class NotebookExtSettingsDialog(QDialog):
def __init__(self, parent=None, cfg_list=[]):
super(NotebookExtSettingsDialog, self).__init__(parent)
self.extCfgEdit = QTreeWidget()
self.extCfgEdit.setHeaderLabels(['Property', 'Value'])
self.addRow = QPushButton('+')
self.removeRow = QPushButton('-')
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel)
layout = QGridLayout(self)
layout.addWidget(self.extCfgEdit, 0, 0, 1, 2)
layout.addWidget(self.addRow, 1, 0, 1, 1)
layout.addWidget(self.removeRow, 1, 1, 1, 1)
layout.addWidget(self.buttonBox, 2, 0, 1, 2)
self.initCfgPanel(cfg_list)
self.addRow.clicked.connect(self.actionAdd)
self.removeRow.clicked.connect(self.actionRemove)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
def initCfgPanel(self, cfg_list):
for item in cfg_list:
self.actionAdd(prop_name=item[0], prop_val=item[1])
def actionRemove(self):
item = self.extCfgEdit.currentItem()
row = self.extCfgEdit.indexOfTopLevelItem(item)
self.extCfgEdit.takeTopLevelItem(row)
def actionAdd(self, checked=False, prop_name='', prop_val=''):
item = QTreeWidgetItem(self.extCfgEdit, [prop_name, prop_val])
item.setFlags(item.flags() | Qt.ItemIsEditable)
#self.extCfgEdit.addTopLevelItem(item)
def configToList(self):
items = []
for i in range(self.extCfgEdit.topLevelItemCount()):
witem = self.extCfgEdit.topLevelItem(i)
items.append((witem.text(0), witem.text(1)))
return items
class NotebookExtSettingsDialog(QDialog):
def __init__(self, parent=None, cfg_list=[]):
super(NotebookExtSettingsDialog, self).__init__(parent)
self.extCfgEdit = QTreeWidget()
self.extCfgEdit.setHeaderLabels(['Property', 'Value'])
self.addRow = QPushButton('+')
self.removeRow = QPushButton('-')
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok |
QDialogButtonBox.Cancel)
layout = QGridLayout(self)
layout.addWidget(self.extCfgEdit,0,0,1,2)
layout.addWidget(self.addRow,1,0,1,1)
layout.addWidget(self.removeRow,1,1,1,1)
layout.addWidget(self.buttonBox,2,0,1,2)
self.initCfgPanel(cfg_list)
self.addRow.clicked.connect(self.actionAdd)
self.removeRow.clicked.connect(self.actionRemove)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
def initCfgPanel(self, cfg_list):
for item in cfg_list:
self.actionAdd(prop_name=item[0], prop_val=item[1])
def actionRemove(self):
item = self.extCfgEdit.currentItem()
row = self.extCfgEdit.indexOfTopLevelItem(item)
self.extCfgEdit.takeTopLevelItem(row)
def actionAdd(self, checked=False, prop_name='', prop_val=''):
item = QTreeWidgetItem(self.extCfgEdit, [prop_name, prop_val])
item.setFlags(item.flags()|Qt.ItemIsEditable)
#self.extCfgEdit.addTopLevelItem(item)
def configToList(self):
items = []
for i in range(self.extCfgEdit.topLevelItemCount()):
witem = self.extCfgEdit.topLevelItem(i)
items.append((witem.text(0), witem.text(1)))
return items
class MainWindow(QtGui.QMainWindow):
sig_update_tree = pyqtSignal(object, object, object)
sig_show_overview_plot = pyqtSignal()
def __init__(self, font, parent=None):
super(MainWindow, self).__init__(parent)
self.font = font
self.setWindowTitle("Meridien")
central_widget = QtGui.QWidget(self)
self.setCentralWidget(central_widget)
#Center on screen
resolution = QtGui.QDesktopWidget().screenGeometry()
self.move((resolution.width() / 2) - (self.frameSize().width() / 2),
(resolution.height() / 2) - (self.frameSize().height() / 2))
"""
Setting up menu bar
"""
close_action = QtGui.QAction('Close', self)
close_action.setShortcut("Ctrl+Q")
close_action.setStatusTip('Leave the app')
close_action.triggered.connect(lambda: self.close())
open_refinement_folder = QtGui.QAction('Open Refinement Folder', self)
open_refinement_folder.triggered.connect(self.open_refinement_folder)
self.mainMenu = self.menuBar()
self.fileMenu = self.mainMenu.addMenu('&File')
self.fileMenu.addAction(open_refinement_folder)
self.fileMenu.addAction(close_action)
self.refinement_folder = ""
create_new_fsc_plot = QtGui.QAction('&New FSC plot', self)
create_new_fsc_plot.triggered.connect(
self.event_ontriggered_show_fsc_plot)
create_new_overview_plot = QtGui.QAction(
'&New resolution overview plot', self)
create_new_overview_plot.triggered.connect(
self.event_show_resolution_overview_plot)
self.plotMenu = self.mainMenu.addMenu('&Plot')
self.plotMenu.addAction(create_new_fsc_plot)
self.plotMenu.addAction(create_new_overview_plot)
"""
Setup other components
"""
self.layout = QGridLayout(central_widget)
self.setMenuBar(self.mainMenu)
self.tree = QTreeWidget(self)
self.tree.setHeaderHidden(True)
self.layout.addWidget(self.tree, 1, 0)
self.root_items_path_dictionary = {}
# Threads
self.threadpool = QThreadPool()
self.thread_list = []
thr = QThread(self)
thr.start()
self.reader = DriverFileReader()
self.reader.moveToThread(thr)
self.thread_list.append(thr)
self.timer = QTimer(self)
# Connect signals
self.reader.sig_sendfolders.connect(self.fill_tree)
self.reader.sig_sendfsc.connect(self.show_dialog_fsc)
self.tree.itemChanged.connect(self._event_select_deselect_all)
self.sig_update_tree.connect(self.update_tree)
self.sig_show_overview_plot.connect(
self.event_show_resolution_overview_plot)
self.show()
self.open_refinement_folder()
self.monitor = None
@pyqtSlot(object, object, object)
def update_tree(self, item, monitored_folder, delete):
'''
:param item: main folder to add to tree item belonging to folder montiored_folder
:param monitored_folder: Refinement folder
:param delete: if this is true, it will delete the monitored folder
:return:
'''
if delete:
root = self.root_items_path_dictionary[monitored_folder]
index = self.tree.indexOfTopLevelItem(root)
self.tree.takeTopLevelItem(index)
else:
root = self.root_items_path_dictionary[monitored_folder]
root.addChild(item)
msg = QMessageBox()
msg.setIcon(QMessageBox.Information)
msg.setText("Meridien - There is data of a new run: " +
str(item.text(0)))
msg.setWindowTitle("Update")
msg.exec_()
@pyqtSlot(object, object, object, object)
def show_dialog_fsc(self, *args):
"""
Shows fsc plot
:param args: list of arguments
:return: None
"""
fsc_plot = FSCPlot(self)
fsc_plot.plot(*args)
@pyqtSlot()
def event_show_resolution_overview_plot(self):
"""
Trigger for fsc plot
:return: None
"""
tracker_reader = TrackerFileReader()
res_0143, res_05 = tracker_reader.read_res0143_and_res05(
self.refinement_folder)
res_plot = ResolutionOverviewPlot(parent=self)
res_plot.setWindowTitle(self.refinement_folder)
res_plot.plot(res_05, res_0143)
