appear as their untransformed TeX source.
""")
def _enable_mathjax_changed(self, name, old, new):
"""set mathjax url to empty if mathjax is disabled"""
if not new:
self.mathjax_url = u''
base_url = Unicode('/',
config=True,
help='''The base URL for the notebook server.
Leading and trailing slashes can be omitted,
and will automatically be added.
''')
def _base_url_changed(self, name, old, new):
if not new.startswith('/'):
self.base_url = '/' + new
elif not new.endswith('/'):
self.base_url = new + '/'
base_project_url = Unicode('/',
config=True,
help="""DEPRECATED use base_url""")
def _base_project_url_changed(self, name, old, new):
self.log.warn("base_project_url is deprecated, use base_url")
self.base_url = new
extra_static_paths = List(
Unicode,
config=True,
help="""Extra paths to search for serving static files.
This allows adding javascript/css to be available from the notebook server machine,
or overriding individual files in the IPython""")
def _extra_static_paths_default(self):
return [os.path.join(self.profile_dir.location, 'static')]
@property
def static_file_path(self):
"""return extra paths + the default location"""
return self.extra_static_paths + [DEFAULT_STATIC_FILES_PATH]
nbextensions_path = List(
Unicode,
config=True,
help=
"""paths for Javascript extensions. By default, this is just IPYTHONDIR/nbextensions"""
)
def _nbextensions_path_default(self):
return [os.path.join(get_ipython_dir(), 'nbextensions')]
mathjax_url = Unicode("", config=True, help="""The url for MathJax.js.""")
def _mathjax_url_default(self):
if not self.enable_mathjax:
return u''
static_url_prefix = self.webapp_settings.get(
"static_url_prefix", url_path_join(self.base_url, "static"))
# try local mathjax, either in nbextensions/mathjax or static/mathjax
for (url_prefix, search_path) in [
(url_path_join(self.base_url,
"nbextensions"), self.nbextensions_path),
(static_url_prefix, self.static_file_path),
]:
self.log.debug("searching for local mathjax in %s", search_path)
try:
mathjax = filefind(os.path.join('mathjax', 'MathJax.js'),
search_path)
except IOError:
continue
else:
url = url_path_join(url_prefix, u"mathjax/MathJax.js")
self.log.info("Serving local MathJax from %s at %s", mathjax,
url)
return url
# no local mathjax, serve from CDN
if self.certfile:
# HTTPS: load from Rackspace CDN, because SSL certificate requires it
host = u"https://c328740.ssl.cf1.rackcdn.com"
else:
host = u"http://cdn.mathjax.org"
url = host + u"/mathjax/latest/MathJax.js"
self.log.info("Using MathJax from CDN: %s", url)
return url
def _mathjax_url_changed(self, name, old, new):
if new and not self.enable_mathjax:
# enable_mathjax=False overrides mathjax_url
self.mathjax_url = u''
else:
self.log.info("Using MathJax: %s", new)
notebook_manager_class = DottedObjectName(
'IPython.html.services.notebooks.filenbmanager.FileNotebookManager',
config=True,
help='The notebook manager class to use.')
trust_xheaders = Bool(
False,
config=True,
help=
("Whether to trust or not X-Scheme/X-Forwarded-Proto and X-Real-Ip/X-Forwarded-For headers"
"sent by the upstream reverse proxy. Necessary if the proxy handles SSL"
))
info_file = Unicode()
def _info_file_default(self):
info_file = "nbserver-%s.json" % os.getpid()
return os.path.join(self.profile_dir.security_dir, info_file)
notebook_dir = Unicode(
py3compat.getcwd(),
config=True,
help="The directory to use for notebooks and kernels.")
def _notebook_dir_changed(self, name, old, new):
"""Do a bit of validation of the notebook dir."""
if not os.path.isabs(new):
# If we receive a non-absolute path, make it absolute.
self.notebook_dir = os.path.abspath(new)
return
if not os.path.isdir(new):
raise TraitError("No such notebook dir: %r" % new)
# setting App.notebook_dir implies setting notebook and kernel dirs as well
self.config.FileNotebookManager.notebook_dir = new
self.config.MappingKernelManager.root_dir = new
def parse_command_line(self, argv=None):
super(NotebookApp, self).parse_command_line(argv)
if self.extra_args:
arg0 = self.extra_args[0]
f = os.path.abspath(arg0)
self.argv.remove(arg0)
if not os.path.exists(f):
self.log.critical("No such file or directory: %s", f)
self.exit(1)
# Use config here, to ensure that it takes higher priority than
# anything that comes from the profile.
if os.path.isdir(f):
self.config.NotebookApp.notebook_dir = f
elif os.path.isfile(f):
self.config.NotebookApp.file_to_run = f
def init_kernel_argv(self):
"""construct the kernel arguments"""
# Scrub frontend-specific flags
self.kernel_argv = swallow_argv(self.argv, notebook_aliases,
notebook_flags)
if any(arg.startswith(u'--pylab') for arg in self.kernel_argv):
self.log.warn('\n '.join([
"Starting all kernels in pylab mode is not recommended,",
"and will be disabled in a future release.",
"Please use the %matplotlib magic to enable matplotlib instead.",
"pylab implies many imports, which can have confusing side effects",
"and harm the reproducibility of your notebooks.",
]))
# Kernel should inherit default config file from frontend
self.kernel_argv.append("--IPKernelApp.parent_appname='%s'" %
self.name)
# Kernel should get *absolute* path to profile directory
self.kernel_argv.extend(["--profile-dir", self.profile_dir.location])
def init_configurables(self):
# force Session default to be secure
default_secure(self.config)
self.kernel_manager = MappingKernelManager(
parent=self,
log=self.log,
kernel_argv=self.kernel_argv,
connection_dir=self.profile_dir.security_dir,
)
kls = import_item(self.notebook_manager_class)
self.notebook_manager = kls(parent=self, log=self.log)
self.session_manager = SessionManager(parent=self, log=self.log)
self.cluster_manager = ClusterManager(parent=self, log=self.log)
self.cluster_manager.update_profiles()
def init_logging(self):
# This prevents double log messages because tornado use a root logger that
# self.log is a child of. The logging module dipatches log messages to a log
# and all of its ancenstors until propagate is set to False.
self.log.propagate = False
# hook up tornado 3's loggers to our app handlers
for name in ('access', 'application', 'general'):
logger = logging.getLogger('tornado.%s' % name)
logger.parent = self.log
logger.setLevel(self.log.level)
def init_webapp(self):
"""initialize tornado webapp and httpserver"""
self.web_app = NotebookWebApplication(
self, self.kernel_manager, self.notebook_manager,
self.cluster_manager, self.session_manager, self.log,
self.base_url, self.webapp_settings,
self.jinja_environment_options)
if self.certfile:
ssl_options = dict(certfile=self.certfile)
if self.keyfile:
ssl_options['keyfile'] = self.keyfile
else:
ssl_options = None
self.web_app.password = self.password
self.http_server = httpserver.HTTPServer(self.web_app,
ssl_options=ssl_options,
xheaders=self.trust_xheaders)
if not self.ip:
warning = "WARNING: The notebook server is listening on all IP addresses"
if ssl_options is None:
self.log.critical(warning + " and not using encryption. This "
"is not recommended.")
if not self.password:
self.log.critical(
warning + " and not using authentication. "
"This is highly insecure and not recommended.")
success = None
for port in random_ports(self.port, self.port_retries + 1):
try:
self.http_server.listen(port, self.ip)
except socket.error as e:
if e.errno == errno.EADDRINUSE:
self.log.info(
'The port %i is already in use, trying another random port.'
% port)
continue
elif e.errno in (errno.EACCES,
getattr(errno, 'WSAEACCES', errno.EACCES)):
self.log.warn("Permission to listen on port %i denied" %
port)
continue
else:
raise
else:
self.port = port
success = True
break
if not success:
self.log.critical(
'ERROR: the notebook server could not be started because '
'no available port could be found.')
self.exit(1)
@property
def display_url(self):
ip = self.ip if self.ip else '[all ip addresses on your system]'
return self._url(ip)
@property
def connection_url(self):
ip = self.ip if self.ip else localhost()
return self._url(ip)
def _url(self, ip):
proto = 'https' if self.certfile else 'http'
return "%s://%s:%i%s" % (proto, ip, self.port, self.base_url)
def init_signal(self):
if not sys.platform.startswith('win'):
signal.signal(signal.SIGINT, self._handle_sigint)
signal.signal(signal.SIGTERM, self._signal_stop)
if hasattr(signal, 'SIGUSR1'):
# Windows doesn't support SIGUSR1
signal.signal(signal.SIGUSR1, self._signal_info)
if hasattr(signal, 'SIGINFO'):
# only on BSD-based systems
signal.signal(signal.SIGINFO, self._signal_info)
def _handle_sigint(self, sig, frame):
"""SIGINT handler spawns confirmation dialog"""
# register more forceful signal handler for ^C^C case
signal.signal(signal.SIGINT, self._signal_stop)
# request confirmation dialog in bg thread, to avoid
# blocking the App
thread = threading.Thread(target=self._confirm_exit)
thread.daemon = True
thread.start()
def _restore_sigint_handler(self):
"""callback for restoring original SIGINT handler"""
signal.signal(signal.SIGINT, self._handle_sigint)
def _confirm_exit(self):
"""confirm shutdown on ^C
A second ^C, or answering 'y' within 5s will cause shutdown,
otherwise original SIGINT handler will be restored.
This doesn't work on Windows.
"""
# FIXME: remove this delay when pyzmq dependency is >= 2.1.11
time.sleep(0.1)
info = self.log.info
info('interrupted')
print(self.notebook_info())
sys.stdout.write("Shutdown this notebook server (y/[n])? ")
sys.stdout.flush()
r, w, x = select.select([sys.stdin], [], [], 5)
if r:
line = sys.stdin.readline()
if line.lower().startswith('y'):
self.log.critical("Shutdown confirmed")
ioloop.IOLoop.instance().stop()
return
else:
print("No answer for 5s:", end=' ')
print("resuming operation...")
# no answer, or answer is no:
# set it back to original SIGINT handler
# use IOLoop.add_callback because signal.signal must be called
# from main thread
ioloop.IOLoop.instance().add_callback(self._restore_sigint_handler)
def _signal_stop(self, sig, frame):
self.log.critical("received signal %s, stopping", sig)
ioloop.IOLoop.instance().stop()
def _signal_info(self, sig, frame):
print(self.notebook_info())
def init_components(self):
"""Check the components submodule, and warn if it's unclean"""
status = submodule.check_submodule_status()
if status == 'missing':
self.log.warn(
"components submodule missing, running `git submodule update`")
submodule.update_submodules(submodule.ipython_parent())
elif status == 'unclean':
self.log.warn(
"components submodule unclean, you may see 404s on static/components"
)
self.log.warn(
"run `setup.py submodule` or `git submodule update` to update")
@catch_config_error
def initialize(self, argv=None):
super(NotebookApp, self).initialize(argv)
self.init_logging()
self.init_kernel_argv()
self.init_configurables()
self.init_components()
self.init_webapp()
self.init_signal()
def cleanup_kernels(self):
"""Shutdown all kernels.
The kernels will shutdown themselves when this process no longer exists,
but explicit shutdown allows the KernelManagers to cleanup the connection files.
"""
self.log.info('Shutting down kernels')
self.kernel_manager.shutdown_all()
def notebook_info(self):
"Return the current working directory and the server url information"
info = self.notebook_manager.info_string() + "\n"
info += "%d active kernels \n" % len(self.kernel_manager._kernels)
return info + "The IPython Notebook is running at: %s" % self.display_url
def server_info(self):
"""Return a JSONable dict of information about this server."""
return {
'url': self.connection_url,
'hostname': self.ip if self.ip else 'localhost',
'port': self.port,
'secure': bool(self.certfile),
'base_url': self.base_url,
'notebook_dir': os.path.abspath(self.notebook_dir),
}
def write_server_info_file(self):
"""Write the result of server_info() to the JSON file info_file."""
with open(self.info_file, 'w') as f:
json.dump(self.server_info(), f, indent=2)
def remove_server_info_file(self):
"""Remove the nbserver-<pid>.json file created for this server.
