def backendRateCallbackBuckets(self,
cpp_coords,
coords_len,
occupations,
update,
types_map,
rate_constant,
process_number,
global_x,
global_y,
global_z):
"""
Function called from C++ to get the rate. It function recieves
the data from C++ and parse it to a Python friendly format to send it
forward to the custom rate function.
"""
# PERFORMME: move operations to C++.
# Determine the occupations after the move.
occupations_after = Backend.StdVectorTypeBucket()
for i in range(len(update)):
occupations_after.push_back(occupations[i].add(update[i]))
# Call and return the custom rate.
global_coordinate = (global_x, global_y, global_z)
return self.rate(numpy.array(cpp_coords).reshape(coords_len,3),
stdVectorTypeBucketToPython(occupations, types_map),
stdVectorTypeBucketToPython(occupations_after, types_map),
rate_constant,
process_number,
global_coordinate)
def testStdVectorBucketTypeToPython(self):
""" Test the buckets format conversion routine from C++ to Python. """
empty_py_vector = stdVectorTypeBucketToPython(
Backend.StdVectorTypeBucket(), Backend.StdVectorString())
self.assertEqual(empty_py_vector, [])
# Add a vector with content.
cpp_map = Backend.StdVectorString(3)
cpp_map[0] = "*"
cpp_map[1] = "A"
cpp_map[2] = "B"
cpp_vector = Backend.StdVectorTypeBucket(4, Backend.TypeBucket(3))
# [(1,"A")]
cpp_vector[0][0] = 0
cpp_vector[0][1] = 1
cpp_vector[0][2] = 0
# []
cpp_vector[1][0] = 0
cpp_vector[1][1] = 0
cpp_vector[1][2] = 0
# [(3,"A"), (1, "B")]
cpp_vector[2][0] = 0
cpp_vector[2][1] = 3
cpp_vector[2][2] = 1
# [(4,"A"), (5, "B")]
cpp_vector[3][0] = 1
cpp_vector[3][1] = 4
cpp_vector[3][2] = 5
# Translate to Python.
py_vector = stdVectorTypeBucketToPython(cpp_vector, cpp_map)
ref_py_vector = [[(1, "A")], [], [(3, "A"), (1, "B")],
[(4, "A"), (5, "B")]]
# Check.
self.assertEqual(py_vector, ref_py_vector)