def event_ontriggered_show_fsc_plot(self):
"""
Trigger for fsc plot
:return: none
"""
checked_runs = self._get_checked_items()
paths = []
for checked_run in checked_runs:
refinement_folder = checked_run.parent().text(0)
path = os.path.join(str(refinement_folder),
str(checked_run.text(0)))
paths.append(path)
self.reader.sig_readfsc.emit(paths)
def _event_select_deselect_all(self, root_tree_item):
'''
Checks all childs of root_tree_item
:param root_tree_item: QTreeWidgetItem which represents a refinement folder
:return:
'''
if root_tree_item in self.root_items_path_dictionary.values():
number_of_runs = root_tree_item.childCount()
for i in range(number_of_runs):
child_run = root_tree_item.child(i)
child_run.setCheckState(0, root_tree_item.checkState(0))
def _get_checked_items(self):
"""
Finds the checked elements in tree
:return: List of checked QItemWidget
"""
checked_runs = []
for root in self.root_items_path_dictionary.values():
number_of_runs = root.childCount()
for i in range(number_of_runs):
main_run = root.child(i)
if main_run.checkState(0) == QtCore.Qt.Checked:
checked_runs.append(main_run)
return checked_runs
def open_refinement_folder(self):
"""
Let the user choose the refinement folder and adds it to the RefinementFolder-Tree
:return: none
"""
self.refinement_folder = str(
QtGui.QFileDialog.getExistingDirectory(
self, "Select Refinement Directory"))
if self.refinement_folder == "":
return
if self.refinement_folder in self.root_items_path_dictionary:
return
self._open_refinement_folder(self.refinement_folder)
self.sig_show_overview_plot.emit()
def _open_refinement_folder(self, path):
"""
Reads the refinement folder, setup the folder daemon and signals
:param path: Path to refinement folder
"""
if path != '':
#for i in reversed(range(self.root.childCount())):
# self.root.removeChild(self.root.child(i))
name = os.path.basename(path)
qname = QString(name)
root = QtGui.QTreeWidgetItem([str(path)])
self.root_items_path_dictionary[str(path)] = root
self.tree.addTopLevelItem(root)
fm = QFontMetrics(self.font)
w = fm.width(path)
self.tree.setMinimumWidth(w + 150)
#self.root.setText(0, qname)
self.reader.sig_readfolders.emit(path)
self.monitor = MonitorRefinementFolder(path, self.sig_update_tree,
self)
self.timer = QTimer(self)
self.timer.timeout.connect(self.monitor.update)
self.timer.start(2000)
def closeEvent(self, close_event):
'''
Closes all threads.
'''
for thr in self.thread_list:
thr.quit()
thr.wait()
@pyqtSlot(object)
def fill_tree(self, path_to_refinement_folder):
'''
Reads all runs in path_to_refinement_folder and add them as child to the corresponding root element in the tree
:param path_to_refinement_folder: Path to refinement folder
:return: none
'''
root = self.root_items_path_dictionary[str(path_to_refinement_folder)]
root.setCheckState(0, QtCore.Qt.Unchecked)
main_dicts = DriverFileReader.read_refinement_folders(
path_to_refinement_folder)
for dictionary in main_dicts:
next_item = QtGui.QTreeWidgetItem([dictionary])
next_item.setCheckState(0, QtCore.Qt.Unchecked)
root.addChild(next_item)
def close_application(self):
'''
Close the application
:return: none
'''
sys.exit()
class AddToProject(QDialog):
def __init__(self, pathProjects, parent=None):
#pathProjects must be a list
QDialog.__init__(self, parent)
self.setWindowTitle(self.tr("Add File to Project"))
self.pathSelected = ''
vbox = QVBoxLayout(self)
self._tree = QTreeWidget()
self._tree.header().setHidden(True)
self._tree.setSelectionMode(QTreeWidget.SingleSelection)
self._tree.setAnimated(True)
vbox.addWidget(self._tree)
hbox = QHBoxLayout()
btnAdd = QPushButton(self.tr("Add here!"))
btnCancel = QPushButton(self.tr("Cancel"))
hbox.addWidget(btnCancel)
hbox.addWidget(btnAdd)
vbox.addLayout(hbox)
#load folders
self._root = None
self._loading_items = {}
self.loading_projects(pathProjects)
self._thread_execution = ThreadExecution(
self._thread_load_projects, args=[pathProjects])
self.connect(self._thread_execution,
SIGNAL("finished()"), self._callback_load_project)
self._thread_execution.start()
self.connect(btnCancel, SIGNAL("clicked()"), self.close)
self.connect(btnAdd, SIGNAL("clicked()"), self._select_path)
def loading_projects(self, projects):
for project in projects:
loadingItem = LoadingItem()
item = loadingItem.add_item_to_tree(project, self._tree,
parent=self)
self._loading_items[project] = item
def _thread_load_projects(self, projects):
structures = []
for pathProject in projects:
folderStructure = file_manager.open_project(pathProject)
structures.append((folderStructure, pathProject))
self._thread_execution.storage_values = structures
def _callback_load_project(self):
structures = self._thread_execution.storage_values
if structures:
for structure, path in structures:
item = self._loading_items.pop(path, None)
if item is not None:
index = self._tree.indexOfTopLevelItem(item)
self._tree.takeTopLevelItem(index)
self._load_project(structure, path)
def _select_path(self):
item = self._tree.currentItem()
if item:
self.pathSelected = item.toolTip(0)
self.close()
def _load_project(self, folderStructure, folder):
if not folder:
return
name = file_manager.get_basename(folder)
item = QTreeWidgetItem(self._tree)
item.setText(0, name)
item.setToolTip(0, folder)
item.setIcon(0, QIcon(resources.IMAGES['tree-folder']))
if folderStructure[folder][1] is not None:
folderStructure[folder][1].sort()
self._load_folder(folderStructure, folder, item)
item.setExpanded(True)
self._root = item
def _load_folder(self, folderStructure, folder, parentItem):
items = folderStructure[folder]
if items[1] is not None:
items[1].sort()
for _file in items[1]:
if _file.startswith('.'):
continue
subfolder = QTreeWidgetItem(parentItem)
subfolder.setText(0, _file)
subfolder.setToolTip(0, os.path.join(folder, _file))
subfolder.setIcon(0, QIcon(resources.IMAGES['tree-folder']))
self._load_folder(folderStructure,
os.path.join(folder, _file), subfolder)
class AddToProject(QDialog):
def __init__(self, pathProjects, parent=None):
#pathProjects must be a list
QDialog.__init__(self, parent)
self.setWindowTitle(self.tr("Add File to Project"))
self.pathSelected = ''
vbox = QVBoxLayout(self)
self._tree = QTreeWidget()
self._tree.header().setHidden(True)
self._tree.setSelectionMode(QTreeWidget.SingleSelection)
self._tree.setAnimated(True)
vbox.addWidget(self._tree)
hbox = QHBoxLayout()
btnAdd = QPushButton(self.tr("Add here!"))
