def evidence_for_3770():
nSamples = 2000
model_keys = ['XsL', 'XsXs']
channels = [0, 1, 2, 3]
directory_labels = [
'small_box_log_flat_nr', 'mid_box_log_flat_nr',
'large_box_log_flat_nr', 'small_box_flat_nr', 'mid_box_flat_nr',
'large_box_flat_nr', 'delta_nr', 'gaussian_nr'
]
model_dict = {}
for key in model_keys:
for directory_label in directory_labels:
m_key = f'{key}_{directory_label}'
model_dict[m_key] = create_model_from_key(
key, custom_name=f'{key}_{directory_label}')
models = [model for key, model in model_dict.items()]
GRB = PulseFitter(3770,
times=(-.1, 1),
datatype='tte',
nSamples=nSamples,
sampler=SAMPLER,
priors_pulse_start=-.1,
priors_pulse_end=0.6,
priors_td_lo=0,
priors_td_hi=0.5)
GRB.offsets = [0, 4000, 8000, -3000]
for model in models:
GRB.get_residuals(channels=[0, 1, 2, 3], model=model)
GRB.lens_calc(channels=[0, 1, 2, 3], model=model)
GRB.get_evidence_from_models(model_dict)
def run_gaussian_priors(indices, model_keys, channels, nSamples, n_per_split,
test):
directory_label = 'gaussian_nr'
if not test:
GRB_wrap = PulseFitter(3770,
times=(-.1, 1),
datatype='tte',
nSamples=nSamples,
sampler=SAMPLER,
priors_pulse_start=-.1,
priors_pulse_end=0.6,
priors_td_lo=0,
priors_td_hi=0.5,
directory_label=directory_label)
GRB_wrap.offsets = [0, 4000, 8000, -3000]
else:
print('Currently running Gaussian priors')
model_dict = {}
for key in model_keys:
model_dict[key] = create_model_from_key(
key, custom_name=f'{key}_{directory_label}')
models = [model for key, model in model_dict.items()]
for mm, model in enumerate(models):
if not test:
GRB_wrap._setup_labels(model)
overwrite_priors = dict()
for n in range(1, GRB_wrap.num_pulses + 1):
overwrite_priors[f'gamma_{n}_a'] = bilbyGaussian(
mu=0.7, sigma=2.5, latex_label=f'$\\gamma$ {n} a')
overwrite_priors[f'gamma_{n}_b'] = bilbyGaussian(
mu=0.3, sigma=0.4, latex_label=f'$\\gamma$ {n} b')
overwrite_priors[f'gamma_{n}_c'] = bilbyGaussian(
mu=0.38, sigma=0.3, latex_label=f'$\\gamma$ {n} c')
overwrite_priors[f'gamma_{n}_d'] = bilbyGaussian(
mu=0.5, sigma=5, latex_label=f'$\\gamma$ {n} d')
overwrite_priors[f'nu_{n}_a'] = bilbyGaussian(
mu=2, sigma=2, latex_label=f'$\\nu$ {n} a')
overwrite_priors[f'nu_{n}_b'] = bilbyGaussian(
mu=3.3, sigma=1.2, latex_label=f'$\\nu$ {n} b')
overwrite_priors[f'nu_{n}_c'] = bilbyGaussian(
mu=2.74, sigma=0.8, latex_label=f'$\\nu$ {n} c')
overwrite_priors[f'nu_{n}_d'] = bilbyGaussian(
mu=2.7, sigma=5, latex_label=f'$\\nu$ {n} d')
GRB_wrap.overwrite_priors = overwrite_priors
loop_idx = np.arange(4 * mm, 4 * (mm + 1))
if test:
print(indices)
print(mm)
print('loop_idx = ', loop_idx)
indx = np.intersect1d(indices, loop_idx) % 4
if not test:
GRB_wrap._split_array_job_to_4_channels(models=[model],
indices=indx,
channels=channels)
else:
print('index passed = ', indx)
def main_two_pulse_models():
""" These are the most relevant models to the analysis of GRB 950830. """
lens_keys = ['FL', 'FsL', 'XL', 'XsL']
null_keys = ['FF', 'FsFs', 'XX', 'XsXs']
keys = lens_keys + null_keys
model_dict = {}
for key in keys:
model_dict[key] = create_model_from_key(key)
return model_dict
def test_parameter_recovery(self):
model_dict = {}
for key in self.keys:
model_dict[key] = create_model_from_key(key)
models = [model for key, model in model_dict.items()]
for model in models:
self.discsc_fit.main_multi_channel(channels=[0, 1, 2, 3],
model=model)
lens_bounds = [(0.37, 0.42), (0.60, 1.8)]
# lens calc doesnt work because it is trying to multiply together 4 posteriors
# WHICH DO NOT OVERLAP
# they do now 3770 is being tested
self.discsc_fit.lens_calc(model=model, lens_bounds=lens_bounds)