Ignores the error raised when the file has already been removed.
"""
try:
os.unlink(self.info_file)
except OSError as e:
if e.errno != errno.ENOENT:
raise
def start(self):
""" Start the IPython Notebook server app, after initialization
This method takes no arguments so all configuration and initialization
must be done prior to calling this method."""
if self.subapp is not None:
return self.subapp.start()
info = self.log.info
for line in self.notebook_info().split("\n"):
info(line)
info(
"Use Control-C to stop this server and shut down all kernels (twice to skip confirmation)."
)
self.write_server_info_file()
if self.open_browser or self.file_to_run:
try:
browser = webbrowser.get(self.browser or None)
except webbrowser.Error as e:
self.log.warn('No web browser found: %s.' % e)
browser = None
if self.file_to_run:
fullpath = os.path.join(self.notebook_dir, self.file_to_run)
if not os.path.exists(fullpath):
self.log.critical("%s does not exist" % fullpath)
self.exit(1)
uri = url_path_join('notebooks', self.file_to_run)
else:
uri = 'tree'
if browser:
b = lambda: browser.open(
url_path_join(self.connection_url, uri), new=2)
threading.Thread(target=b).start()
try:
ioloop.IOLoop.instance().start()
except KeyboardInterrupt:
info("Interrupted...")
finally:
self.cleanup_kernels()
self.remove_server_info_file()
class MappingKernelManager(MultiKernelManager):
"""A KernelManager that handles notebok mapping and HTTP error handling"""
kernel_argv = List(Unicode)
time_to_dead = Float(3.0, config=True, help="""Kernel heartbeat interval in seconds.""")
first_beat = Float(5.0, config=True, help="Delay (in seconds) before sending first heartbeat.")
max_msg_size = Integer(65536, config=True, help="""
The max raw message size accepted from the browser
over a WebSocket connection.
""")
_notebook_mapping = Dict()
#-------------------------------------------------------------------------
# Methods for managing kernels and sessions
#-------------------------------------------------------------------------
def kernel_for_notebook(self, notebook_id):
"""Return the kernel_id for a notebook_id or None."""
return self._notebook_mapping.get(notebook_id)
def set_kernel_for_notebook(self, notebook_id, kernel_id):
"""Associate a notebook with a kernel."""
if notebook_id is not None:
self._notebook_mapping[notebook_id] = kernel_id
def notebook_for_kernel(self, kernel_id):
"""Return the notebook_id for a kernel_id or None."""
notebook_ids = [k for k, v in self._notebook_mapping.iteritems() if v == kernel_id]
if len(notebook_ids) == 1:
return notebook_ids[0]
else:
return None
def delete_mapping_for_kernel(self, kernel_id):
"""Remove the kernel/notebook mapping for kernel_id."""
notebook_id = self.notebook_for_kernel(kernel_id)
if notebook_id is not None:
del self._notebook_mapping[notebook_id]
def start_kernel(self, notebook_id=None):
"""Start a kernel for a notebok an return its kernel_id.
Parameters
----------
notebook_id : uuid
The uuid of the notebook to associate the new kernel with. If this
is not None, this kernel will be persistent whenever the notebook
requests a kernel.
"""
kernel_id = self.kernel_for_notebook(notebook_id)
if kernel_id is None:
kwargs = dict()
kwargs['extra_arguments'] = self.kernel_argv
kernel_id = super(MappingKernelManager, self).start_kernel(**kwargs)
self.set_kernel_for_notebook(notebook_id, kernel_id)
self.log.info("Kernel started: %s" % kernel_id)
self.log.debug("Kernel args: %r" % kwargs)
else:
self.log.info("Using existing kernel: %s" % kernel_id)
return kernel_id
def kill_kernel(self, kernel_id):
"""Kill a kernel and remove its notebook association."""
self._check_kernel_id(kernel_id)
super(MappingKernelManager, self).kill_kernel(kernel_id)
self.delete_mapping_for_kernel(kernel_id)
self.log.info("Kernel killed: %s" % kernel_id)
def interrupt_kernel(self, kernel_id):
"""Interrupt a kernel."""
self._check_kernel_id(kernel_id)
super(MappingKernelManager, self).interrupt_kernel(kernel_id)
self.log.info("Kernel interrupted: %s" % kernel_id)
def restart_kernel(self, kernel_id):
"""Restart a kernel while keeping clients connected."""
self._check_kernel_id(kernel_id)
km = self.get_kernel(kernel_id)
km.restart_kernel(now=True)
self.log.info("Kernel restarted: %s" % kernel_id)
return kernel_id
# the following remains, in case the KM restart machinery is
# somehow unacceptable
# Get the notebook_id to preserve the kernel/notebook association.
notebook_id = self.notebook_for_kernel(kernel_id)
# Create the new kernel first so we can move the clients over.
new_kernel_id = self.start_kernel()
# Now kill the old kernel.
self.kill_kernel(kernel_id)
# Now save the new kernel/notebook association. We have to save it
# after the old kernel is killed as that will delete the mapping.
self.set_kernel_for_notebook(notebook_id, new_kernel_id)
self.log.info("Kernel restarted: %s" % new_kernel_id)
return new_kernel_id
def create_iopub_stream(self, kernel_id):
"""Create a new iopub stream."""
self._check_kernel_id(kernel_id)
return super(MappingKernelManager, self).create_iopub_stream(kernel_id)
def create_shell_stream(self, kernel_id):
"""Create a new shell stream."""
self._check_kernel_id(kernel_id)
return super(MappingKernelManager, self).create_shell_stream(kernel_id)
def create_hb_stream(self, kernel_id):
"""Create a new hb stream."""
self._check_kernel_id(kernel_id)
return super(MappingKernelManager, self).create_hb_stream(kernel_id)
def _check_kernel_id(self, kernel_id):
"""Check a that a kernel_id exists and raise 404 if not."""
if kernel_id not in self:
raise web.HTTPError(404, u'Kernel does not exist: %s' % kernel_id)
class IPKernelApp(BaseIPythonApplication, InteractiveShellApp,
ConnectionFileMixin):
name = 'ipython-kernel'
aliases = Dict(kernel_aliases)
flags = Dict(kernel_flags)
classes = [IPythonKernel, ZMQInteractiveShell, ProfileDir, Session]
# the kernel class, as an importstring
kernel_class = Type('ipython_kernel.ipkernel.IPythonKernel',
config=True,
klass='ipython_kernel.kernelbase.Kernel',
help="""The Kernel subclass to be used.
This should allow easy re-use of the IPKernelApp entry point
to configure and launch kernels other than IPython's own.
""")
kernel = Any()
poller = Any(
) # don't restrict this even though current pollers are all Threads
heartbeat = Instance(Heartbeat, allow_none=True)
ports = Dict()
# connection info:
@property
def abs_connection_file(self):
if os.path.basename(self.connection_file) == self.connection_file:
return os.path.join(self.profile_dir.security_dir,
self.connection_file)
else:
return self.connection_file
# streams, etc.
no_stdout = Bool(False,
config=True,
help="redirect stdout to the null device")
no_stderr = Bool(False,
config=True,
help="redirect stderr to the null device")
outstream_class = DottedObjectName(
'ipython_kernel.iostream.OutStream',
config=True,
help="The importstring for the OutStream factory")
displayhook_class = DottedObjectName(
'ipython_kernel.displayhook.ZMQDisplayHook',
config=True,
help="The importstring for the DisplayHook factory")
# polling
parent_handle = Integer(
int(os.environ.get('JPY_PARENT_PID') or 0),
config=True,
help="""kill this process if its parent dies. On Windows, the argument
specifies the HANDLE of the parent process, otherwise it is simply boolean.
""")
interrupt = Integer(int(os.environ.get('JPY_INTERRUPT_EVENT') or 0),
config=True,
help="""ONLY USED ON WINDOWS
Interrupt this process when the parent is signaled.
""")
def init_crash_handler(self):
# Install minimal exception handling
sys.excepthook = FormattedTB(mode='Verbose',
color_scheme='NoColor',
ostream=sys.__stdout__)
def init_poller(self):
if sys.platform == 'win32':
if self.interrupt or self.parent_handle:
self.poller = ParentPollerWindows(self.interrupt,
self.parent_handle)
elif self.parent_handle:
self.poller = ParentPollerUnix()
def _bind_socket(self, s, port):
iface = '%s://%s' % (self.transport, self.ip)
if self.transport == 'tcp':
if port <= 0:
port = s.bind_to_random_port(iface)
else:
s.bind("tcp://%s:%i" % (self.ip, port))
elif self.transport == 'ipc':
if port <= 0:
port = 1
path = "%s-%i" % (self.ip, port)
while os.path.exists(path):
port = port + 1
path = "%s-%i" % (self.ip, port)
else:
path = "%s-%i" % (self.ip, port)
s.bind("ipc://%s" % path)
return port
def write_connection_file(self):
"""write connection info to JSON file"""
cf = self.abs_connection_file
self.log.debug("Writing connection file: %s", cf)
write_connection_file(cf,
ip=self.ip,
key=self.session.key,
transport=self.transport,
shell_port=self.shell_port,
stdin_port=self.stdin_port,
hb_port=self.hb_port,
iopub_port=self.iopub_port,
control_port=self.control_port)
def cleanup_connection_file(self):
cf = self.abs_connection_file
self.log.debug("Cleaning up connection file: %s", cf)
try:
os.remove(cf)
except (IOError, OSError):
pass
self.cleanup_ipc_files()
def init_connection_file(self):
if not self.connection_file:
self.connection_file = "kernel-%s.json" % os.getpid()
try:
self.connection_file = filefind(
self.connection_file, ['.', self.profile_dir.security_dir])
except IOError:
self.log.debug("Connection file not found: %s",
self.connection_file)
# This means I own it, so I will clean it up:
atexit.register(self.cleanup_connection_file)
return
try:
self.load_connection_file()
except Exception:
self.log.error("Failed to load connection file: %r",
self.connection_file,
exc_info=True)
self.exit(1)
def init_sockets(self):
# Create a context, a session, and the kernel sockets.
self.log.info("Starting the kernel at pid: %i", os.getpid())
context = zmq.Context.instance()
# Uncomment this to try closing the context.
# atexit.register(context.term)
self.shell_socket = context.socket(zmq.ROUTER)
self.shell_socket.linger = 1000
self.shell_port = self._bind_socket(self.shell_socket, self.shell_port)
self.log.debug("shell ROUTER Channel on port: %i" % self.shell_port)
self.iopub_socket = context.socket(zmq.PUB)
self.iopub_socket.linger = 1000
self.iopub_port = self._bind_socket(self.iopub_socket, self.iopub_port)
self.log.debug("iopub PUB Channel on port: %i" % self.iopub_port)
self.stdin_socket = context.socket(zmq.ROUTER)
self.stdin_socket.linger = 1000
self.stdin_port = self._bind_socket(self.stdin_socket, self.stdin_port)
self.log.debug("stdin ROUTER Channel on port: %i" % self.stdin_port)
self.control_socket = context.socket(zmq.ROUTER)
self.control_socket.linger = 1000
self.control_port = self._bind_socket(self.control_socket,
self.control_port)
self.log.debug("control ROUTER Channel on port: %i" %
self.control_port)
def init_heartbeat(self):
"""start the heart beating"""
# heartbeat doesn't share context, because it mustn't be blocked
# by the GIL, which is accessed by libzmq when freeing zero-copy messages
hb_ctx = zmq.Context()
self.heartbeat = Heartbeat(hb_ctx,
(self.transport, self.ip, self.hb_port))
self.hb_port = self.heartbeat.port
self.log.debug("Heartbeat REP Channel on port: %i" % self.hb_port)
self.heartbeat.start()
def log_connection_info(self):
"""display connection info, and store ports"""
basename = os.path.basename(self.connection_file)
if basename == self.connection_file or \
os.path.dirname(self.connection_file) == self.profile_dir.security_dir:
# use shortname
tail = basename
if self.profile != 'default':
tail += " --profile %s" % self.profile
else:
tail = self.connection_file
lines = [
"To connect another client to this kernel, use:",
" --existing %s" % tail,
]
# log connection info
# info-level, so often not shown.
# frontends should use the %connect_info magic
# to see the connection info
for line in lines:
self.log.info(line)
# also raw print to the terminal if no parent_handle (`ipython kernel`)
if not self.parent_handle:
io.rprint(_ctrl_c_message)
for line in lines:
io.rprint(line)
self.ports = dict(shell=self.shell_port,
iopub=self.iopub_port,
stdin=self.stdin_port,
hb=self.hb_port,
control=self.control_port)
def init_blackhole(self):
"""redirects stdout/stderr to devnull if necessary"""
if self.no_stdout or self.no_stderr:
blackhole = open(os.devnull, 'w')
if self.no_stdout:
sys.stdout = sys.__stdout__ = blackhole
if self.no_stderr:
sys.stderr = sys.__stderr__ = blackhole
def init_io(self):
"""Redirect input streams and set a display hook."""
