def test_single_name(self):
u = make_Universe(trajectory=True)
w = XYZWriter(self.outfile, atoms='ABC')
w.write(u.trajectory.ts)
w.close()
u2 = mda.Universe(self.outfile)
assert_(all(u2.atoms.names == 'ABC'))
def test_no_names(self, outfile):
u = make_Universe(trajectory=True)
w = XYZWriter(outfile)
w.write(u.trajectory.ts)
w.close()
u2 = mda.Universe(outfile)
assert all(u2.atoms.names == 'X')
def test_single_name(self):
u = make_Universe(trajectory=True)
w = XYZWriter(self.outfile, atoms='ABC')
w.write(u.trajectory.ts)
w.close()
u2 = mda.Universe(self.outfile)
assert_(all(u2.atoms.names == 'ABC'))
def test_list_names(self):
u = make_Universe(trajectory=True)
names = ['A', 'B', 'C', 'D', 'E'] * 25
w = XYZWriter(self.outfile, atoms=names)
w.write(u.trajectory.ts)
w.close()
u2 = mda.Universe(self.outfile)
assert_(all(u2.atoms.names == names))
def test_list_names(self):
u = make_Universe(trajectory=True)
names = ['A', 'B', 'C', 'D', 'E'] * 25
w = XYZWriter(self.outfile, atoms=names)
w.write(u.trajectory.ts)
w.close()
u2 = mda.Universe(self.outfile)
assert_(all(u2.atoms.names == names))