self.discsc_fit.get_evidence_from_models(model_dict=model_dict)
shutil.rmtree('test_products/3770_model_comparison_201')
def evidence_for_973():
num_samples = [2000]
for samples in num_samples:
GRB = load_973(sampler=SAMPLER, nSamples=samples)
keys = ['FL', 'FF']
model_dict = {}
for key in keys:
model_dict[key] = create_model_from_key(key)
models = [model for key, model in model_dict.items()]
for model in models:
GRB.main_multi_channel(channels = [0, 1, 2, 3], model = model)
lens_bounds = [(21, 22.6), (0.25, 0.55)]
GRB.lens_calc(model = model, lens_bounds = lens_bounds)
GRB.get_evidence_from_models(model_dict = model_dict)
def run_delta_priors(indices, model_keys, channels, nSamples, n_per_split,
test):
directory_label = 'delta_nr'
if not test:
GRB_wrap = PulseFitter(3770,
times=(-.1, 1),
datatype='tte',
nSamples=nSamples,
sampler=SAMPLER,
priors_pulse_start=-.1,
priors_pulse_end=0.6,
priors_td_lo=0,
priors_td_hi=0.5,
directory_label=directory_label)
GRB_wrap.offsets = [0, 4000, 8000, -3000]
else:
print('Currently running delta function priors')
model_dict = {}
for key in model_keys:
model_dict[key] = create_model_from_key(
key, custom_name=f'{key}_{directory_label}')
models = [model for key, model in model_dict.items()]
for mm, model in enumerate(models):
if not test:
GRB_wrap._setup_labels(model)
overwrite_priors = dict()
for n in range(1, GRB_wrap.num_pulses + 1):
for k in ['a', 'b', 'c', 'd']:
overwrite_priors[f'gamma_{n}_{k}'] = bilbyDeltaFunction(
1, latex_label=f'$\\gamma$ {n} {k}')
overwrite_priors[f'nu_{n}_{k}'] = bilbyDeltaFunction(
1, latex_label=f'$\\nu$ {n} {k}')
GRB_wrap.overwrite_priors = overwrite_priors
loop_idx = np.arange(4 * mm, 4 * (mm + 1))
if test:
print(indices)
print(mm)
print('loop_idx = ', loop_idx)
indx = np.intersect1d(indices, loop_idx) % 4
if not test:
GRB_wrap._split_array_job_to_4_channels(models=[model],
indices=indx,
channels=channels)
else:
print('index passed = ', indx)
def evidence_for_3770():
num_samples = [500]
for samples in num_samples:
GRB = load_3770(sampler=SAMPLER, nSamples=samples)
GRB.offsets = [0, 4000, 8000, -3000]
keys = ['FL', 'FF']
model_dict = {}
for key in keys:
model_dict[key] = create_model_from_key(key)
models = [model for key, model in model_dict.items()]
for model in models:
GRB.main_multi_channel(channels=[0, 1, 2, 3], model=model)
lens_bounds = [(0.37, 0.42), (0.60, 1.8)]
GRB.lens_calc(model=model, lens_bounds=lens_bounds)
GRB.get_evidence_from_models(model_dict=model_dict)
def test_parameter_recovery(self):
model = create_model_from_key(self.key)
self.discsc_fit.main_1_channel(channel=1, model=model)
result_label = f'{self.discsc_fit.fstring}{self.discsc_fit.clabels[1]}'
open_result = f'{self.discsc_fit.outdir}/{result_label}_result.json'
result = bilby.result.read_in_result(filename=open_result)
prior_shell = MakePriors(priors_pulse_start=self.priors_pulse_start,
priors_pulse_end=self.priors_pulse_end,
channel=1,
**model)
priors = prior_shell.return_prior_dict()
posteriors = dict()
for parameter in priors:
posteriors[parameter] = np.median(
result.posterior[parameter].values)
for parameter in priors:
assert ((abs(posteriors[parameter] - self.parameters[parameter])) /
self.parameters[parameter]) < 0.1
def run_flat_priors(indices, model_keys, channels, nSamples, n_per_split,
test):
directory_labels = [
'small_box_flat_nr', 'mid_box_flat_nr', 'large_box_flat_nr'
]
prior_sets = [
{
'priors_gamma_min': 1e-1, ## generic
'priors_gamma_max': 1e1,
'priors_nu_min': 1e-1,
'priors_nu_max': 1e1
},
{
'priors_gamma_min': 1e-2,
'priors_gamma_max': 1e2,