if self.outstream_class:
outstream_factory = import_item(str(self.outstream_class))
sys.stdout = outstream_factory(self.session, self.iopub_socket,
u'stdout')
sys.stderr = outstream_factory(self.session, self.iopub_socket,
u'stderr')
if self.displayhook_class:
displayhook_factory = import_item(str(self.displayhook_class))
sys.displayhook = displayhook_factory(self.session,
self.iopub_socket)
def init_signal(self):
signal.signal(signal.SIGINT, signal.SIG_IGN)
def init_kernel(self):
"""Create the Kernel object itself"""
shell_stream = ZMQStream(self.shell_socket)
control_stream = ZMQStream(self.control_socket)
kernel_factory = self.kernel_class.instance
kernel = kernel_factory(
parent=self,
session=self.session,
shell_streams=[shell_stream, control_stream],
iopub_socket=self.iopub_socket,
stdin_socket=self.stdin_socket,
log=self.log,
profile_dir=self.profile_dir,
user_ns=self.user_ns,
)
kernel.record_ports(self.ports)
self.kernel = kernel
def init_gui_pylab(self):
"""Enable GUI event loop integration, taking pylab into account."""
# Provide a wrapper for :meth:`InteractiveShellApp.init_gui_pylab`
# to ensure that any exception is printed straight to stderr.
# Normally _showtraceback associates the reply with an execution,
# which means frontends will never draw it, as this exception
# is not associated with any execute request.
shell = self.shell
_showtraceback = shell._showtraceback
try:
# replace error-sending traceback with stderr
def print_tb(etype, evalue, stb):
print("GUI event loop or pylab initialization failed",
file=io.stderr)
print(shell.InteractiveTB.stb2text(stb), file=io.stderr)
shell._showtraceback = print_tb
InteractiveShellApp.init_gui_pylab(self)
finally:
shell._showtraceback = _showtraceback
def init_shell(self):
self.shell = getattr(self.kernel, 'shell', None)
if self.shell:
self.shell.configurables.append(self)
@catch_config_error
def initialize(self, argv=None):
super(IPKernelApp, self).initialize(argv)
self.init_blackhole()
self.init_connection_file()
self.init_poller()
self.init_sockets()
self.init_heartbeat()
# writing/displaying connection info must be *after* init_sockets/heartbeat
self.log_connection_info()
self.write_connection_file()
self.init_io()
self.init_signal()
self.init_kernel()
# shell init steps
self.init_path()
self.init_shell()
if self.shell:
self.init_gui_pylab()
self.init_extensions()
self.init_code()
# flush stdout/stderr, so that anything written to these streams during
# initialization do not get associated with the first execution request
sys.stdout.flush()
sys.stderr.flush()
def start(self):
if self.poller is not None:
self.poller.start()
self.kernel.start()
try:
ioloop.IOLoop.instance().start()
except KeyboardInterrupt:
pass
class HeartMonitor(LoggingConfigurable):
"""A basic HeartMonitor class
pingstream: a PUB stream
pongstream: an ROUTER stream
period: the period of the heartbeat in milliseconds"""
period = Integer(
3000,
config=True,
help='The frequency at which the Hub pings the engines for heartbeats '
'(in ms)',
)
pingstream = Instance('zmq.eventloop.zmqstream.ZMQStream')
pongstream = Instance('zmq.eventloop.zmqstream.ZMQStream')
loop = Instance('zmq.eventloop.ioloop.IOLoop')
def _loop_default(self):
return ioloop.IOLoop.instance()
# not settable:
hearts = Set()
responses = Set()
on_probation = Set()
last_ping = CFloat(0)
_new_handlers = Set()
_failure_handlers = Set()
lifetime = CFloat(0)
tic = CFloat(0)
def __init__(self, **kwargs):
super(HeartMonitor, self).__init__(**kwargs)
self.pongstream.on_recv(self.handle_pong)
def start(self):
self.tic = time.time()
self.caller = ioloop.PeriodicCallback(self.beat, self.period,
self.loop)
self.caller.start()
def add_new_heart_handler(self, handler):
"""add a new handler for new hearts"""
self.log.debug("heartbeat::new_heart_handler: %s", handler)
self._new_handlers.add(handler)
def add_heart_failure_handler(self, handler):
"""add a new handler for heart failure"""
self.log.debug("heartbeat::new heart failure handler: %s", handler)
self._failure_handlers.add(handler)
def beat(self):
self.pongstream.flush()
self.last_ping = self.lifetime
toc = time.time()
self.lifetime += toc - self.tic
self.tic = toc
self.log.debug("heartbeat::sending %s", self.lifetime)
goodhearts = self.hearts.intersection(self.responses)
missed_beats = self.hearts.difference(goodhearts)
heartfailures = self.on_probation.intersection(missed_beats)
newhearts = self.responses.difference(goodhearts)
map(self.handle_new_heart, newhearts)
map(self.handle_heart_failure, heartfailures)
self.on_probation = missed_beats.intersection(self.hearts)
self.responses = set()
#print self.on_probation, self.hearts
# self.log.debug("heartbeat::beat %.3f, %i beating hearts", self.lifetime, len(self.hearts))
self.pingstream.send(str_to_bytes(str(self.lifetime)))
# flush stream to force immediate socket send
self.pingstream.flush()
def handle_new_heart(self, heart):
if self._new_handlers:
for handler in self._new_handlers:
handler(heart)
else:
self.log.info("heartbeat::yay, got new heart %s!", heart)
self.hearts.add(heart)
def handle_heart_failure(self, heart):
if self._failure_handlers:
for handler in self._failure_handlers:
try:
handler(heart)
except Exception as e:
self.log.error("heartbeat::Bad Handler! %s",
handler,
exc_info=True)
pass
else:
self.log.info("heartbeat::Heart %s failed :(", heart)
self.hearts.remove(heart)
@log_errors
def handle_pong(self, msg):
"a heart just beat"
current = str_to_bytes(str(self.lifetime))
last = str_to_bytes(str(self.last_ping))
if msg[1] == current:
delta = time.time() - self.tic
# self.log.debug("heartbeat::heart %r took %.2f ms to respond"%(msg[0], 1000*delta))
self.responses.add(msg[0])
elif msg[1] == last:
delta = time.time() - self.tic + (self.lifetime - self.last_ping)
self.log.warn(
"heartbeat::heart %r missed a beat, and took %.2f ms to respond",
msg[0], 1000 * delta)
self.responses.add(msg[0])
else:
self.log.warn(
"heartbeat::got bad heartbeat (possibly old?): %s (current=%.3f)",
msg[1], self.lifetime)
class IPClusterEngines(BaseParallelApplication):
name = 'ipcluster'
description = engines_help
examples = _engines_examples
usage = None
config_file_name = Unicode(default_config_file_name)
default_log_level = logging.INFO
classes = List()
def _classes_default(self):
from IPython.parallel.apps import launcher
launchers = launcher.all_launchers
eslaunchers = [l for l in launchers if 'EngineSet' in l.__name__]
return [ProfileDir] + eslaunchers
n = Integer(
num_cpus(),
config=True,
help=
"""The number of engines to start. The default is to use one for each
CPU on your machine""")
engine_launcher = Any(config=True,
help="Deprecated, use engine_launcher_class")
def _engine_launcher_changed(self, name, old, new):
if isinstance(new, str):
self.log.warn(
"WARNING: %s.engine_launcher is deprecated as of 0.12,"
" use engine_launcher_class" % self.__class__.__name__)
self.engine_launcher_class = new
engine_launcher_class = DottedObjectName(
'LocalEngineSetLauncher',
config=True,
help="""The class for launching a set of Engines. Change this value
to use various batch systems to launch your engines, such as PBS,SGE,MPI,etc.
Each launcher class has its own set of configuration options, for making sure
it will work in your environment.
You can also write your own launcher, and specify it's absolute import path,
as in 'mymodule.launcher.FTLEnginesLauncher`.
IPython's bundled examples include:
Local : start engines locally as subprocesses [default]
MPI : use mpiexec to launch engines in an MPI environment
PBS : use PBS (qsub) to submit engines to a batch queue
SGE : use SGE (qsub) to submit engines to a batch queue
LSF : use LSF (bsub) to submit engines to a batch queue
SSH : use SSH to start the controller
Note that SSH does *not* move the connection files
around, so you will likely have to do this manually
unless the machines are on a shared file system.
WindowsHPC : use Windows HPC
If you are using one of IPython's builtin launchers, you can specify just the
prefix, e.g:
c.IPClusterEngines.engine_launcher_class = 'SSH'
or:
ipcluster start --engines=MPI
""")
daemonize = Bool(
False,
config=True,
help="""Daemonize the ipcluster program. This implies --log-to-file.
Not available on Windows.
""")
def _daemonize_changed(self, name, old, new):
if new:
self.log_to_file = True
early_shutdown = Integer(30, config=True, help="The timeout (in seconds)")
_stopping = False
aliases = Dict(engine_aliases)
flags = Dict(engine_flags)
@catch_config_error
def initialize(self, argv=None):
super(IPClusterEngines, self).initialize(argv)
self.init_signal()
self.init_launchers()
def init_launchers(self):
self.engine_launcher = self.build_launcher(self.engine_launcher_class,
'EngineSet')
def init_signal(self):
# Setup signals
signal.signal(signal.SIGINT, self.sigint_handler)
def build_launcher(self, clsname, kind=None):
"""import and instantiate a Launcher based on importstring"""
try:
klass = find_launcher_class(clsname, kind)
except (ImportError, KeyError):
self.log.fatal("Could not import launcher class: %r" % clsname)
self.exit(1)
launcher = klass(
work_dir='.',
config=self.config,
log=self.log,
profile_dir=self.profile_dir.location,
cluster_id=self.cluster_id,
)
return launcher
def engines_started_ok(self):
self.log.info("Engines appear to have started successfully")
self.early_shutdown = 0
def start_engines(self):
# Some EngineSetLaunchers ignore `n` and use their own engine count, such as SSH:
n = getattr(self.engine_launcher, 'engine_count', self.n)
self.log.info("Starting %s Engines with %s", n,
self.engine_launcher_class)
self.engine_launcher.start(self.n)
self.engine_launcher.on_stop(self.engines_stopped_early)
if self.early_shutdown:
ioloop.DelayedCallback(self.engines_started_ok,
self.early_shutdown * 1000,
self.loop).start()
def engines_stopped_early(self, r):
if self.early_shutdown and not self._stopping:
self.log.error("""
Engines shutdown early, they probably failed to connect.
Check the engine log files for output.
If your controller and engines are not on the same machine, you probably
have to instruct the controller to listen on an interface other than localhost.
You can set this by adding "--ip='*'" to your ControllerLauncher.controller_args.
Be sure to read our security docs before instructing your controller to listen on
a public interface.
