def add_parser(tool_subparsers, **kwargs):
"""
Adds subparser for this analysis to a nascent argument parser
**Arguments:**
:*tool_subparsers*: Argparse subparsers object to add subparser
:*args*: Passed to tool_subparsers.add_parser(...)
:*\*\*kwargs*: Passed to tool_subparsers.add_parser(...)
.. todo:
- Implement nested subparser (should be 'amber log', not just 'log')
"""
from MDclt import overridable_defaults
subparser = primary.add_parser(tool_subparsers,
name = "log",
help = "Load AMBER logs")
arg_groups = {ag.title:ag for ag in subparser._action_groups}
arg_groups["input"].add_argument(
"-frames_per_file",
type = int,
required = False,
help = "Number of frames in each file; used to check if new data " +
"is present")
arg_groups["input"].add_argument(
"-start_time",
type = float,
required = False,
help = "Time of first frame (ns) (optional)")
arg_groups["output"].add_argument(
"-output",
type = str,
required = True,
nargs = "+",
action = overridable_defaults(nargs = 2, defaults = {1: "/log"}),
help = "H5 file and optionally address in which to output data " +
"(default address: /log)")
subparser.set_defaults(analysis = command_line)
def add_parser(tool_subparsers, **kwargs):
"""
Adds subparser for this analysis to a nascent argument parser
**Arguments:**
:*tool_subparsers*: argparse subparsers object to add subparser
:*args*: Passed to tool_subparsers.add_parser(...)
:*kwargs*: Passed to tool_subparsers.add_parser(...)
"""
from MDclt import overridable_defaults
subparser = primary.add_parser(tool_subparsers,
name = "raw",
help = "Load raw text files")
arg_groups = {ag.title: ag for ag in subparser._action_groups}
arg_groups["input"].add_argument(
"-frames_per_file",
type = int,
required = False,
help = "Number of frames in each file; used to check if new data " +
"is present")
arg_groups["input"].add_argument(
"-dimensions",
type = int,
required = False,
nargs = "*",
help = "Additional dimensions in dataset; if multidimensional " +
"(optional)")
arg_groups["output"].add_argument(
"-output",
type = str,
required = True,
nargs = "+",
action = overridable_defaults(nargs = 2, defaults = {1: "/dataset"}),
help = "H5 file and optionally address in which to output data " +
"(default address: /dataset)")
subparser.set_defaults(analysis = command_line)