def box_plot(self, iFile, xLabel):
pp = PyPlot()
inFile = open(iFile)
head = inFile.readline()
for line in inFile:
line = line.strip()
fields = line.split("\t")
pp.filename = iFile + "." + fields[0] + ".pdf"
group1 = [int(x) for x in fields[-8:-4]]
group2 = [int(x) for x in fields[-4:]]
pp.box_plot([group1, group2], [xLabel[0] + ":" + fields[0], xLabel[1] + ":" + fields[0]])
inFile.close()
def __legacy_box_plot(self, iFileList, filename, xLabel=0, yLabel=0):
pp = PyPlot(filename)
aList = []
for item in iFileList:
L = list()
for it in item:
row = 0
inFile = open(it)
for line in inFile:
row += 1
inFile.close()
L.append(row)
aList.append(L)
pp.box_plot(aList, xLabel)
def __legacy_box_plot(self, iFileList, filename, xLabel=0, yLabel=0):
pp = PyPlot(filename)
aList = []
for item in iFileList:
L = list()
for it in item:
row = 0
inFile = open(it)
for line in inFile:
row += 1
inFile.close()
L.append(row)
aList.append(L)
pp.box_plot(aList, xLabel)
def box_plot(self, iFile, xLabel):
pp = PyPlot()
inFile = open(iFile)
head = inFile.readline()
for line in inFile:
line = line.strip()
fields = line.split('\t')
pp.filename = iFile + '.' + fields[0] + '.pdf'
group1 = [int(x) for x in fields[-8:-4]]
group2 = [int(x) for x in fields[-4:]]
pp.box_plot(
[group1, group2],
[xLabel[0] + ':' + fields[0], xLabel[1] + ':' + fields[0]])
inFile.close()