""")
self.stop_launchers()
return self.engines_stopped(r)
def engines_stopped(self, r):
return self.loop.stop()
def stop_engines(self):
if self.engine_launcher.running:
self.log.info("Stopping Engines...")
d = self.engine_launcher.stop()
return d
else:
return None
def stop_launchers(self, r=None):
if not self._stopping:
self._stopping = True
self.log.error("IPython cluster: stopping")
self.stop_engines()
# Wait a few seconds to let things shut down.
dc = ioloop.DelayedCallback(self.loop.stop, 3000, self.loop)
dc.start()
def sigint_handler(self, signum, frame):
self.log.debug("SIGINT received, stopping launchers...")
self.stop_launchers()
def start_logging(self):
# Remove old log files of the controller and engine
if self.clean_logs:
log_dir = self.profile_dir.log_dir
for f in os.listdir(log_dir):
if re.match(r'ip(engine|controller)z-\d+\.(log|err|out)', f):
os.remove(os.path.join(log_dir, f))
# This will remove old log files for ipcluster itself
# super(IPBaseParallelApplication, self).start_logging()
def start(self):
"""Start the app for the engines subcommand."""
self.log.info("IPython cluster: started")
# First see if the cluster is already running
# Now log and daemonize
self.log.info('Starting engines with [daemon=%r]' % self.daemonize)
# TODO: Get daemonize working on Windows or as a Windows Server.
if self.daemonize:
if os.name == 'posix':
daemonize()
dc = ioloop.DelayedCallback(self.start_engines, 0, self.loop)
dc.start()
# Now write the new pid file AFTER our new forked pid is active.
# self.write_pid_file()
try:
self.loop.start()
except KeyboardInterrupt:
pass
except zmq.ZMQError as e:
if e.errno == errno.EINTR:
pass
else:
raise
class PDFExporter(LatexExporter):
"""Writer designed to write to PDF files"""
latex_count = Integer(3, config=True,
help="How many times latex will be called."
)
latex_command = List([u"pdflatex", u"{filename}"], config=True,
help="Shell command used to compile latex."
)
bib_command = List([u"bibtex", u"{filename}"], config=True,
help="Shell command used to run bibtex."
)
verbose = Bool(False, config=True,
help="Whether to display the output of latex commands."
)
temp_file_exts = List(['.aux', '.bbl', '.blg', '.idx', '.log', '.out'], config=True,
help="File extensions of temp files to remove after running."
)
writer = Instance("IPython.nbconvert.writers.FilesWriter", args=())
def run_command(self, command_list, filename, count, log_function):
"""Run command_list count times.
Parameters
----------
command_list : list
A list of args to provide to Popen. Each element of this
list will be interpolated with the filename to convert.
filename : unicode
The name of the file to convert.
count : int
How many times to run the command.
Returns
-------
success : bool
A boolean indicating if the command was successful (True)
or failed (False).
"""
command = [c.format(filename=filename) for c in command_list]
#In windows and python 2.x there is a bug in subprocess.Popen and
# unicode commands are not supported
if sys.platform == 'win32' and sys.version_info < (3,0):
#We must use cp1252 encoding for calling subprocess.Popen
#Note that sys.stdin.encoding and encoding.DEFAULT_ENCODING
# could be different (cp437 in case of dos console)
command = [c.encode('cp1252') for c in command]
times = 'time' if count == 1 else 'times'
self.log.info("Running %s %i %s: %s", command_list[0], count, times, command)
with open(os.devnull, 'rb') as null:
stdout = subprocess.PIPE if not self.verbose else None
for index in range(count):
p = subprocess.Popen(command, stdout=stdout, stdin=null)
out, err = p.communicate()
if p.returncode:
if self.verbose:
# verbose means I didn't capture stdout with PIPE,
# so it's already been displayed and `out` is None.
out = u''
else:
out = out.decode('utf-8', 'replace')
log_function(command, out)
return False # failure
return True # success
def run_latex(self, filename):
"""Run pdflatex self.latex_count times."""
def log_error(command, out):
self.log.critical(u"%s failed: %s\n%s", command[0], command, out)
return self.run_command(self.latex_command, filename,
self.latex_count, log_error)
def run_bib(self, filename):
"""Run bibtex self.latex_count times."""
filename = os.path.splitext(filename)[0]
def log_error(command, out):
self.log.warn('%s had problems, most likely because there were no citations',
command[0])
self.log.debug(u"%s output: %s\n%s", command[0], command, out)
return self.run_command(self.bib_command, filename, 1, log_error)
def clean_temp_files(self, filename):
"""Remove temporary files created by pdflatex/bibtex."""
self.log.info("Removing temporary LaTeX files")
filename = os.path.splitext(filename)[0]
for ext in self.temp_file_exts:
try:
os.remove(filename+ext)
except OSError:
pass
def from_notebook_node(self, nb, resources=None, **kw):
latex, resources = super(PDFExporter, self).from_notebook_node(
nb, resources=resources, **kw
)
with TemporaryWorkingDirectory() as td:
notebook_name = "notebook"
tex_file = self.writer.write(latex, resources, notebook_name=notebook_name)
self.log.info("Building PDF")
rc = self.run_latex(tex_file)
if not rc:
rc = self.run_bib(tex_file)
if not rc:
rc = self.run_latex(tex_file)
pdf_file = notebook_name + '.pdf'
if not os.path.isfile(pdf_file):
raise RuntimeError("PDF creating failed")
self.log.info('PDF successfully created')
with open(pdf_file, 'rb') as f:
pdf_data = f.read()
# convert output extension to pdf
# the writer above required it to be tex
resources['output_extension'] = 'pdf'
return pdf_data, resources
class TaskScheduler(SessionFactory):
"""Python TaskScheduler object.
This is the simplest object that supports msg_id based
DAG dependencies. *Only* task msg_ids are checked, not
msg_ids of jobs submitted via the MUX queue.
"""
hwm = Integer(1,
config=True,
help="""specify the High Water Mark (HWM) for the downstream
socket in the Task scheduler. This is the maximum number
of allowed outstanding tasks on each engine.
The default (1) means that only one task can be outstanding on each
engine. Setting TaskScheduler.hwm=0 means there is no limit, and the
engines continue to be assigned tasks while they are working,
effectively hiding network latency behind computation, but can result
in an imbalance of work when submitting many heterogenous tasks all at
once. Any positive value greater than one is a compromise between the
two.
""")
scheme_name = Enum(
('leastload', 'pure', 'lru', 'plainrandom', 'weighted', 'twobin'),
'leastload',
config=True,
allow_none=False,
help="""select the task scheduler scheme [default: Python LRU]
Options are: 'pure', 'lru', 'plainrandom', 'weighted', 'twobin','leastload'"""
)
def _scheme_name_changed(self, old, new):
self.log.debug("Using scheme %r" % new)
self.scheme = globals()[new]
# input arguments:
scheme = Instance(FunctionType) # function for determining the destination
def _scheme_default(self):
return leastload
client_stream = Instance(zmqstream.ZMQStream) # client-facing stream
engine_stream = Instance(zmqstream.ZMQStream) # engine-facing stream
notifier_stream = Instance(zmqstream.ZMQStream) # hub-facing sub stream
mon_stream = Instance(zmqstream.ZMQStream) # hub-facing pub stream
query_stream = Instance(zmqstream.ZMQStream) # hub-facing DEALER stream
# internals:
queue = Instance(deque) # sorted list of Jobs
def _queue_default(self):
return deque()
queue_map = Dict() # dict by msg_id of Jobs (for O(1) access to the Queue)
graph = Dict() # dict by msg_id of [ msg_ids that depend on key ]
retries = Dict() # dict by msg_id of retries remaining (non-neg ints)
# waiting = List() # list of msg_ids ready to run, but haven't due to HWM
pending = Dict() # dict by engine_uuid of submitted tasks
completed = Dict() # dict by engine_uuid of completed tasks
failed = Dict() # dict by engine_uuid of failed tasks
destinations = Dict(
) # dict by msg_id of engine_uuids where jobs ran (reverse of completed+failed)
clients = Dict() # dict by msg_id for who submitted the task
targets = List() # list of target IDENTs
loads = List() # list of engine loads
# full = Set() # set of IDENTs that have HWM outstanding tasks
all_completed = Set() # set of all completed tasks
all_failed = Set() # set of all failed tasks
all_done = Set() # set of all finished tasks=union(completed,failed)
all_ids = Set() # set of all submitted task IDs
ident = CBytes() # ZMQ identity. This should just be self.session.session
# but ensure Bytes
def _ident_default(self):
return self.session.bsession
def start(self):
self.query_stream.on_recv(self.dispatch_query_reply)
self.session.send(self.query_stream, "connection_request", {})
self.engine_stream.on_recv(self.dispatch_result, copy=False)
self.client_stream.on_recv(self.dispatch_submission, copy=False)
self._notification_handlers = dict(
registration_notification=self._register_engine,
unregistration_notification=self._unregister_engine)
self.notifier_stream.on_recv(self.dispatch_notification)
self.log.info("Scheduler started [%s]" % self.scheme_name)
def resume_receiving(self):
"""Resume accepting jobs."""
self.client_stream.on_recv(self.dispatch_submission, copy=False)
def stop_receiving(self):
"""Stop accepting jobs while there are no engines.
Leave them in the ZMQ queue."""
self.client_stream.on_recv(None)
#-----------------------------------------------------------------------
# [Un]Registration Handling
#-----------------------------------------------------------------------
def dispatch_query_reply(self, msg):
"""handle reply to our initial connection request"""
try:
idents, msg = self.session.feed_identities(msg)
except ValueError:
self.log.warn("task::Invalid Message: %r", msg)
return
try:
msg = self.session.unserialize(msg)
except ValueError:
self.log.warn("task::Unauthorized message from: %r" % idents)
return
content = msg['content']
for uuid in list(content.get('engines', {}).values()):
self._register_engine(cast_bytes(uuid))
@util.log_errors
def dispatch_notification(self, msg):
"""dispatch register/unregister events."""
try:
idents, msg = self.session.feed_identities(msg)
except ValueError:
self.log.warn("task::Invalid Message: %r", msg)
return
try:
msg = self.session.unserialize(msg)
except ValueError:
self.log.warn("task::Unauthorized message from: %r" % idents)
return
msg_type = msg['header']['msg_type']
handler = self._notification_handlers.get(msg_type, None)
if handler is None:
self.log.error("Unhandled message type: %r" % msg_type)
else:
try:
handler(cast_bytes(msg['content']['uuid']))
except Exception:
self.log.error("task::Invalid notification msg: %r",
msg,
exc_info=True)
def _register_engine(self, uid):
"""New engine with ident `uid` became available."""
# head of the line:
self.targets.insert(0, uid)
self.loads.insert(0, 0)
# initialize sets
self.completed[uid] = set()
self.failed[uid] = set()
self.pending[uid] = {}
# rescan the graph:
self.update_graph(None)
def _unregister_engine(self, uid):
"""Existing engine with ident `uid` became unavailable."""
if len(self.targets) == 1:
# this was our only engine
pass
# handle any potentially finished tasks:
self.engine_stream.flush()
# don't pop destinations, because they might be used later
# map(self.destinations.pop, self.completed.pop(uid))
# map(self.destinations.pop, self.failed.pop(uid))
# prevent this engine from receiving work
idx = self.targets.index(uid)
self.targets.pop(idx)
self.loads.pop(idx)
# wait 5 seconds before cleaning up pending jobs, since the results might
# still be incoming
if self.pending[uid]:
dc = ioloop.DelayedCallback(
lambda: self.handle_stranded_tasks(uid), 5000, self.loop)
dc.start()
else:
self.completed.pop(uid)
self.failed.pop(uid)
def handle_stranded_tasks(self, engine):
"""Deal with jobs resident in an engine that died."""
lost = self.pending[engine]
for msg_id in list(lost.keys()):
if msg_id not in self.pending[engine]:
# prevent double-handling of messages
continue
raw_msg = lost[msg_id].raw_msg
idents, msg = self.session.feed_identities(raw_msg, copy=False)
parent = self.session.unpack(msg[1].bytes)
idents = [engine, idents[0]]
# build fake error reply
try:
raise error.EngineError(
"Engine %r died while running task %r" % (engine, msg_id))
except:
content = error.wrap_exception()
# build fake metadata
md = dict(
status='error',
engine=engine.decode('ascii'),
date=datetime.now(),
)
msg = self.session.msg('apply_reply',
content,
parent=parent,
metadata=md)
raw_reply = list(
map(zmq.Message, self.session.serialize(msg, ident=idents)))
# and dispatch it
self.dispatch_result(raw_reply)
# finally scrub completed/failed lists
self.completed.pop(engine)
self.failed.pop(engine)
#-----------------------------------------------------------------------
# Job Submission
#-----------------------------------------------------------------------
@util.log_errors
def dispatch_submission(self, raw_msg):
"""Dispatch job submission to appropriate handlers."""