btnCancel = QPushButton(self.tr("Cancel"))
hbox.addWidget(btnCancel)
hbox.addWidget(btnAdd)
vbox.addLayout(hbox)
#load folders
self._root = None
self._loading_items = {}
self.loading_projects(pathProjects)
self._thread_execution = ThreadExecution(self._thread_load_projects,
args=[pathProjects])
self.connect(self._thread_execution, SIGNAL("finished()"),
self._callback_load_project)
self._thread_execution.start()
self.connect(btnCancel, SIGNAL("clicked()"), self.close)
self.connect(btnAdd, SIGNAL("clicked()"), self._select_path)
def loading_projects(self, projects):
for project in projects:
loadingItem = LoadingItem()
item = loadingItem.add_item_to_tree(project,
self._tree,
parent=self)
self._loading_items[project] = item
def _thread_load_projects(self, projects):
structures = []
for pathProject in projects:
folderStructure = file_manager.open_project(pathProject)
structures.append((folderStructure, pathProject))
self._thread_execution.storage_values = structures
def _callback_load_project(self):
structures = self._thread_execution.storage_values
for structure, path in structures:
item = self._loading_items.pop(path, None)
if item is not None:
index = self._tree.indexOfTopLevelItem(item)
self._tree.takeTopLevelItem(index)
self._load_project(structure, path)
def _select_path(self):
item = self._tree.currentItem()
if item:
self.pathSelected = item.toolTip(0)
self.close()
def _load_project(self, folderStructure, folder):
if not folder:
return
name = file_manager.get_basename(folder)
item = QTreeWidgetItem(self._tree)
item.setText(0, name)
item.setToolTip(0, folder)
item.setIcon(0, QIcon(resources.IMAGES['tree-folder']))
if folderStructure[folder][1] is not None:
folderStructure[folder][1].sort()
self._load_folder(folderStructure, folder, item)
item.setExpanded(True)
self._root = item
def _load_folder(self, folderStructure, folder, parentItem):
items = folderStructure[folder]
if items[1] is not None:
items[1].sort()
for _file in items[1]:
if _file.startswith('.'):
continue
subfolder = QTreeWidgetItem(parentItem)
subfolder.setText(0, _file)
subfolder.setToolTip(0, os.path.join(folder, _file))
subfolder.setIcon(0, QIcon(resources.IMAGES['tree-folder']))
self._load_folder(folderStructure, os.path.join(folder, _file),
subfolder)
class LibrarySearchDialog(QtGui.QDialog):
def __init__(self, ms, parent=None):
QtGui.QDialog.__init__(self, parent)
settings = QSettings()
size = settings.value("MainWindow/Size",
QVariant(QSize(1024, 600))).toSize()
self.resize(size)
self.setWindowTitle(
'Identify unknown compound by mass spectra Library')
self.ms = ms
pms = processMS(ms)
self.axis = pms[0]
self.mass = pms[1]
self.peak_MS = pms[2]
self.maxmass = int(self.axis[-1])
self.initControls()
self.initPlots()
self.selectedIndex = []
self.percent = []
self._cpointsPicker1 = Qwt.QwtPicker(self.plot1.canvas())
self._cpointsPicker1.setSelectionFlags(Qwt.QwtPicker.PointSelection)
self._cpointsPicker1.widgetMouseDoubleClickEvent = self.plot1MouseDoubleClickEvent
def updatePlots(self):
reply = QtGui.QMessageBox.question(
self, 'EleComp Parameters',
"Are you sure to Use Single Mass %s?" % self.selected_mz,
QtGui.QMessageBox.Yes, QtGui.QMessageBox.No)
if reply == QtGui.QMessageBox.Yes:
# print self.x
self.ElemCompDialog1()
# self.m.setLabel(self.text1)
# self.m.setValue(self.x, 0.0)
# rowMs=int((self.x-self.scan_acquisition_time.data[0])/0.2)
# self.showMs(rowMs)
# self.plot1.replot()
def plot1MouseDoubleClickEvent(self, event):
self.xp = self.plot1.invTransform(Qwt.QwtPlot.xBottom, event.x())
n1 = np.searchsorted(self.axis, self.xp - 1)
n2 = np.searchsorted(self.axis, self.xp + 1)
self.selected_mz = self.axis[np.argmax(self.mass[n1:n2]) + n1]
print self.xp
print self.selected_mz
self.updatePlots()
def ElemCompDialog1(self):
dialog = ElemCompDialog(mz=self.axis,
mass=self.mass,
xp=self.selected_mz)
dialog.move(QPoint(100, 10))
res = dialog.exec_()
def initControls(self):
self.plot3 = Qwt.QwtPlot(self)
self.plot3.setCanvasBackground(Qt.white)
self.plot3.enableAxis(Qwt.QwtPlot.yLeft, False)
self.plot3.enableAxis(Qwt.QwtPlot.xBottom, False)
self.plot1 = Qwt.QwtPlot(self)
self.plot1.setCanvasBackground(Qt.white)
self.plot2 = Qwt.QwtPlot(self)
self.plot2.setCanvasBackground(Qt.white)
library_label = QLabel("MS in mass spectra Library:")
self.library_list = QTreeWidget()
self.library_list.setColumnCount(3)
self.library_list.setHeaderLabels(
['No.', 'Similarity', 'Mol Wt', 'Formula', 'Name'])
self.library_list.setSortingEnabled(False)
self.connect(self.library_list, SIGNAL("itemSelectionChanged()"),
self.libraryListClicked)
self.connect(self.library_list,
SIGNAL("itemActivated (QTreeWidgetItem *,int)"),
self.libraryListDoubleClicked)
