def test_PeptideAromaticCycleBondSelector_select_some(self):
"""
test PeptideAromaticCycleBond select: 6 bonds
"""
PABS = PeptideAromaticCycleBondSelector()
bnds = self.mol.chains.residues[:21].atoms.bonds[0] #includes 1 PHE
resultBnds = PABS.select(bnds)
self.assertEqual(len(resultBnds), 6)
def test_PeptideAromaticCycleBondSelector_select_some(self):
"""
test PeptideAromaticCycleBond select: 6 bonds
"""
PABS = PeptideAromaticCycleBondSelector()
bnds = self.mol.chains.residues[:21].atoms.bonds[0] #includes 1 PHE
resultBnds = PABS.select(bnds)
self.assertEqual(len(resultBnds), 6)
def test_PeptideAromaticCycleBondSelector_labels_aromatic_bnds(self):
"""
test PeptideAromaticCycleBond labels aromatic bnds
"""
PABS = PeptideAromaticCycleBondSelector()
bnds = self.mol.chains.residues.atoms.bonds[0]
resultBnds = PABS.select(bnds)
for b in resultBnds:
self.assertEqual(hasattr(b, 'aromatic'), True)
def test_PeptideAromaticCycleBondSelector_select_all(self):
"""
test PeptideAromaticCycleBond select: all aromatic bonds in 1crn
"""
PABS = PeptideAromaticCycleBondSelector()
ats = self.mol.allAtoms
bnds = ats.bonds[0]
resultBnds = PABS.select(bnds)
self.assertEqual(len(resultBnds), 18)
def test_PeptideAromaticCycleBondSelector_labels_aromatic_bnds(self):
"""
test PeptideAromaticCycleBond labels aromatic bnds
"""
PABS = PeptideAromaticCycleBondSelector()
bnds = self.mol.chains.residues.atoms.bonds[0]
resultBnds = PABS.select(bnds)
for b in resultBnds:
self.assertEqual(hasattr(b, 'aromatic'), True)
def test_PeptideAromaticCycleBondSelector_select_all(self):
"""
test PeptideAromaticCycleBond select: all aromatic bonds in 1crn
"""
PABS = PeptideAromaticCycleBondSelector()
ats = self.mol.allAtoms
bnds = ats.bonds[0]
resultBnds = PABS.select(bnds)
self.assertEqual(len(resultBnds), 18)