# ensure targets up to date:
self.notifier_stream.flush()
try:
idents, msg = self.session.feed_identities(raw_msg, copy=False)
msg = self.session.unserialize(msg, content=False, copy=False)
except Exception:
self.log.error("task::Invaid task msg: %r" % raw_msg,
exc_info=True)
return
# send to monitor
self.mon_stream.send_multipart([b'intask'] + raw_msg, copy=False)
header = msg['header']
md = msg['metadata']
msg_id = header['msg_id']
self.all_ids.add(msg_id)
# get targets as a set of bytes objects
# from a list of unicode objects
targets = md.get('targets', [])
targets = list(map(cast_bytes, targets))
targets = set(targets)
retries = md.get('retries', 0)
self.retries[msg_id] = retries
# time dependencies
after = md.get('after', None)
if after:
after = Dependency(after)
if after.all:
if after.success:
after = Dependency(
after.difference(self.all_completed),
success=after.success,
failure=after.failure,
all=after.all,
)
if after.failure:
after = Dependency(
after.difference(self.all_failed),
success=after.success,
failure=after.failure,
all=after.all,
)
if after.check(self.all_completed, self.all_failed):
# recast as empty set, if `after` already met,
# to prevent unnecessary set comparisons
after = MET
else:
after = MET
# location dependencies
follow = Dependency(md.get('follow', []))
# turn timeouts into datetime objects:
timeout = md.get('timeout', None)
if timeout:
timeout = time.time() + float(timeout)
job = Job(
msg_id=msg_id,
raw_msg=raw_msg,
idents=idents,
msg=msg,
header=header,
targets=targets,
after=after,
follow=follow,
timeout=timeout,
metadata=md,
)
if timeout:
# schedule timeout callback
self.loop.add_timeout(timeout, lambda: self.job_timeout(job))
# validate and reduce dependencies:
for dep in after, follow:
if not dep: # empty dependency
continue
# check valid:
if msg_id in dep or dep.difference(self.all_ids):
self.queue_map[msg_id] = job
return self.fail_unreachable(msg_id, error.InvalidDependency)
# check if unreachable:
if dep.unreachable(self.all_completed, self.all_failed):
self.queue_map[msg_id] = job
return self.fail_unreachable(msg_id)
if after.check(self.all_completed, self.all_failed):
# time deps already met, try to run
if not self.maybe_run(job):
# can't run yet
if msg_id not in self.all_failed:
# could have failed as unreachable
self.save_unmet(job)
else:
self.save_unmet(job)
def job_timeout(self, job):
"""callback for a job's timeout.
The job may or may not have been run at this point.
"""
now = time.time()
if job.timeout >= (now + 1):
self.log.warn("task %s timeout fired prematurely: %s > %s",
job.msg_id, job.timeout, now)
if job.msg_id in self.queue_map:
# still waiting, but ran out of time
self.log.info("task %r timed out", job.msg_id)
self.fail_unreachable(job.msg_id, error.TaskTimeout)
def fail_unreachable(self, msg_id, why=error.ImpossibleDependency):
"""a task has become unreachable, send a reply with an ImpossibleDependency
error."""
if msg_id not in self.queue_map:
self.log.error("task %r already failed!", msg_id)
return
job = self.queue_map.pop(msg_id)
# lazy-delete from the queue
job.removed = True
for mid in job.dependents:
if mid in self.graph:
self.graph[mid].remove(msg_id)
try:
raise why()
except:
content = error.wrap_exception()
self.log.debug("task %r failing as unreachable with: %s", msg_id,
content['ename'])
self.all_done.add(msg_id)
self.all_failed.add(msg_id)
msg = self.session.send(self.client_stream,
'apply_reply',
content,
parent=job.header,
ident=job.idents)
self.session.send(self.mon_stream,
msg,
ident=[b'outtask'] + job.idents)
self.update_graph(msg_id, success=False)
def available_engines(self):
"""return a list of available engine indices based on HWM"""
if not self.hwm:
return list(range(len(self.targets)))
available = []
for idx in range(len(self.targets)):
if self.loads[idx] < self.hwm:
available.append(idx)
return available
def maybe_run(self, job):
"""check location dependencies, and run if they are met."""
msg_id = job.msg_id
self.log.debug("Attempting to assign task %s", msg_id)
available = self.available_engines()
if not available:
# no engines, definitely can't run
return False
if job.follow or job.targets or job.blacklist or self.hwm:
# we need a can_run filter
def can_run(idx):
# check hwm
if self.hwm and self.loads[idx] == self.hwm:
return False
target = self.targets[idx]
# check blacklist
if target in job.blacklist:
return False
# check targets
if job.targets and target not in job.targets:
return False
# check follow
return job.follow.check(self.completed[target],
self.failed[target])
indices = list(filter(can_run, available))
if not indices:
# couldn't run
if job.follow.all:
# check follow for impossibility
dests = set()
relevant = set()
if job.follow.success:
relevant = self.all_completed
if job.follow.failure:
relevant = relevant.union(self.all_failed)
for m in job.follow.intersection(relevant):
dests.add(self.destinations[m])
if len(dests) > 1:
self.queue_map[msg_id] = job
self.fail_unreachable(msg_id)
return False
if job.targets:
# check blacklist+targets for impossibility
job.targets.difference_update(job.blacklist)
if not job.targets or not job.targets.intersection(
self.targets):
self.queue_map[msg_id] = job
self.fail_unreachable(msg_id)
return False
return False
else:
indices = None
self.submit_task(job, indices)
return True
def save_unmet(self, job):
"""Save a message for later submission when its dependencies are met."""
msg_id = job.msg_id
self.log.debug("Adding task %s to the queue", msg_id)
self.queue_map[msg_id] = job
self.queue.append(job)
# track the ids in follow or after, but not those already finished
for dep_id in job.after.union(job.follow).difference(self.all_done):
if dep_id not in self.graph:
self.graph[dep_id] = set()
self.graph[dep_id].add(msg_id)
def submit_task(self, job, indices=None):
"""Submit a task to any of a subset of our targets."""
if indices:
loads = [self.loads[i] for i in indices]
else:
loads = self.loads
idx = self.scheme(loads)
if indices:
idx = indices[idx]
target = self.targets[idx]
# print (target, map(str, msg[:3]))
# send job to the engine
self.engine_stream.send(target, flags=zmq.SNDMORE, copy=False)
self.engine_stream.send_multipart(job.raw_msg, copy=False)
# update load
self.add_job(idx)
self.pending[target][job.msg_id] = job
# notify Hub
content = dict(msg_id=job.msg_id, engine_id=target.decode('ascii'))
self.session.send(self.mon_stream,
'task_destination',
content=content,
ident=[b'tracktask', self.ident])
#-----------------------------------------------------------------------
# Result Handling
#-----------------------------------------------------------------------
@util.log_errors
def dispatch_result(self, raw_msg):
"""dispatch method for result replies"""
try:
idents, msg = self.session.feed_identities(raw_msg, copy=False)
msg = self.session.unserialize(msg, content=False, copy=False)
engine = idents[0]
try:
idx = self.targets.index(engine)
except ValueError:
pass # skip load-update for dead engines
else:
self.finish_job(idx)
except Exception:
self.log.error("task::Invaid result: %r", raw_msg, exc_info=True)
return
md = msg['metadata']
parent = msg['parent_header']
if md.get('dependencies_met', True):
success = (md['status'] == 'ok')
msg_id = parent['msg_id']
retries = self.retries[msg_id]
if not success and retries > 0:
# failed
self.retries[msg_id] = retries - 1
self.handle_unmet_dependency(idents, parent)
else:
del self.retries[msg_id]
# relay to client and update graph
self.handle_result(idents, parent, raw_msg, success)
# send to Hub monitor
self.mon_stream.send_multipart([b'outtask'] + raw_msg,
copy=False)
else:
self.handle_unmet_dependency(idents, parent)
def handle_result(self, idents, parent, raw_msg, success=True):
"""handle a real task result, either success or failure"""
# first, relay result to client
engine = idents[0]
client = idents[1]
# swap_ids for ROUTER-ROUTER mirror
raw_msg[:2] = [client, engine]
# print (map(str, raw_msg[:4]))
self.client_stream.send_multipart(raw_msg, copy=False)
# now, update our data structures
msg_id = parent['msg_id']
self.pending[engine].pop(msg_id)
if success:
self.completed[engine].add(msg_id)
self.all_completed.add(msg_id)
else:
self.failed[engine].add(msg_id)
self.all_failed.add(msg_id)
self.all_done.add(msg_id)
self.destinations[msg_id] = engine
self.update_graph(msg_id, success)
def handle_unmet_dependency(self, idents, parent):
"""handle an unmet dependency"""
engine = idents[0]
msg_id = parent['msg_id']
job = self.pending[engine].pop(msg_id)
job.blacklist.add(engine)
if job.blacklist == job.targets:
self.queue_map[msg_id] = job
self.fail_unreachable(msg_id)
elif not self.maybe_run(job):
# resubmit failed
if msg_id not in self.all_failed:
# put it back in our dependency tree
self.save_unmet(job)
if self.hwm:
try:
idx = self.targets.index(engine)
except ValueError:
pass # skip load-update for dead engines
else:
if self.loads[idx] == self.hwm - 1:
self.update_graph(None)
def update_graph(self, dep_id=None, success=True):
"""dep_id just finished. Update our dependency
graph and submit any jobs that just became runnable.
Called with dep_id=None to update entire graph for hwm, but without finishing a task.
"""
# print ("\n\n***********")
# pprint (dep_id)
# pprint (self.graph)
# pprint (self.queue_map)
# pprint (self.all_completed)
# pprint (self.all_failed)
# print ("\n\n***********\n\n")
# update any jobs that depended on the dependency
msg_ids = self.graph.pop(dep_id, [])
# recheck *all* jobs if
# a) we have HWM and an engine just become no longer full
# or b) dep_id was given as None
if dep_id is None or self.hwm and any(
[load == self.hwm - 1 for load in self.loads]):
jobs = self.queue
using_queue = True
else:
using_queue = False
jobs = deque(sorted(self.queue_map[msg_id] for msg_id in msg_ids))
to_restore = []
while jobs:
job = jobs.popleft()
if job.removed:
continue
msg_id = job.msg_id
put_it_back = True
if job.after.unreachable(self.all_completed, self.all_failed)\
or job.follow.unreachable(self.all_completed, self.all_failed):
self.fail_unreachable(msg_id)
put_it_back = False
elif job.after.check(self.all_completed,
self.all_failed): # time deps met, maybe run
if self.maybe_run(job):
put_it_back = False
self.queue_map.pop(msg_id)
for mid in job.dependents:
if mid in self.graph:
self.graph[mid].remove(msg_id)
# abort the loop if we just filled up all of our engines.
# avoids an O(N) operation in situation of full queue,
# where graph update is triggered as soon as an engine becomes
# non-full, and all tasks after the first are checked,
# even though they can't run.
if not self.available_engines():
break
if using_queue and put_it_back:
# popped a job from the queue but it neither ran nor failed,
# so we need to put it back when we are done
# make sure to_restore preserves the same ordering
to_restore.append(job)
# put back any tasks we popped but didn't run
if using_queue:
self.queue.extendleft(to_restore)
#----------------------------------------------------------------------
# methods to be overridden by subclasses
#----------------------------------------------------------------------
def add_job(self, idx):
"""Called after self.targets[idx] just got the job with header.
Override with subclasses. The default ordering is simple LRU.
The default loads are the number of outstanding jobs."""
self.loads[idx] += 1
for lis in (self.targets, self.loads):
lis.append(lis.pop(idx))
def finish_job(self, idx):
"""Called after self.targets[idx] just finished a job.
Override with subclasses."""
self.loads[idx] -= 1
class IntegerTrait(HasTraits):
value = Integer(1)
class ConnectionFileMixin(Configurable):
"""Mixin for configurable classes that work with connection files"""
# The addresses for the communication channels
connection_file = Unicode('')
_connection_file_written = Bool(False)
transport = CaselessStrEnum(['tcp', 'ipc'],
default_value='tcp',
config=True)
ip = Unicode(LOCALHOST,
config=True,
help="""Set the kernel\'s IP address [default localhost].
