def test_compute_percent_of_number_of_reps_in_population(self):
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
self.HGT_process.compute_percent_of_number_of_reps_in_population(
self.population)
self.assertEqual([3**-1, 3**-1, 1],
self.HGT_process.fraction_of_reps_that_has_1)
def test_no_HGT_process(self):
self.HGT_factor = 0
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual(self.rep, mutated_rep)
def test_HGT_process_3_times(self):
number_of_genes = 3
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, number_of_genes)
with patch.object(self.HGT_process,
'get_fraction_of_reps_with_gene') as mock_func:
mock_func.return_value = 1
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual((1, 0, 1), mutated_rep)
def test_HGT_process_occurred(self):
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
gene_index = 2
self.HGT_process.compute_percent_of_number_of_reps_in_population(
self.population)
with patch.object(self.HGT_process,
'get_random_gene_index') as mock_func:
mock_func.return_value = gene_index
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual(1, mutated_rep[gene_index])
def test_no_HGT_process(self):
self.HGT_factor = 0
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual(self.rep, mutated_rep)
def test_HGT_process_3_times(self):
number_of_genes = 3
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, number_of_genes)
with patch.object(self.HGT_process, 'get_fraction_of_reps_with_gene') as mock_func:
mock_func.return_value = 1
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual((1, 0, 1), mutated_rep)
def test_HGT_process_occurred(self):
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
gene_index = 2
self.HGT_process.compute_percent_of_number_of_reps_in_population(self.population)
with patch.object(self.HGT_process, 'get_random_gene_index') as mock_func:
mock_func.return_value = gene_index
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual(1, mutated_rep[gene_index])
class TestHGTProcess(unittest.TestCase):
def setUp(self):
self.rep = (0, 1, 0)
self.length = 3
self.population = [(1, 0, 1), (0, 0, 1), (0, 1, 1)]
self.HGT_factor = 1
def test_no_HGT_process(self):
self.HGT_factor = 0
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual(self.rep, mutated_rep)
def test_HGT_process_occurred(self):
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
gene_index = 2
self.HGT_process.compute_percent_of_number_of_reps_in_population(
self.population)
with patch.object(self.HGT_process,
'get_random_gene_index') as mock_func:
mock_func.return_value = gene_index
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual(1, mutated_rep[gene_index])
def test_compute_percent_of_number_of_reps_in_population(self):
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, 1)
self.HGT_process.compute_percent_of_number_of_reps_in_population(
self.population)
self.assertEqual([3**-1, 3**-1, 1],
self.HGT_process.fraction_of_reps_that_has_1)
def test_HGT_process_3_times(self):
number_of_genes = 3
self.HGT_process = HGTProcessConstantGenesNumber(
self.HGT_factor, self.length, number_of_genes)
with patch.object(self.HGT_process,
'get_fraction_of_reps_with_gene') as mock_func:
mock_func.return_value = 1
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(
self.rep, self.population)
self.assertEqual((1, 0, 1), mutated_rep)
class TestHGTProcess(unittest.TestCase):
def setUp(self):
self.rep = (0, 1, 0)
self.length = 3
self.population = [(1, 0, 1), (0, 0, 1), (0, 1, 1)]
self.HGT_factor = 1
def test_no_HGT_process(self):
self.HGT_factor = 0
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual(self.rep, mutated_rep)
def test_HGT_process_occurred(self):
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
gene_index = 2
self.HGT_process.compute_percent_of_number_of_reps_in_population(self.population)
with patch.object(self.HGT_process, 'get_random_gene_index') as mock_func:
mock_func.return_value = gene_index
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual(1, mutated_rep[gene_index])
def test_compute_percent_of_number_of_reps_in_population(self):
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
self.HGT_process.compute_percent_of_number_of_reps_in_population(self.population)
self.assertEqual([3**-1, 3**-1, 1], self.HGT_process.fraction_of_reps_that_has_1)
def test_HGT_process_3_times(self):
number_of_genes = 3
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, number_of_genes)
with patch.object(self.HGT_process, 'get_fraction_of_reps_with_gene') as mock_func:
mock_func.return_value = 1
mutated_rep = self.HGT_process.get_a_mutation_from_the_reps(self.rep, self.population)
self.assertEqual((1, 0, 1), mutated_rep)
def test_compute_percent_of_number_of_reps_in_population(self):
self.HGT_process = HGTProcessConstantGenesNumber(self.HGT_factor, self.length, 1)
self.HGT_process.compute_percent_of_number_of_reps_in_population(self.population)
self.assertEqual([3**-1, 3**-1, 1], self.HGT_process.fraction_of_reps_that_has_1)