コード例 #1
0
ファイル: HostAssayPrep.py プロジェクト: JAX-GM/cutlass
    def derivations(self):
        """
        Return an iterator of all the derived nodes from this prep, including
        lipidomes, metabolomes, cytokines, etc...
        """
        self.logger.debug("In derivations().")

        from Cytokine import Cytokine
        from Lipidome import Lipidome
        from Metabolome import Metabolome
        from Proteome import Proteome

        for doc in self._derived_docs():
            if doc['node_type'] == "lipidome":
                yield Lipidome.load_lipidome(doc)
            elif doc['node_type'] == "metabolome":
                yield Metabolome.load_metabolome(doc)
            elif doc['node_type'] == "cytokine":
                yield Cytokine.load_cytokine(doc)
            elif doc['node_type'] == "proteome":
                yield Proteome.load_proteome(doc)
コード例 #2
0
ファイル: HostAssayPrep.py プロジェクト: JAX-GM/cutlass
    def metabolomes(self):
        """
        Returns an iterator of all Metabolomes connected to this HostAssayPrep.
        """
        self.logger.debug("In metabolomes().")

        linkage_query = '"{}"[linkage.derived_from] and "metabolome"[node_type]'.format(self.id)

        query = iHMPSession.get_session().get_osdf().oql_query

        from Metabolome import Metabolome

        for page_no in count(1):
            res = query(HostAssayPrep.namespace, linkage_query, page=page_no)
            res_count = res['result_count']

            for doc in res['results']:
                yield Metabolome.load_metabolome(doc)

            res_count -= len(res['results'])

            if res_count < 1:
                break