If the IP address is something other than localhost, then
Consoles on other machines will be able to connect
to the Kernel, so be careful!""")
def _ip_default(self):
if self.transport == 'ipc':
if self.connection_file:
return os.path.splitext(self.connection_file)[0] + '-ipc'
else:
return 'kernel-ipc'
else:
return LOCALHOST
def _ip_changed(self, name, old, new):
if new == '*':
self.ip = '0.0.0.0'
# protected traits
shell_port = Integer(0)
iopub_port = Integer(0)
stdin_port = Integer(0)
control_port = Integer(0)
hb_port = Integer(0)
@property
def ports(self):
return [getattr(self, name) for name in port_names]
#--------------------------------------------------------------------------
# Connection and ipc file management
#--------------------------------------------------------------------------
def get_connection_info(self):
"""return the connection info as a dict"""
return dict(
transport=self.transport,
ip=self.ip,
shell_port=self.shell_port,
iopub_port=self.iopub_port,
stdin_port=self.stdin_port,
hb_port=self.hb_port,
control_port=self.control_port,
signature_scheme=self.session.signature_scheme,
key=self.session.key,
)
def cleanup_connection_file(self):
"""Cleanup connection file *if we wrote it*
Will not raise if the connection file was already removed somehow.
"""
if self._connection_file_written:
# cleanup connection files on full shutdown of kernel we started
self._connection_file_written = False
try:
os.remove(self.connection_file)
except (IOError, OSError, AttributeError):
pass
def cleanup_ipc_files(self):
"""Cleanup ipc files if we wrote them."""
if self.transport != 'ipc':
return
for port in self.ports:
ipcfile = "%s-%i" % (self.ip, port)
try:
os.remove(ipcfile)
except (IOError, OSError):
pass
def write_connection_file(self):
"""Write connection info to JSON dict in self.connection_file."""
if self._connection_file_written:
return
self.connection_file, cfg = write_connection_file(
self.connection_file,
transport=self.transport,
ip=self.ip,
key=self.session.key,
stdin_port=self.stdin_port,
iopub_port=self.iopub_port,
shell_port=self.shell_port,
hb_port=self.hb_port,
control_port=self.control_port,
signature_scheme=self.session.signature_scheme,
)
# write_connection_file also sets default ports:
for name in port_names:
setattr(self, name, cfg[name])
self._connection_file_written = True
def load_connection_file(self):
"""Load connection info from JSON dict in self.connection_file."""
with open(self.connection_file) as f:
cfg = json.loads(f.read())
self.transport = cfg.get('transport', 'tcp')
self.ip = cfg['ip']
for name in port_names:
setattr(self, name, cfg[name])
if 'key' in cfg:
self.session.key = str_to_bytes(cfg['key'])
if cfg.get('signature_scheme'):
self.session.signature_scheme = cfg['signature_scheme']
#--------------------------------------------------------------------------
# Creating connected sockets
#--------------------------------------------------------------------------
def _make_url(self, channel):
"""Make a ZeroMQ URL for a given channel."""
transport = self.transport
ip = self.ip
port = getattr(self, '%s_port' % channel)
if transport == 'tcp':
return "tcp://%s:%i" % (ip, port)
else:
return "%s://%s-%s" % (transport, ip, port)
def _create_connected_socket(self, channel, identity=None):
"""Create a zmq Socket and connect it to the kernel."""
url = self._make_url(channel)
socket_type = channel_socket_types[channel]
self.log.info("Connecting to: %s" % url)
sock = self.context.socket(socket_type)
if identity:
sock.identity = identity
sock.connect(url)
return sock
def connect_iopub(self, identity=None):
"""return zmq Socket connected to the IOPub channel"""
sock = self._create_connected_socket('iopub', identity=identity)
sock.setsockopt(zmq.SUBSCRIBE, b'')
return sock
def connect_shell(self, identity=None):
"""return zmq Socket connected to the Shell channel"""
return self._create_connected_socket('shell', identity=identity)
def connect_stdin(self, identity=None):
"""return zmq Socket connected to the StdIn channel"""
return self._create_connected_socket('stdin', identity=identity)
def connect_hb(self, identity=None):
"""return zmq Socket connected to the Heartbeat channel"""
return self._create_connected_socket('hb', identity=identity)
def connect_control(self, identity=None):
"""return zmq Socket connected to the Heartbeat channel"""
return self._create_connected_socket('control', identity=identity)
class Kernel(Configurable):
#---------------------------------------------------------------------------
# Kernel interface
#---------------------------------------------------------------------------
# attribute to override with a GUI
eventloop = Any(None)
def _eventloop_changed(self, name, old, new):
"""schedule call to eventloop from IOLoop"""
loop = ioloop.IOLoop.instance()
loop.add_timeout(time.time() + 0.1, self.enter_eventloop)
shell = Instance('IPython.core.interactiveshell.InteractiveShellABC')
shell_class = Type(ZMQInteractiveShell)
session = Instance(Session)
profile_dir = Instance('IPython.core.profiledir.ProfileDir')
shell_streams = List()
control_stream = Instance(ZMQStream)
iopub_socket = Instance(zmq.Socket)
stdin_socket = Instance(zmq.Socket)
log = Instance(logging.Logger)
user_module = Any()
def _user_module_changed(self, name, old, new):
if self.shell is not None:
self.shell.user_module = new
user_ns = Instance(dict, args=None, allow_none=True)
def _user_ns_changed(self, name, old, new):
if self.shell is not None:
self.shell.user_ns = new
self.shell.init_user_ns()
# identities:
int_id = Integer(-1)
ident = Unicode()
def _ident_default(self):
return unicode_type(uuid.uuid4())
# Private interface
# Time to sleep after flushing the stdout/err buffers in each execute
# cycle. While this introduces a hard limit on the minimal latency of the
# execute cycle, it helps prevent output synchronization problems for
# clients.
# Units are in seconds. The minimum zmq latency on local host is probably
# ~150 microseconds, set this to 500us for now. We may need to increase it
# a little if it's not enough after more interactive testing.
_execute_sleep = Float(0.0005, config=True)
# Frequency of the kernel's event loop.
# Units are in seconds, kernel subclasses for GUI toolkits may need to
# adapt to milliseconds.
_poll_interval = Float(0.05, config=True)
# If the shutdown was requested over the network, we leave here the
# necessary reply message so it can be sent by our registered atexit
# handler. This ensures that the reply is only sent to clients truly at
# the end of our shutdown process (which happens after the underlying
# IPython shell's own shutdown).
_shutdown_message = None
# This is a dict of port number that the kernel is listening on. It is set
# by record_ports and used by connect_request.
_recorded_ports = Dict()
# A reference to the Python builtin 'raw_input' function.
# (i.e., __builtin__.raw_input for Python 2.7, builtins.input for Python 3)
_sys_raw_input = Any()
_sys_eval_input = Any()
# set of aborted msg_ids
aborted = Set()
def __init__(self, **kwargs):
super(Kernel, self).__init__(**kwargs)
# Initialize the InteractiveShell subclass
self.shell = self.shell_class.instance(
parent=self,
profile_dir=self.profile_dir,
user_module=self.user_module,
user_ns=self.user_ns,
kernel=self,
)
self.shell.displayhook.session = self.session
self.shell.displayhook.pub_socket = self.iopub_socket
self.shell.displayhook.topic = self._topic('pyout')
self.shell.display_pub.session = self.session
self.shell.display_pub.pub_socket = self.iopub_socket
self.shell.data_pub.session = self.session
self.shell.data_pub.pub_socket = self.iopub_socket
# TMP - hack while developing
self.shell._reply_content = None
# Build dict of handlers for message types
msg_types = [
'execute_request',
'complete_request',
'object_info_request',
'history_request',
'kernel_info_request',
'connect_request',
'shutdown_request',
'apply_request',
]
self.shell_handlers = {}
for msg_type in msg_types:
self.shell_handlers[msg_type] = getattr(self, msg_type)
comm_msg_types = ['comm_open', 'comm_msg', 'comm_close']
comm_manager = self.shell.comm_manager
for msg_type in comm_msg_types:
self.shell_handlers[msg_type] = getattr(comm_manager, msg_type)
control_msg_types = msg_types + ['clear_request', 'abort_request']
self.control_handlers = {}
for msg_type in control_msg_types:
self.control_handlers[msg_type] = getattr(self, msg_type)
def dispatch_control(self, msg):
"""dispatch control requests"""
idents, msg = self.session.feed_identities(msg, copy=False)
try:
msg = self.session.unserialize(msg, content=True, copy=False)
except:
self.log.error("Invalid Control Message", exc_info=True)
return
self.log.debug("Control received: %s", msg)
header = msg['header']
msg_id = header['msg_id']
msg_type = header['msg_type']
handler = self.control_handlers.get(msg_type, None)
if handler is None:
self.log.error("UNKNOWN CONTROL MESSAGE TYPE: %r", msg_type)
else:
try:
handler(self.control_stream, idents, msg)
except Exception:
self.log.error("Exception in control handler:", exc_info=True)
def dispatch_shell(self, stream, msg):
"""dispatch shell requests"""
# flush control requests first
if self.control_stream:
self.control_stream.flush()
idents, msg = self.session.feed_identities(msg, copy=False)
try:
msg = self.session.unserialize(msg, content=True, copy=False)
except:
self.log.error("Invalid Message", exc_info=True)
return
header = msg['header']
msg_id = header['msg_id']
msg_type = msg['header']['msg_type']
# Print some info about this message and leave a '--->' marker, so it's
# easier to trace visually the message chain when debugging. Each
# handler prints its message at the end.
self.log.debug('\n*** MESSAGE TYPE:%s***', msg_type)
self.log.debug(' Content: %s\n --->\n ', msg['content'])
if msg_id in self.aborted:
self.aborted.remove(msg_id)
# is it safe to assume a msg_id will not be resubmitted?
reply_type = msg_type.split('_')[0] + '_reply'
status = {'status': 'aborted'}
md = {'engine': self.ident}
md.update(status)
reply_msg = self.session.send(stream,
reply_type,
metadata=md,
content=status,
parent=msg,
ident=idents)
return
handler = self.shell_handlers.get(msg_type, None)
if handler is None:
self.log.error("UNKNOWN MESSAGE TYPE: %r", msg_type)
else:
# ensure default_int_handler during handler call
sig = signal(SIGINT, default_int_handler)
try:
handler(stream, idents, msg)
except Exception:
self.log.error("Exception in message handler:", exc_info=True)
finally:
signal(SIGINT, sig)
def enter_eventloop(self):
"""enter eventloop"""
self.log.info("entering eventloop")
# restore default_int_handler
signal(SIGINT, default_int_handler)
while self.eventloop is not None:
try:
self.eventloop(self)
except KeyboardInterrupt:
# Ctrl-C shouldn't crash the kernel
self.log.error("KeyboardInterrupt caught in kernel")
continue
else:
# eventloop exited cleanly, this means we should stop (right?)
self.eventloop = None
break
self.log.info("exiting eventloop")
def start(self):
"""register dispatchers for streams"""
self.shell.exit_now = False
if self.control_stream:
self.control_stream.on_recv(self.dispatch_control, copy=False)
def make_dispatcher(stream):
def dispatcher(msg):
return self.dispatch_shell(stream, msg)
return dispatcher
for s in self.shell_streams:
s.on_recv(make_dispatcher(s), copy=False)
# publish idle status
self._publish_status('starting')
def do_one_iteration(self):
"""step eventloop just once"""
if self.control_stream:
self.control_stream.flush()
for stream in self.shell_streams:
# handle at most one request per iteration
stream.flush(zmq.POLLIN, 1)
stream.flush(zmq.POLLOUT)
def record_ports(self, ports):
"""Record the ports that this kernel is using.
The creator of the Kernel instance must call this methods if they
want the :meth:`connect_request` method to return the port numbers.