mxiture_label = QLabel("Molecular structure :")
# self.mixture_list = QListWidget()
okButton = QPushButton("&Search")
self.connect(okButton, SIGNAL("clicked()"), self.Seach)
left_vbox = QVBoxLayout()
left_vbox.addWidget(self.plot1)
left_vbox.addWidget(self.plot2)
right_vbox = QVBoxLayout()
right_vbox.addWidget(library_label)
right_vbox.addWidget(self.library_list)
hboxPercent = QHBoxLayout()
# hboxPercent.addWidget(percent_label)
# hboxPercent.addWidget(self.edit_percent)
right_vbox.addLayout(hboxPercent)
# right_vbox.addWidget(self.add_button)
right_vbox.addWidget(mxiture_label)
right_vbox.addWidget(self.plot3)
right_vbox.addWidget(okButton)
hbox = QHBoxLayout()
hbox.addLayout(left_vbox, 2.5)
hbox.addLayout(right_vbox, 1.5)
self.setLayout(hbox)
#self.setCentralWidget(self.main_frame)
def initPlots(self):
self.plot3.clear()
self.plot3.setAxisScale(self.plot1.xBottom, -4, 4)
self.plot3.setAxisScale(self.plot1.yLeft, -4, 4)
self.plot1.clear()
self.plot1.setTitle("Search MS")
self.plot1.setAxisTitle(Qwt.QwtPlot.yLeft, 'Intensity')
grid = Qwt.QwtPlotGrid()
pen = QPen(Qt.DotLine)
pen.setColor(Qt.black)
pen.setWidth(0)
grid.setPen(pen)
grid.attach(self.plot1)
self.plot1.setAxisScale(self.plot1.yLeft, 0, 1.1 * np.max(self.mass))
color = QColor('black')
curve = Qwt.QwtPlotCurve("test1")
pen = QPen(color)
pen.setWidth(1)
curve.setPen(pen)
#self.axis= np.arange(len(self.mass))
curve.setData(self.axis, self.mass)
curve.setStyle(Qwt.QwtPlotCurve.Sticks)
curve.attach(self.plot1)
for i in range(len(self.peak_MS)):
text_MS = Qwt.QwtText('%s' % (str(self.peak_MS[i][0])))
marker_MS = Qwt.QwtPlotMarker()
marker_MS.setLabelAlignment(Qt.AlignCenter | Qt.AlignTop)
marker_MS.setLabel(text_MS)
marker_MS.setValue(self.peak_MS[i][0], self.peak_MS[i][1])
marker_MS.attach(self.plot1)
self.plot1.replot()
self.plot2.clear()
self.plot2.setTitle("NIST MS")
# self.plot2.setAxisTitle(Qwt.QwtPlot.xBottom, 'Raman shift (cm-1)')
self.plot2.setAxisTitle(Qwt.QwtPlot.yLeft, 'Intensity')
grid = Qwt.QwtPlotGrid()
pen = QPen(Qt.DotLine)
pen.setColor(Qt.black)
pen.setWidth(0)
grid.setPen(pen)
grid.attach(self.plot2)
self.plot2.replot()
def libraryListClicked(self):
row = self.library_list.indexOfTopLevelItem(
self.library_list.currentItem())
self.row1 = self.masscor[row][0]
print 'row: %s' % self.row1
self.showMs(self.row1)
def libraryListDoubleClicked(self, item, pos):
dialog = NistLibraryDialog(num=self.row1)
dialog.move(QPoint(100, 10))
res = dialog.exec_()
def showMs(self, row1):
self.row1 = row1
self.cur.execute(
"select name,peakindex,peakintensity from catalog where id=%d" %
row1)
temp = self.cur.fetchall()
masstemp = np.frombuffer(temp[0][1], dtype=np.int)
intensitytemp = np.frombuffer(temp[0][2], dtype=np.int)
intensitytemp = 100 * intensitytemp / np.max(intensitytemp)
row = np.zeros(len(masstemp))
mass = coo_matrix((intensitytemp, (row, masstemp)),
shape=(1, ceil(masstemp[-1]) + 1)).todense()
self.massSeacher = mass.tolist()
radio_MS = 0.01 * (np.max(self.massSeacher[0]) -
np.min(self.massSeacher[0]))
peak_MS = []
for i in range(5, len(self.massSeacher[0]) - 5):
if (self.massSeacher[0][i] == max(self.massSeacher[0][i - 5:i + 5])
and self.massSeacher[0][i] >= radio_MS):
peak_intensity_MS = (i, self.massSeacher[0][i])
peak_MS.append(peak_intensity_MS)
self.plot2.clear()
self.plot2.setTitle("MS of %s" % str(temp[0][0][:-2]))
color = QColor('black')
curve2 = Qwt.QwtPlotCurve("test1")
pen = QPen(color)
pen.setWidth(1)
curve2.setPen(pen)
self.axis2 = masstemp
curve2.setData(masstemp, intensitytemp)
curve2.setStyle(Qwt.QwtPlotCurve.Sticks)
curve2.attach(self.plot2)
for i in range(len(peak_MS)):
text_MS = Qwt.QwtText('%s' % (str(peak_MS[i][0])))
marker_MS = Qwt.QwtPlotMarker()
marker_MS.setLabelAlignment(Qt.AlignCenter | Qt.AlignTop)
marker_MS.setLabel(text_MS)
marker_MS.setValue(peak_MS[i][0], peak_MS[i][1])
marker_MS.attach(self.plot2)
x = np.hstack((self.axis, self.axis2))
x_min = np.min(x)
x_max = np.max(x)
y1_max = np.max(self.mass)
y1_min = np.min(self.mass)
y2_max = np.max(intensitytemp)
y2_min = np.min(intensitytemp)
self.plot1.setAxisScale(self.plot1.xBottom, 0, x_max * 1.1)
self.plot2.setAxisScale(self.plot1.xBottom, 0, x_max * 1.1)
self.plot1.setAxisScale(self.plot1.yLeft, 0, y1_max * 1.1)
self.plot2.setAxisScale(self.plot1.yLeft, 0, y2_max * 1.1)
self.plot1.replot()
self.plot2.replot()
self.ShowMolFile()
def comnum(self):
i = 0
for x in self.findms:
if x in self.basems:
i = i + 1
cor = i * 2.0 / (len(self.findms) + len(self.basems))
return cor
def Seach_ZDJ(self):
self.findms = []
(mz_bin, val_bin, peaks_bin) = processMS(binMS(self.ms))
peaks_bin.sort(key=lambda d: d[1], reverse=True)
self.peak_index = []
self.peak_inten = []
for i in range(0, len(peaks_bin)):