'priors_nu_min': 1e-2,
'priors_nu_max': 1e2
},
{
'priors_gamma_min': 1e-3,
'priors_gamma_max': 1e3,
'priors_nu_min': 1e-3,
'priors_nu_max': 1e3
}
]
for ii, prior_set in enumerate(prior_sets):
if not test:
GRB_wrap = PulseFitter(3770,
times=(-.1, 1),
datatype='tte',
nSamples=nSamples,
sampler=SAMPLER,
priors_pulse_start=-.1,
priors_pulse_end=0.6,
priors_td_lo=0,
priors_td_hi=0.5,
directory_label=directory_labels[ii])
GRB_wrap.offsets = [0, 4000, 8000, -3000]
else:
print('Currently running flat priors')
model_dict = {}
for key in model_keys:
model_dict[key] = create_model_from_key(
key, custom_name=f'{key}_{directory_labels[ii]}')
models = [model for key, model in model_dict.items()]
for mm, model in enumerate(models):
if not test:
GRB_wrap._setup_labels(model)
overwrite_priors = dict()
for n in range(1, GRB_wrap.num_pulses + 1):
for k in ['a', 'b', 'c', 'd']:
overwrite_priors[f'gamma_{n}_{k}'] = bilbyUniform(
minimum=prior_set['priors_gamma_min'],
maximum=prior_set['priors_gamma_max'],
latex_label=f'$\\gamma_{n} {k}$',
unit=' ')
overwrite_priors[f'nu_{n}_{k}'] = bilbyUniform(
minimum=prior_set['priors_nu_min'],
maximum=prior_set['priors_nu_max'],
latex_label=f'$\\nu_{n} {k}$',
unit=' ')
GRB_wrap.overwrite_priors = overwrite_priors
loop_idx = np.arange(8 * ii + 4 * mm, 8 * ii + 4 * (mm + 1))
if test:
print(indices)
print(ii, mm)
print('loop_idx = ', loop_idx)
indx = np.intersect1d(indices, loop_idx) % 4
if not test:
GRB_wrap._split_array_job_to_4_channels(models=[model],
indices=indx,
channels=channels)
else:
print('index passed = ', indx)
def run_log_flat_priors(indices, model_keys, channels, nSamples, n_per_split,
test):
directory_labels = [
'small_box_log_flat_nr', 'mid_box_log_flat_nr', 'large_box_log_flat_nr'
]
prior_sets = [
{
'priors_gamma_min': 1e-1, ## generic
'priors_gamma_max': 1e1,
'priors_nu_min': 1e-1,
'priors_nu_max': 1e1
},
{
'priors_gamma_min': 1e-2,
'priors_gamma_max': 1e2,
'priors_nu_min': 1e-2,
'priors_nu_max': 1e2
},
{
'priors_gamma_min': 1e-3,
'priors_gamma_max': 1e3,
'priors_nu_min': 1e-3,
'priors_nu_max': 1e3
}
]
for ii, prior_set in enumerate(prior_sets):
if not test:
GRB_wrap = PulseFitter(3770,
times=(-.1, 1),
datatype='tte',
nSamples=nSamples,
sampler=SAMPLER,
priors_pulse_start=-.1,
priors_pulse_end=0.6,
priors_td_lo=0,
priors_td_hi=0.5,
directory_label=directory_labels[ii],
**prior_set)
GRB_wrap.offsets = [0, 4000, 8000, -3000]
else:
print('Currently running log-flat priors')
model_dict = {}
for key in model_keys:
model_dict[key] = create_model_from_key(
key, custom_name=f'{key}_{directory_labels[ii]}')
models = [model for key, model in model_dict.items()]
indx = np.intersect1d(
indices, np.arange(n_per_split * ii, n_per_split *
(ii + 1))) % n_per_split
## given 2 models and 4 channels should be passed indx in [0-7]
if not test:
GRB_wrap._split_array_job_to_4_channels(models=models,
indices=indx,
channels=channels)
else:
print(indx)
from PyGRB.main.fitpulse import PulseFitter
from PyGRB.backend.makemodels import create_model_from_key
GRB = PulseFitter(7475, times = (-2, 60),
datatype = 'discsc', nSamples = 200, sampler = 'nestle',
priors_pulse_start = -5, priors_pulse_end = 30,
p_type = 'docs', HPC = False, )
keys = ['G', 'F', 'X', 'Gs', 'Fs', 'Xs']
# the last three models will take a non-trivial time to run
model_dict = {}
for key in keys:
model_dict[key] = create_model_from_key(key)
models = [model for key, model in model_dict.items()]
for model in models:
GRB.main_multi_channel(channels = [0, 1, 2, 3], model = model)
GRB.get_evidence_from_models(model_dict = model_dict)