"""
self._recorded_ports = ports
#---------------------------------------------------------------------------
# Kernel request handlers
#---------------------------------------------------------------------------
def _make_metadata(self, other=None):
"""init metadata dict, for execute/apply_reply"""
new_md = {
'dependencies_met': True,
'engine': self.ident,
'started': datetime.now(),
}
if other:
new_md.update(other)
return new_md
def _publish_pyin(self, code, parent, execution_count):
"""Publish the code request on the pyin stream."""
self.session.send(self.iopub_socket,
u'pyin', {
u'code': code,
u'execution_count': execution_count
},
parent=parent,
ident=self._topic('pyin'))
def _publish_status(self, status, parent=None):
"""send status (busy/idle) on IOPub"""
self.session.send(
self.iopub_socket,
u'status',
{u'execution_state': status},
parent=parent,
ident=self._topic('status'),
)
def execute_request(self, stream, ident, parent):
"""handle an execute_request"""
self._publish_status(u'busy', parent)
try:
content = parent[u'content']
code = content[u'code']
silent = content[u'silent']
store_history = content.get(u'store_history', not silent)
except:
self.log.error("Got bad msg: ")
self.log.error("%s", parent)
return
md = self._make_metadata(parent['metadata'])
shell = self.shell # we'll need this a lot here
# Replace raw_input. Note that is not sufficient to replace
# raw_input in the user namespace.
if content.get('allow_stdin', False):
raw_input = lambda prompt='': self._raw_input(
prompt, ident, parent)
input = lambda prompt='': eval(raw_input(prompt))
else:
raw_input = input = lambda prompt='': self._no_raw_input()
if py3compat.PY3:
self._sys_raw_input = builtin_mod.input
builtin_mod.input = raw_input
else:
self._sys_raw_input = builtin_mod.raw_input
self._sys_eval_input = builtin_mod.input
builtin_mod.raw_input = raw_input
builtin_mod.input = input
# Set the parent message of the display hook and out streams.
shell.set_parent(parent)
# Re-broadcast our input for the benefit of listening clients, and
# start computing output
if not silent:
self._publish_pyin(code, parent, shell.execution_count)
reply_content = {}
try:
# FIXME: the shell calls the exception handler itself.
shell.run_cell(code, store_history=store_history, silent=silent)
except:
status = u'error'
# FIXME: this code right now isn't being used yet by default,
# because the run_cell() call above directly fires off exception
# reporting. This code, therefore, is only active in the scenario
# where runlines itself has an unhandled exception. We need to
# uniformize this, for all exception construction to come from a
# single location in the codbase.
etype, evalue, tb = sys.exc_info()
tb_list = traceback.format_exception(etype, evalue, tb)
reply_content.update(shell._showtraceback(etype, evalue, tb_list))
else:
status = u'ok'
finally:
# Restore raw_input.
if py3compat.PY3:
builtin_mod.input = self._sys_raw_input
else:
builtin_mod.raw_input = self._sys_raw_input
builtin_mod.input = self._sys_eval_input
reply_content[u'status'] = status
# Return the execution counter so clients can display prompts
reply_content['execution_count'] = shell.execution_count - 1
# FIXME - fish exception info out of shell, possibly left there by
# runlines. We'll need to clean up this logic later.
if shell._reply_content is not None:
reply_content.update(shell._reply_content)
e_info = dict(engine_uuid=self.ident,
engine_id=self.int_id,
method='execute')
reply_content['engine_info'] = e_info
# reset after use
shell._reply_content = None
if 'traceback' in reply_content:
self.log.info("Exception in execute request:\n%s",
'\n'.join(reply_content['traceback']))
# At this point, we can tell whether the main code execution succeeded
# or not. If it did, we proceed to evaluate user_variables/expressions
if reply_content['status'] == 'ok':
reply_content[u'user_variables'] = \
shell.user_variables(content.get(u'user_variables', []))
reply_content[u'user_expressions'] = \
shell.user_expressions(content.get(u'user_expressions', {}))
else:
# If there was an error, don't even try to compute variables or
# expressions
reply_content[u'user_variables'] = {}
reply_content[u'user_expressions'] = {}
# Payloads should be retrieved regardless of outcome, so we can both
# recover partial output (that could have been generated early in a
# block, before an error) and clear the payload system always.
reply_content[u'payload'] = shell.payload_manager.read_payload()
# Be agressive about clearing the payload because we don't want
# it to sit in memory until the next execute_request comes in.
shell.payload_manager.clear_payload()
# Flush output before sending the reply.
sys.stdout.flush()
sys.stderr.flush()
# FIXME: on rare occasions, the flush doesn't seem to make it to the
# clients... This seems to mitigate the problem, but we definitely need
# to better understand what's going on.
if self._execute_sleep:
time.sleep(self._execute_sleep)
# Send the reply.
reply_content = json_clean(reply_content)
md['status'] = reply_content['status']
if reply_content['status'] == 'error' and \
reply_content['ename'] == 'UnmetDependency':
md['dependencies_met'] = False
reply_msg = self.session.send(stream,
u'execute_reply',
reply_content,
parent,
metadata=md,
ident=ident)
self.log.debug("%s", reply_msg)
if not silent and reply_msg['content']['status'] == u'error':
self._abort_queues()
self._publish_status(u'idle', parent)
def complete_request(self, stream, ident, parent):
txt, matches = self._complete(parent)
matches = {'matches': matches, 'matched_text': txt, 'status': 'ok'}
matches = json_clean(matches)
completion_msg = self.session.send(stream, 'complete_reply', matches,
parent, ident)
self.log.debug("%s", completion_msg)
def object_info_request(self, stream, ident, parent):
content = parent['content']
object_info = self.shell.object_inspect(content['oname'],
detail_level=content.get(
'detail_level', 0))
# Before we send this object over, we scrub it for JSON usage
oinfo = json_clean(object_info)
msg = self.session.send(stream, 'object_info_reply', oinfo, parent,
ident)
self.log.debug("%s", msg)
def history_request(self, stream, ident, parent):
# We need to pull these out, as passing **kwargs doesn't work with
# unicode keys before Python 2.6.5.
hist_access_type = parent['content']['hist_access_type']
raw = parent['content']['raw']
output = parent['content']['output']
if hist_access_type == 'tail':
n = parent['content']['n']
hist = self.shell.history_manager.get_tail(n,
raw=raw,
output=output,
include_latest=True)
elif hist_access_type == 'range':
session = parent['content']['session']
start = parent['content']['start']
stop = parent['content']['stop']
hist = self.shell.history_manager.get_range(session,
start,
stop,
raw=raw,
output=output)
elif hist_access_type == 'search':
n = parent['content'].get('n')
unique = parent['content'].get('unique', False)
pattern = parent['content']['pattern']
hist = self.shell.history_manager.search(pattern,
raw=raw,
output=output,
n=n,
unique=unique)
else:
hist = []
hist = list(hist)
content = {'history': hist}
content = json_clean(content)
msg = self.session.send(stream, 'history_reply', content, parent,
ident)
self.log.debug("Sending history reply with %i entries", len(hist))
def connect_request(self, stream, ident, parent):
if self._recorded_ports is not None:
content = self._recorded_ports.copy()
else:
content = {}
msg = self.session.send(stream, 'connect_reply', content, parent,
ident)
self.log.debug("%s", msg)
def kernel_info_request(self, stream, ident, parent):
vinfo = {
'protocol_version': protocol_version,
'ipython_version': ipython_version,
'language_version': language_version,
'language': 'python',
}
msg = self.session.send(stream, 'kernel_info_reply', vinfo, parent,
ident)
self.log.debug("%s", msg)
def shutdown_request(self, stream, ident, parent):
self.shell.exit_now = True
content = dict(status='ok')
content.update(parent['content'])
self.session.send(stream,
u'shutdown_reply',
content,
parent,
ident=ident)
# same content, but different msg_id for broadcasting on IOPub
self._shutdown_message = self.session.msg(u'shutdown_reply', content,
parent)
self._at_shutdown()
# call sys.exit after a short delay
loop = ioloop.IOLoop.instance()
loop.add_timeout(time.time() + 0.1, loop.stop)
#---------------------------------------------------------------------------
# Engine methods
#---------------------------------------------------------------------------
def apply_request(self, stream, ident, parent):
try:
content = parent[u'content']
bufs = parent[u'buffers']
msg_id = parent['header']['msg_id']
except:
self.log.error("Got bad msg: %s", parent, exc_info=True)
return
self._publish_status(u'busy', parent)
# Set the parent message of the display hook and out streams.
shell = self.shell
shell.set_parent(parent)
# pyin_msg = self.session.msg(u'pyin',{u'code':code}, parent=parent)
# self.iopub_socket.send(pyin_msg)
# self.session.send(self.iopub_socket, u'pyin', {u'code':code},parent=parent)
md = self._make_metadata(parent['metadata'])
try:
working = shell.user_ns
prefix = "_" + str(msg_id).replace("-", "") + "_"
f, args, kwargs = unpack_apply_message(bufs, working, copy=False)
fname = getattr(f, '__name__', 'f')
fname = prefix + "f"
argname = prefix + "args"
kwargname = prefix + "kwargs"
resultname = prefix + "result"
ns = {fname: f, argname: args, kwargname: kwargs, resultname: None}
# print ns
working.update(ns)
code = "%s = %s(*%s,**%s)" % (resultname, fname, argname,
kwargname)
try:
exec(code, shell.user_global_ns, shell.user_ns)
result = working.get(resultname)
finally:
for key in ns:
working.pop(key)
result_buf = serialize_object(
result,
buffer_threshold=self.session.buffer_threshold,
item_threshold=self.session.item_threshold,
)
except:
# invoke IPython traceback formatting
shell.showtraceback()
# FIXME - fish exception info out of shell, possibly left there by
# run_code. We'll need to clean up this logic later.
reply_content = {}
if shell._reply_content is not None:
reply_content.update(shell._reply_content)
e_info = dict(engine_uuid=self.ident,
engine_id=self.int_id,
method='apply')
reply_content['engine_info'] = e_info
# reset after use
shell._reply_content = None
self.session.send(self.iopub_socket,
u'pyerr',
reply_content,
parent=parent,
ident=self._topic('pyerr'))
self.log.info("Exception in apply request:\n%s",
'\n'.join(reply_content['traceback']))
result_buf = []
if reply_content['ename'] == 'UnmetDependency':
md['dependencies_met'] = False
else:
reply_content = {'status': 'ok'}
# put 'ok'/'error' status in header, for scheduler introspection:
md['status'] = reply_content['status']
# flush i/o
sys.stdout.flush()
sys.stderr.flush()
reply_msg = self.session.send(stream,
u'apply_reply',
reply_content,
parent=parent,
ident=ident,
buffers=result_buf,
metadata=md)
self._publish_status(u'idle', parent)
#---------------------------------------------------------------------------
# Control messages
#---------------------------------------------------------------------------
def abort_request(self, stream, ident, parent):
"""abort a specifig msg by id"""
msg_ids = parent['content'].get('msg_ids', None)
if isinstance(msg_ids, string_types):
msg_ids = [msg_ids]
if not msg_ids:
self.abort_queues()
for mid in msg_ids:
self.aborted.add(str(mid))
content = dict(status='ok')
reply_msg = self.session.send(stream,
'abort_reply',
content=content,
parent=parent,
ident=ident)
self.log.debug("%s", reply_msg)
def clear_request(self, stream, idents, parent):
"""Clear our namespace."""
self.shell.reset(False)
msg = self.session.send(stream,
'clear_reply',
ident=idents,
parent=parent,
content=dict(status='ok'))
#---------------------------------------------------------------------------
# Protected interface
#---------------------------------------------------------------------------
def _wrap_exception(self, method=None):
# import here, because _wrap_exception is only used in parallel,
# and parallel has higher min pyzmq version
from IPython.parallel.error import wrap_exception
e_info = dict(engine_uuid=self.ident,
engine_id=self.int_id,
method=method)
content = wrap_exception(e_info)
return content
def _topic(self, topic):
"""prefixed topic for IOPub messages"""
if self.int_id >= 0:
base = "engine.%i" % self.int_id
else:
base = "kernel.%s" % self.ident
return py3compat.cast_bytes("%s.%s" % (base, topic))
def _abort_queues(self):
for stream in self.shell_streams:
if stream:
self._abort_queue(stream)
def _abort_queue(self, stream):
poller = zmq.Poller()
poller.register(stream.socket, zmq.POLLIN)
while True:
idents, msg = self.session.recv(stream, zmq.NOBLOCK, content=True)
if msg is None:
return
self.log.info("Aborting:")
self.log.info("%s", msg)
msg_type = msg['header']['msg_type']
reply_type = msg_type.split('_')[0] + '_reply'
status = {'status': 'aborted'}
md = {'engine': self.ident}
md.update(status)
reply_msg = self.session.send(stream,
reply_type,
metadata=md,
content=status,
parent=msg,
ident=idents)
self.log.debug("%s", reply_msg)
# We need to wait a bit for requests to come in. This can probably
# be set shorter for true asynchronous clients.
poller.poll(50)
def _no_raw_input(self):
"""Raise StdinNotImplentedError if active frontend doesn't support
stdin."""