self.peak_index.append(int(peaks_bin[i][0]))
self.peak_inten.append(peaks_bin[i][1])
if len(peaks_bin) < 10:
self.findms = self.peak_index
else:
self.findms = self.peak_index[0:10]
time0 = time.time()
db = sqlite3.connect(NIST_DBPath)
self.cur = db.cursor()
self.cur.execute(
"select id,top10peakindex from catalog where MW>%d-28 and MW<%d+28"
% (self.maxmass, self.maxmass))
self.c = self.cur.fetchall()
ms = []
for i in range(len(self.c)):
self.basems = np.frombuffer(self.c[i][1], dtype=np.int)
cor = self.comnum()
if cor > 0.4:
temp = (self.c[i][0], cor)
ms.append(temp)
print ms
self.masscor = []
tic = time.time()
for i in range(len(ms)):
self.cur.execute(
"select peakindex, peakintensity from catalog where id=%d" %
(ms[i][0]))
temp = self.cur.fetchall()
masstemp = np.frombuffer(temp[0][0], dtype=np.int)
intensitytemp = np.frombuffer(temp[0][1], dtype=np.int)
temp2 = (ms[i][0],
corrcoef_ms(masstemp, intensitytemp, mz_bin, val_bin))
self.masscor.append(temp2)
print time.time() - time0
print time.time() - tic
self.masscor.sort(key=lambda d: d[1], reverse=True)
for i in range(min(25, len(ms))):
self.cur.execute(
"select name,Formula,MW from catalog where id=%d" %
self.masscor[i][0])
temp = self.cur.fetchall()
strsimilarity = '%.2f' % self.masscor[i][1]
temp3 = temp[0][1][:-1]
temp1 = temp[0][2]
temp2 = temp[0][0][:-2]
item = QTreeWidgetItem([
str(i + 1),
str(strsimilarity),
str(temp1),
str(temp3),
str(temp2)
])
self.library_list.addTopLevelItem(item)
if len(ms) > 0:
self.showMs(self.masscor[0][0])
zoomer = Qwt.QwtPlotZoomer(Qwt.QwtPlot.xBottom, Qwt.QwtPlot.yLeft,
Qwt.QwtPicker.DragSelection,
Qwt.QwtPicker.AlwaysOn, self.plot1.canvas())
zoomer.setRubberBandPen(QPen(Qt.black))
zoomer.setTrackerPen(QPen(Qt.blue))
self.plot1.zoomer = zoomer
self.plot1.zoomer.setZoomBase()
def Seach(self):
ms = self.ms
nist = NISTSearch(NIST_DBPath)
nist.top10_screen(self.ms)
nist.corr()
self.masscor = nist.corrs
db = sqlite3.connect(NIST_DBPath)
self.cur = db.cursor()
for i in range(min(25, len(self.masscor))):
self.cur.execute(
"select name,Formula,MW from catalog where id=%d" %
self.masscor[i][0])
temp = self.cur.fetchall()
strsimilarity = '%.2f' % self.masscor[i][1]
temp3 = temp[0][1][:-1]
temp1 = temp[0][2]
temp2 = temp[0][0][:-2]
item = QTreeWidgetItem([
str(i + 1),
str(strsimilarity),
str(temp1),
str(temp3),
str(temp2)
])
self.library_list.addTopLevelItem(item)
if len(ms) > 0:
self.showMs(self.masscor[0][0])
zoomer = Qwt.QwtPlotZoomer(Qwt.QwtPlot.xBottom, Qwt.QwtPlot.yLeft,
Qwt.QwtPicker.DragSelection,
Qwt.QwtPicker.AlwaysOn, self.plot1.canvas())
zoomer.setRubberBandPen(QPen(Qt.black))
zoomer.setTrackerPen(QPen(Qt.blue))
self.plot1.zoomer = zoomer
self.plot1.zoomer.setZoomBase()
def ShowMolFile(self):
self.plot3.clear()
self.ID = self.row1
Molecular = {}
db = sqlite3.connect(MOL_DBPath)
cur = db.cursor()
cur.execute("select * from catalog where id=%d" % self.ID)
c = cur.fetchall()
Molecular["MolName"] = c[0][1]
Molecular["MolNum"] = c[0][2]
Molecular["MolBondNum"] = c[0][3]
Molecular["Mol"] = c[0][4].split()
Molecular["MolXAxis"] = np.frombuffer(c[0][5], dtype=np.float)
Molecular["MolYAxis"] = np.frombuffer(c[0][6], dtype=np.float)
Molecular["MolStyle"] = np.frombuffer(c[0][7], dtype=np.int)
Molecular["bondX"] = np.frombuffer(c[0][8], dtype=np.int)
Molecular["bondY"] = np.frombuffer(c[0][9], dtype=np.int)
Molecular["bondNum"] = np.frombuffer(c[0][10], dtype=np.int)
self.Molecular = Molecular
color = QColor('black')
curve = Qwt.QwtPlotCurve()
pen = QPen(color)
pen.setWidth(1)
curve.setPen(pen)
curve.setStyle(Qwt.QwtPlotCurve.NoCurve)
curve.setSymbol(
Qwt.QwtSymbol(Qwt.QwtSymbol.Ellipse, Qt.black, QPen(Qt.black),
QSize(3, 3)))
curve.attach(self.plot3)
curve.setData(self.Molecular["MolXAxis"], self.Molecular["MolYAxis"])
tempstyl1 = []
tempstyl2 = []
tempstyl3 = []
tempstyl4 = []
for i in range(Molecular["MolBondNum"]):
if Molecular["bondNum"][i] == 1 and Molecular["MolStyle"][
Molecular["bondX"][i] -
1] == 0 and Molecular["MolStyle"][Molecular["bondY"][i] -
1] == 0:
tempstyl2.append(Molecular["bondX"][i])
tempstyl2.append(Molecular["bondY"][i])
for i in range(Molecular["MolBondNum"]):
if Molecular["bondNum"][i] == 2 and Molecular["MolStyle"][
Molecular["bondX"][i] -
1] == 0 and Molecular["MolStyle"][Molecular["bondY"][i] -
1] == 0:
if (Molecular["bondX"][i]
in tempstyl2) and (Molecular["bondY"][i] in tempstyl2):
tempstyl1.append(Molecular["bondX"][i])
tempstyl1.append(Molecular["bondY"][i])
for i in range(len(tempstyl2) / 2):
if (tempstyl2[2 * i] in tempstyl1) and (tempstyl2[2 * i + 1]
in tempstyl1):
tempstyl3.append(tempstyl2[2 * i])
tempstyl3.append(tempstyl2[2 * i + 1])
for i in range(len(tempstyl1) / 2):
