def GenerateGUI(self, event=None):
import wx
from PYME.LMVis import genImageDialog
from PYME.DSView import ViewIm3D
jitVars = ['1.0']
jitVars += self.colourFilter.keys()
self.genMeas = list(self.pipeline.GeneratedMeasures.keys())
if not 'neighbourDistances' in self.genMeas:
self.genMeas.append('neighbourDistances')
if not 'neighbourErrorMin' in self.genMeas:
self.genMeas.append('neighbourErrorMin')
jitVars += self.genMeas
if 'z' in self.pipeline.keys():
zvals = self.pipeline['z']
else:
zvals = None
dlg = genImageDialog.GenImageDialog(
self.mainWind,
mode=self.mode,
defaultPixelSize=self._defaultPixelSize,
colours=self.colourFilter.getColourChans(),
zvals=zvals,
jitterVariables=jitVars,
jitterVarDefault=self._getDefaultJitVar(jitVars),
jitterVarDefaultZ=self._getDefaultZJitVar(jitVars))
ret = dlg.ShowModal()
#bCurr = wx.BusyCursor()
if ret == wx.ID_OK:
im = self.Generate(dlg.get_settings())
imfc = ViewIm3D(im,
mode='visGUI',
title='Generated %s - %3.1fnm bins' %
(self.name, im.pixelSize),
glCanvas=self.visFr.glCanvas,
parent=self.mainWind)
else:
imfc = None
dlg.Destroy()
return imfc
def GenerateGUI(self, event=None):
import wx
from PYME.LMVis import genImageDialog
from PYME.DSView import ViewIm3D
dlg = genImageDialog.GenImageDialog(self.mainWind, mode=self.mode)
ret = dlg.ShowModal()
#bCurr = wx.BusyCursor()
if ret == wx.ID_OK:
img = self.Generate(dlg.get_settings())
imf = ViewIm3D(img,
mode='visGUI',
title='Generated %s - %3.1fnm bins' %
(self.name, img.pixelSize),
glCanvas=self.visFr.glCanvas,
parent=self.mainWind)
self.visFr.RefreshView()
dlg.Destroy()
return imf
def GenerateGUI(self, event=None, renderSettings=None, splitSettings=None):
import wx
from PYME.LMVis import genImageDialog
from PYME.DSView import ViewIm3D
if renderSettings is None:
jitVars = ['1.0']
jitVars += self.colourFilter.keys()
self.genMeas = self.pipeline.GeneratedMeasures.keys()
if not 'neighbourDistances' in self.genMeas:
self.genMeas.append('neighbourDistances')
if not 'neighbourErrorMin' in self.genMeas:
self.genMeas.append('neighbourErrorMin')
jitVars += self.genMeas
if 'z' in self.pipeline.keys():
zvals = self.pipeline['z']
else:
zvals = None
dlg = genImageDialog.GenImageDialog(
self.mainWind,
mode=self.mode,
defaultPixelSize=self._defaultPixelSize,
colours=self.colourFilter.getColourChans(),
zvals=zvals,
jitterVariables=jitVars,
jitterVarDefault=self._getDefaultJitVar(jitVars),
jitterVarDefaultZ=self._getDefaultZJitVar(jitVars))
ret = dlg.ShowModal()
generateSettings = dlg.get_settings()
else:
ret = wx.ID_OK
generateSettings = {
'pixelSize': renderSettings['PixelSize'],
'jitterVariable': 'neighbourDistances',
'jitterScale': renderSettings['JitterFactor'],
'jitterVariableZ': None,
'jitterScaleZ': None,
'MCProbability': 1.0,
'numSamples': renderSettings['SamplesToAverage'],
'colours': None,
'zBounds': [None, None],
'zSliceThickness': 200,
'softRender': True
}
if ret == wx.ID_OK:
im = self.Generate(generateSettings, splitSettings=splitSettings)
imfc = ViewIm3D(im,
mode='visGUI',
title='Generated %s - %3.1fnm bins' %
(self.name, im.pixelSize),
glCanvas=self.visFr.glCanvas,
parent=self.mainWind)
else:
imfc = None
dlg.Destroy()
return imfc