raise StdinNotImplementedError("raw_input was called, but this "
"frontend does not support stdin.")
def _raw_input(self, prompt, ident, parent):
# Flush output before making the request.
sys.stderr.flush()
sys.stdout.flush()
# flush the stdin socket, to purge stale replies
while True:
try:
self.stdin_socket.recv_multipart(zmq.NOBLOCK)
except zmq.ZMQError as e:
if e.errno == zmq.EAGAIN:
break
else:
raise
# Send the input request.
content = json_clean(dict(prompt=prompt))
self.session.send(self.stdin_socket,
u'input_request',
content,
parent,
ident=ident)
# Await a response.
while True:
try:
ident, reply = self.session.recv(self.stdin_socket, 0)
except Exception:
self.log.warn("Invalid Message:", exc_info=True)
except KeyboardInterrupt:
# re-raise KeyboardInterrupt, to truncate traceback
raise KeyboardInterrupt
else:
break
try:
value = py3compat.unicode_to_str(reply['content']['value'])
except:
self.log.error("Got bad raw_input reply: ")
self.log.error("%s", parent)
value = ''
if value == '\x04':
# EOF
raise EOFError
return value
def _complete(self, msg):
c = msg['content']
try:
cpos = int(c['cursor_pos'])
except:
# If we don't get something that we can convert to an integer, at
# least attempt the completion guessing the cursor is at the end of
# the text, if there's any, and otherwise of the line
cpos = len(c['text'])
if cpos == 0:
cpos = len(c['line'])
return self.shell.complete(c['text'], c['line'], cpos)
def _at_shutdown(self):
"""Actions taken at shutdown by the kernel, called by python's atexit.
"""
# io.rprint("Kernel at_shutdown") # dbg
if self._shutdown_message is not None:
self.session.send(self.iopub_socket,
self._shutdown_message,
ident=self._topic('shutdown'))
self.log.debug("%s", self._shutdown_message)
[s.flush(zmq.POLLOUT) for s in self.shell_streams]
class PlainTextFormatter(BaseFormatter):
"""The default pretty-printer.
This uses :mod:`IPython.lib.pretty` to compute the format data of
the object. If the object cannot be pretty printed, :func:`repr` is used.
See the documentation of :mod:`IPython.lib.pretty` for details on
how to write pretty printers. Here is a simple example::
def dtype_pprinter(obj, p, cycle):
if cycle:
return p.text('dtype(...)')
if hasattr(obj, 'fields'):
if obj.fields is None:
p.text(repr(obj))
else:
p.begin_group(7, 'dtype([')
for i, field in enumerate(obj.descr):
if i > 0:
p.text(',')
p.breakable()
p.pretty(field)
p.end_group(7, '])')
"""
# The format type of data returned.
format_type = Unicode('text/plain')
# This subclass ignores this attribute as it always need to return
# something.
enabled = Bool(True, config=False)
# Look for a _repr_pretty_ methods to use for pretty printing.
print_method = ObjectName('_repr_pretty_')
# Whether to pretty-print or not.
pprint = Bool(True, config=True)
# Whether to be verbose or not.
verbose = Bool(False, config=True)
# The maximum width.
max_width = Integer(79, config=True)
# The newline character.
newline = Unicode('\n', config=True)
# format-string for pprinting floats
float_format = Unicode('%r')
# setter for float precision, either int or direct format-string
float_precision = CUnicode('', config=True)
def _float_precision_changed(self, name, old, new):
"""float_precision changed, set float_format accordingly.
float_precision can be set by int or str.
This will set float_format, after interpreting input.
If numpy has been imported, numpy print precision will also be set.
integer `n` sets format to '%.nf', otherwise, format set directly.
An empty string returns to defaults (repr for float, 8 for numpy).
This parameter can be set via the '%precision' magic.
"""
if '%' in new:
# got explicit format string
fmt = new
try:
fmt % 3.14159
except Exception:
raise ValueError(
"Precision must be int or format string, not %r" % new)
elif new:
# otherwise, should be an int
try:
i = int(new)
assert i >= 0
except ValueError:
raise ValueError(
"Precision must be int or format string, not %r" % new)
except AssertionError:
raise ValueError("int precision must be non-negative, not %r" %
i)
fmt = '%%.%if' % i
if 'numpy' in sys.modules:
# set numpy precision if it has been imported
import numpy
numpy.set_printoptions(precision=i)
else:
# default back to repr
fmt = '%r'
if 'numpy' in sys.modules:
import numpy
# numpy default is 8
numpy.set_printoptions(precision=8)
self.float_format = fmt
# Use the default pretty printers from IPython.lib.pretty.
def _singleton_printers_default(self):
return pretty._singleton_pprinters.copy()
def _type_printers_default(self):
d = pretty._type_pprinters.copy()
d[float] = lambda obj, p, cycle: p.text(self.float_format % obj)
return d
def _deferred_printers_default(self):
return pretty._deferred_type_pprinters.copy()
#### FormatterABC interface ####
@warn_format_error
def __call__(self, obj):
"""Compute the pretty representation of the object."""
if not self.pprint:
return pretty._safe_repr(obj)
else:
# This uses use StringIO, as cStringIO doesn't handle unicode.
stream = StringIO()
# self.newline.encode() is a quick fix for issue gh-597. We need to
# ensure that stream does not get a mix of unicode and bytestrings,
# or it will cause trouble.
printer = pretty.RepresentationPrinter(
stream,
self.verbose,
self.max_width,
unicode_to_str(self.newline),
singleton_pprinters=self.singleton_printers,
type_pprinters=self.type_printers,
deferred_pprinters=self.deferred_printers)
printer.pretty(obj)
printer.flush()
return stream.getvalue()
class ConnectionFileMixin(LoggingConfigurable):
"""Mixin for configurable classes that work with connection files"""
# The addresses for the communication channels
connection_file = Unicode(
'',
config=True,
help=
"""JSON file in which to store connection info [default: kernel-<pid>.json]
This file will contain the IP, ports, and authentication key needed to connect
clients to this kernel. By default, this file will be created in the security dir
of the current profile, but can be specified by absolute path.
""")
_connection_file_written = Bool(False)
transport = CaselessStrEnum(['tcp', 'ipc'],
default_value='tcp',
config=True)
ip = Unicode(config=True,
help="""Set the kernel\'s IP address [default localhost].
If the IP address is something other than localhost, then
Consoles on other machines will be able to connect
to the Kernel, so be careful!""")
def _ip_default(self):
if self.transport == 'ipc':
if self.connection_file:
return os.path.splitext(self.connection_file)[0] + '-ipc'
else:
return 'kernel-ipc'
else:
return localhost()
def _ip_changed(self, name, old, new):
if new == '*':
self.ip = '0.0.0.0'
# protected traits
hb_port = Integer(0,
config=True,
help="set the heartbeat port [default: random]")
shell_port = Integer(0,
config=True,
help="set the shell (ROUTER) port [default: random]")
iopub_port = Integer(0,
config=True,
help="set the iopub (PUB) port [default: random]")
stdin_port = Integer(0,
config=True,
help="set the stdin (ROUTER) port [default: random]")
control_port = Integer(
0, config=True, help="set the control (ROUTER) port [default: random]")
@property
def ports(self):
return [getattr(self, name) for name in port_names]
# The Session to use for communication with the kernel.
session = Instance('jupyter_client.session.Session')
def _session_default(self):
from jupyter_client.session import Session
return Session(parent=self)
#--------------------------------------------------------------------------
# Connection and ipc file management
#--------------------------------------------------------------------------
def get_connection_info(self):
"""return the connection info as a dict"""
return dict(
transport=self.transport,
ip=self.ip,
shell_port=self.shell_port,
iopub_port=self.iopub_port,
stdin_port=self.stdin_port,
hb_port=self.hb_port,
control_port=self.control_port,
signature_scheme=self.session.signature_scheme,
key=self.session.key,
)
def cleanup_connection_file(self):
"""Cleanup connection file *if we wrote it*
Will not raise if the connection file was already removed somehow.
"""
if self._connection_file_written:
# cleanup connection files on full shutdown of kernel we started
self._connection_file_written = False
try:
os.remove(self.connection_file)
except (IOError, OSError, AttributeError):
pass
def cleanup_ipc_files(self):
"""Cleanup ipc files if we wrote them."""
if self.transport != 'ipc':
return
for port in self.ports:
ipcfile = "%s-%i" % (self.ip, port)
try:
os.remove(ipcfile)
except (IOError, OSError):
pass
def write_connection_file(self):
"""Write connection info to JSON dict in self.connection_file."""
if self._connection_file_written and os.path.exists(
self.connection_file):
return
self.connection_file, cfg = write_connection_file(
self.connection_file,
transport=self.transport,
ip=self.ip,
key=self.session.key,
stdin_port=self.stdin_port,
iopub_port=self.iopub_port,
shell_port=self.shell_port,
hb_port=self.hb_port,
control_port=self.control_port,
signature_scheme=self.session.signature_scheme,
)
# write_connection_file also sets default ports:
for name in port_names:
setattr(self, name, cfg[name])
self._connection_file_written = True
def load_connection_file(self):
"""Load connection info from JSON dict in self.connection_file."""
self.log.debug(u"Loading connection file %s", self.connection_file)
with open(self.connection_file) as f:
cfg = json.load(f)
self.transport = cfg.get('transport', self.transport)
self.ip = cfg.get('ip', self._ip_default())
for name in port_names:
if getattr(self, name) == 0 and name in cfg:
# not overridden by config or cl_args
setattr(self, name, cfg[name])
if 'key' in cfg:
self.session.key = str_to_bytes(cfg['key'])
if 'signature_scheme' in cfg:
self.session.signature_scheme = cfg['signature_scheme']
#--------------------------------------------------------------------------
# Creating connected sockets
#--------------------------------------------------------------------------
def _make_url(self, channel):
"""Make a ZeroMQ URL for a given channel."""
transport = self.transport
ip = self.ip
port = getattr(self, '%s_port' % channel)
if transport == 'tcp':
return "tcp://%s:%i" % (ip, port)
else:
return "%s://%s-%s" % (transport, ip, port)
def _create_connected_socket(self, channel, identity=None):
"""Create a zmq Socket and connect it to the kernel."""
url = self._make_url(channel)
socket_type = channel_socket_types[channel]
self.log.debug("Connecting to: %s" % url)
sock = self.context.socket(socket_type)
# set linger to 1s to prevent hangs at exit
sock.linger = 1000
if identity:
sock.identity = identity
sock.connect(url)
return sock
def connect_iopub(self, identity=None):
"""return zmq Socket connected to the IOPub channel"""
sock = self._create_connected_socket('iopub', identity=identity)
sock.setsockopt(zmq.SUBSCRIBE, b'')
return sock
def connect_shell(self, identity=None):
"""return zmq Socket connected to the Shell channel"""
return self._create_connected_socket('shell', identity=identity)
def connect_stdin(self, identity=None):
"""return zmq Socket connected to the StdIn channel"""
return self._create_connected_socket('stdin', identity=identity)
def connect_hb(self, identity=None):
"""return zmq Socket connected to the Heartbeat channel"""
return self._create_connected_socket('hb', identity=identity)
def connect_control(self, identity=None):
"""return zmq Socket connected to the Control channel"""
return self._create_connected_socket('control', identity=identity)
class Foo(Configurable):
a = Integer(0, config=True, help="The integer a.")
b = Unicode('nope', config=True)
class Foo(Configurable):
i = Integer(0, config=True, help="The integer i.")
j = Integer(1, config=True, help="The integer j.")
name = Unicode(u'Brian', config=True, help="First name.")