if (tempstyl1[2 * i] in tempstyl3) and (tempstyl1[2 * i + 1]
in tempstyl3):
tempstyl4.append(tempstyl1[2 * i])
tempstyl4.append(tempstyl1[2 * i + 1])
tempstyl6 = []
for i in range(len(tempstyl3) / 2):
if (tempstyl3[2 * i] in tempstyl4) and (tempstyl3[2 * i + 1]
in tempstyl4):
tempstyl6.append(tempstyl3[2 * i])
tempstyl6.append(tempstyl3[2 * i + 1])
tempstyl5 = []
# print tempstyl4
while True:
if len(tempstyl6) == 0 or len(tempstyl4) == 0:
break
for i in range(len(tempstyl4) / 2):
# print i
if not (tempstyl4[2 * i] in tempstyl5):
tempindex3 = tempstyl6.index(tempstyl4[2 * i])
tempindex4 = tempstyl6.index(tempstyl4[2 * i + 1])
temp1 = tempstyl4[2 * i]
temp2 = tempstyl4[2 * i + 1]
if tempindex3 % 2 == 0:
temp3 = tempstyl6[tempindex3 + 1]
tempindex3other = tempindex3 + 1
else:
temp3 = tempstyl6[tempindex3 - 1]
tempindex3other = tempindex3 - 1
if tempindex4 % 2 == 0:
temp4 = tempstyl6[tempindex4 + 1]
tempindex4other = tempindex4 + 1
else:
temp4 = tempstyl6[tempindex4 - 1]
tempindex4other = tempindex4 - 1
tempindex5 = tempstyl4.index(temp3)
tempindex6 = tempstyl4.index(temp4)
if tempindex5 % 2 == 0:
temp5 = tempstyl4[tempindex5 + 1]
else:
temp5 = tempstyl4[tempindex5 - 1]
if tempindex6 % 2 == 0:
temp6 = tempstyl4[tempindex6 + 1]
else:
temp6 = tempstyl4[tempindex6 - 1]
tempindex7 = tempstyl6.index(temp5)
if tempindex7 % 2 == 0:
temp7 = tempstyl6[tempindex7 + 1]
tempindex7other = tempindex7 + 1
else:
temp7 = tempstyl6[tempindex7 - 1]
tempindex7other = tempindex7 - 1
if temp7 == temp6:
if not ((temp1 in tempstyl5) and
(temp2 in tempstyl5) and
(temp3 in tempstyl5) and
(temp4 in tempstyl5) and
(temp5 in tempstyl5) and (temp6 in tempstyl5)):
tempstyl5.append(temp1)
tempstyl5.append(temp2)
tempstyl5.append(temp4)
tempstyl5.append(temp3)
tempstyl5.append(temp6)
tempstyl5.append(temp5)
temp = [
tempindex3, tempindex3other, tempindex4,
tempindex4other, tempindex7, tempindex7other
]
temp.sort(reverse=True)
del tempstyl6[temp[0]]
del tempstyl6[temp[1]]
del tempstyl6[temp[2]]
del tempstyl6[temp[3]]
del tempstyl6[temp[4]]
del tempstyl6[temp[5]]
for i in np.arange((len(tempstyl4) - 1) / 2, -1,
-1):
if not (tempstyl4[2 * i] in tempstyl6) or not (
tempstyl4[2 * i + 1] in tempstyl6):
del tempstyl4[2 * i + 1]
del tempstyl4[2 * i]
for i in np.arange((len(tempstyl6) - 1) / 2, -1,
-1):
if not (tempstyl6[2 * i] in tempstyl4) or not (
tempstyl6[2 * i + 1] in tempstyl4):
del tempstyl6[2 * i + 1]
del tempstyl6[2 * i]
for i in np.arange((len(tempstyl4) - 1) / 2, -1,
-1):
if not (tempstyl4[2 * i] in tempstyl6) or not (
tempstyl4[2 * i + 1] in tempstyl6):
del tempstyl4[2 * i + 1]
del tempstyl4[2 * i]
for i in np.arange((len(tempstyl6) - 1) / 2, -1,
-1):
if not (tempstyl6[2 * i] in tempstyl4) or not (
tempstyl6[2 * i + 1] in tempstyl4):
del tempstyl6[2 * i + 1]
del tempstyl6[2 * i]
break
# tempstylCom=list(set(tempstyl1) & set(tempstyl2))
# styl=np.setdiff1d(tempstyl1,tempstylCom)
for i in range(Molecular["MolBondNum"]):
x1 = self.Molecular["MolXAxis"][self.Molecular["bondX"][i] - 1]
x2 = self.Molecular["MolXAxis"][self.Molecular["bondY"][i] - 1]
y1 = self.Molecular["MolYAxis"][self.Molecular["bondX"][i] - 1]
y2 = self.Molecular["MolYAxis"][self.Molecular["bondY"][i] - 1]
if (y2 - y1) == 0:
Xdiff = 0
Ydiff = np.sqrt(0.003)
else:
h = (x2 - x1) / (y2 - y1)
Xdiff = np.sqrt(0.003 / (h * h + 1))
Ydiff = Xdiff * h
if (Molecular["bondNum"][i]
== 2) and not (Molecular["bondX"][i] in tempstyl5):
tempx1 = []
tempy1 = []
tempx2 = []
tempy2 = []
tempx1.append(x1 + Xdiff)
tempx1.append(x2 + Xdiff)
tempy1.append(y1 - Ydiff)
tempy1.append(y2 - Ydiff)
tempx2.append(x1 - Xdiff)
tempx2.append(x2 - Xdiff)
tempy2.append(y1 + Ydiff)
tempy2.append(y2 + Ydiff)
curve2 = Qwt.QwtPlotCurve()
curve2.setStyle(Qwt.QwtPlotCurve.Lines)
curve2.attach(self.plot3)
curve2.setData(tempx1, tempy1)
curve3 = Qwt.QwtPlotCurve()
curve3.setStyle(Qwt.QwtPlotCurve.Lines)
curve3.attach(self.plot3)
curve3.setData(tempx2, tempy2)
elif (Molecular["bondNum"][i] == 3):
tempx = []
tempy = []
tempx.append(x1)
tempx.append(x2)
tempy.append(y1)
tempy.append(y2)
curve1 = Qwt.QwtPlotCurve()
curve1.setStyle(Qwt.QwtPlotCurve.Lines)
curve1.attach(self.plot3)
curve1.setData(tempx, tempy)
tempx1 = []
tempy1 = []
tempx2 = []
tempy2 = []
tempx1.append(x1 + Xdiff)
tempx1.append(x2 + Xdiff)
tempy1.append(y1 - Ydiff)
tempy1.append(y2 - Ydiff)
tempx2.append(x1 - Xdiff)
tempx2.append(x2 - Xdiff)
tempy2.append(y1 + Ydiff)
tempy2.append(y2 + Ydiff)
curve2 = Qwt.QwtPlotCurve()
curve2.setStyle(Qwt.QwtPlotCurve.Lines)
curve2.attach(self.plot3)
curve2.setData(tempx1, tempy1)
curve3 = Qwt.QwtPlotCurve()
curve3.setStyle(Qwt.QwtPlotCurve.Lines)
curve3.attach(self.plot3)
curve3.setData(tempx2, tempy2)
else:
tempx = []
tempy = []
tempx.append(x1)
tempx.append(x2)
tempy.append(y1)
tempy.append(y2)
curve1 = Qwt.QwtPlotCurve()
curve1.setStyle(Qwt.QwtPlotCurve.Lines)
curve1.attach(self.plot3)
curve1.setData(tempx, tempy)
t = np.linspace(0, np.pi * 2, 100)
diffx1 = np.sin(t) * 0.3
diffy1 = np.cos(t) * 0.3
for i in range(len(tempstyl5) / 6):
x0 = 0
y0 = 0
diffx = []
diffy = []
x0 = Molecular["MolXAxis"][tempstyl5[
6 * i] - 1] + Molecular["MolXAxis"][tempstyl5[6 * i + 1] - 1]
x0 = x0 + Molecular["MolXAxis"][tempstyl5[6 * i + 2] -
1] + Molecular["MolXAxis"][
tempstyl5[6 * i + 3] - 1]
x0 = x0 + Molecular["MolXAxis"][tempstyl5[6 * i + 4] -
1] + Molecular["MolXAxis"][
tempstyl5[6 * i + 5] - 1]
x0 = x0 / 6
y0 = Molecular["MolYAxis"][tempstyl5[
6 * i] - 1] + Molecular["MolYAxis"][tempstyl5[6 * i + 1] - 1]
y0 = y0 + Molecular["MolYAxis"][tempstyl5[6 * i + 2] -
1] + Molecular["MolYAxis"][
tempstyl5[6 * i + 3] - 1]
y0 = y0 + Molecular["MolYAxis"][tempstyl5[6 * i + 4] -
1] + Molecular["MolYAxis"][
tempstyl5[6 * i + 5] - 1]
y0 = y0 / 6
for i in range(len(diffx1)):
diffx.append(diffx1[i] + x0)
diffy.append(diffy1[i] + y0)
curve4 = Qwt.QwtPlotCurve()
curve4.setStyle(Qwt.QwtPlotCurve.Lines)
curve4.attach(self.plot3)
curve4.setData(diffx, diffy)
for i in range(Molecular["MolNum"]):
if Molecular["MolStyle"][i] != 0:
text = Qwt.QwtText('%s' % Molecular["Mol"][i])
# text=Qwt.QwtText('%s'%str(i+1))
text.setColor(Qt.blue)
text.setFont(QFont("Sans", 12))
text.setBackgroundBrush(Qt.white)
marker = Qwt.QwtPlotMarker()
marker.setLabelAlignment(Qt.AlignCenter | Qt.AlignCenter)
marker.setLabel(text)
marker.setValue(self.Molecular["MolXAxis"][i],
self.Molecular["MolYAxis"][i])
marker.attach(self.plot3)
self.plot3.setAxisScale(self.plot3.xBottom,
min((min(Molecular["MolXAxis"]) - 0.5), -4),
max((max(Molecular["MolXAxis"]) + 0.5), 4))
self.plot3.setAxisScale(self.plot3.yLeft,
min((min(Molecular["MolYAxis"]) - 0.5), -4),
max((max(Molecular["MolYAxis"]) + 0.5), 4))
self.plot3.replot()
class EditorConfiguration(QWidget):
"""EditorConfiguration widget class"""
def __init__(self, parent):
super(EditorConfiguration, self).__init__()
self._preferences, vbox = parent, QVBoxLayout(self)
# groups
group1 = QGroupBox(translations.TR_PREFERENCES_EDITOR_CONFIG_INDENT)
group2 = QGroupBox(translations.TR_PREFERENCES_EDITOR_CONFIG_MARGIN)
group3 = QGroupBox(translations.TR_LINT_DIRTY_TEXT)
group4 = QGroupBox(translations.TR_PEP8_DIRTY_TEXT)
group5 = QGroupBox(translations.TR_HIGHLIGHTER_EXTRAS)
group6 = QGroupBox(translations.TR_TYPING_ASSISTANCE)
group7 = QGroupBox(translations.TR_DISPLAY)
# groups container
container_widget_with_all_preferences = QWidget()
formFeatures = QGridLayout(container_widget_with_all_preferences)
# Indentation
hboxg1 = QHBoxLayout(group1)
hboxg1.setContentsMargins(5, 15, 5, 5)
self._spin, self._checkUseTabs = QSpinBox(), QComboBox()
self._spin.setRange(1, 10)
self._spin.setValue(settings.INDENT)
hboxg1.addWidget(self._spin)
self._checkUseTabs.addItems([
translations.TR_PREFERENCES_EDITOR_CONFIG_SPACES.capitalize(),
translations.TR_PREFERENCES_EDITOR_CONFIG_TABS.capitalize()
])
self._checkUseTabs.setCurrentIndex(int(settings.USE_TABS))
hboxg1.addWidget(self._checkUseTabs)
formFeatures.addWidget(group1, 0, 0)
# Margin Line
hboxg2 = QHBoxLayout(group2)
hboxg2.setContentsMargins(5, 15, 5, 5)
self._checkShowMargin = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_MARGIN_LINE)
self._checkShowMargin.setChecked(settings.SHOW_MARGIN_LINE)
hboxg2.addWidget(self._checkShowMargin)
self._spinMargin = QSpinBox()
self._spinMargin.setRange(50, 100)
self._spinMargin.setSingleStep(2)
self._spinMargin.setValue(settings.MARGIN_LINE)
hboxg2.addWidget(self._spinMargin)
hboxg2.addWidget(QLabel(translations.TR_CHARACTERS))
formFeatures.addWidget(group2, 0, 1)
# Display Errors
vboxDisplay = QVBoxLayout(group7)
vboxDisplay.setContentsMargins(5, 15, 5, 5)
self._checkHighlightLine = QComboBox()
self._checkHighlightLine.addItems([
translations.TR_PREFERENCES_EDITOR_CONFIG_ERROR_USE_BACKGROUND,
translations.TR_PREFERENCES_EDITOR_CONFIG_ERROR_USE_UNDERLINE
])
self._checkHighlightLine.setCurrentIndex(
int(settings.UNDERLINE_NOT_BACKGROUND))
hboxDisplay1 = QHBoxLayout()
hboxDisplay1.addWidget(QLabel(translations.TR_DISPLAY_ERRORS))
hboxDisplay1.addWidget(self._checkHighlightLine)
hboxDisplay2 = QHBoxLayout()
self._checkDisplayLineNumbers = QCheckBox(
translations.TR_DISPLAY_LINE_NUMBERS)
self._checkDisplayLineNumbers.setChecked(settings.SHOW_LINE_NUMBERS)
hboxDisplay2.addWidget(self._checkDisplayLineNumbers)
vboxDisplay.addLayout(hboxDisplay1)
vboxDisplay.addLayout(hboxDisplay2)
formFeatures.addWidget(group7, 1, 0, 1, 0)
# Find Lint Errors (highlighter)
vboxg3 = QVBoxLayout(group3)
self._checkErrors = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_FIND_ERRORS)
self._checkErrors.setChecked(settings.FIND_ERRORS)
self.connect(self._checkErrors, SIGNAL("stateChanged(int)"),
self._disable_show_errors)
self._showErrorsOnLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TOOLTIP_ERRORS)
self._showErrorsOnLine.setChecked(settings.ERRORS_HIGHLIGHT_LINE)
self.connect(self._showErrorsOnLine, SIGNAL("stateChanged(int)"),
self._enable_errors_inline)
vboxg3.addWidget(self._checkErrors)
vboxg3.addWidget(self._showErrorsOnLine)
vboxg3.addItem(QSpacerItem(0, 0, QSizePolicy.Expanding))
formFeatures.addWidget(group3, 2, 0)
# Find PEP8 Errors (highlighter)
vboxg4 = QHBoxLayout(group4)
vboxg4.setContentsMargins(5, 15, 5, 5)
vvbox = QVBoxLayout()
self._checkStyle = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_PEP8)
self._checkStyle.setChecked(settings.CHECK_STYLE)
self.connect(self._checkStyle, SIGNAL("stateChanged(int)"),
self._disable_check_style)
vvbox.addWidget(self._checkStyle)
self._checkStyleOnLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TOOLTIP_PEP8)
self._checkStyleOnLine.setChecked(settings.CHECK_HIGHLIGHT_LINE)
self.connect(self._checkStyleOnLine, SIGNAL("stateChanged(int)"),
self._enable_check_inline)
vvbox.addWidget(self._checkStyleOnLine)
vvbox.addItem(
QSpacerItem(0, 0, QSizePolicy.Expanding, QSizePolicy.Expanding))
vboxg4.addLayout(vvbox)
# Container for tree widget and buttons
widget = QWidget()
hhbox = QHBoxLayout(widget)
hhbox.setContentsMargins(0, 0, 0, 0)
# Tree Widget with custom item delegate
# always adds uppercase text
self._listIgnoreViolations = QTreeWidget()
self._listIgnoreViolations.setObjectName("ignore_pep8")
self._listIgnoreViolations.setItemDelegate(ui_tools.CustomDelegate())
self._listIgnoreViolations.setMaximumHeight(80)
self._listIgnoreViolations.setHeaderLabel(
translations.TR_PREFERENCES_EDITOR_CONFIG_IGNORE_PEP8)
for ic in settings.IGNORE_PEP8_LIST:
self._listIgnoreViolations.addTopLevelItem(QTreeWidgetItem([ic]))
hhbox.addWidget(self._listIgnoreViolations)
box = QVBoxLayout()
box.setContentsMargins(0, 0, 0, 0)
btn_add = QPushButton(QIcon(":img/add_small"), '')
btn_add.setMaximumSize(26, 24)
btn_add.clicked.connect(self._add_code_pep8)
box.addWidget(btn_add)
btn_remove = QPushButton(QIcon(":img/delete_small"), '')
btn_remove.setMaximumSize(26, 24)
btn_remove.clicked.connect(self._remove_code_pep8)
box.addWidget(btn_remove)
box.addItem(QSpacerItem(0, 0, QSizePolicy.Fixed,
QSizePolicy.Expanding))
hhbox.addLayout(box)
vboxg4.addWidget(widget)
formFeatures.addWidget(group4)
# Show Python3 Migration, DocStrings and Spaces (highlighter)
vboxg5 = QVBoxLayout(group5)
vboxg5.setContentsMargins(5, 15, 5, 5)
self._showMigrationTips = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_MIGRATION)
self._showMigrationTips.setChecked(settings.SHOW_MIGRATION_TIPS)
vboxg5.addWidget(self._showMigrationTips)
self._checkForDocstrings = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_CHECK_FOR_DOCSTRINGS)
self._checkForDocstrings.setChecked(settings.CHECK_FOR_DOCSTRINGS)
vboxg5.addWidget(self._checkForDocstrings)
self._checkShowSpaces = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TABS_AND_SPACES)
self._checkShowSpaces.setChecked(settings.SHOW_TABS_AND_SPACES)
vboxg5.addWidget(self._checkShowSpaces)
self._checkIndentationGuide = QCheckBox(
translations.TR_SHOW_INDENTATION_GUIDE)
self._checkIndentationGuide.setChecked(settings.SHOW_INDENTATION_GUIDE)
vboxg5.addWidget(self._checkIndentationGuide)
formFeatures.addWidget(group5, 3, 0)
# End of line, Stop Scrolling At Last Line, Trailing space, Word wrap
vboxg6 = QVBoxLayout(group6)
vboxg6.setContentsMargins(5, 15, 5, 5)
self._checkEndOfLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_END_OF_LINE)
self._checkEndOfLine.setChecked(settings.USE_PLATFORM_END_OF_LINE)
vboxg6.addWidget(self._checkEndOfLine)
self._checkEndAtLastLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_END_AT_LAST_LINE)
self._checkEndAtLastLine.setChecked(settings.END_AT_LAST_LINE)
vboxg6.addWidget(self._checkEndAtLastLine)
self._checkTrailing = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_REMOVE_TRAILING)
self._checkTrailing.setChecked(settings.REMOVE_TRAILING_SPACES)
vboxg6.addWidget(self._checkTrailing)
self._allowWordWrap = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_WORD_WRAP)
self._allowWordWrap.setChecked(settings.ALLOW_WORD_WRAP)
vboxg6.addWidget(self._allowWordWrap)
formFeatures.addWidget(group6, 3, 1)
# pack all the groups
vbox.addWidget(container_widget_with_all_preferences)
vbox.addItem(
QSpacerItem(0, 10, QSizePolicy.Expanding, QSizePolicy.Expanding))
self.connect(self._preferences, SIGNAL("savePreferences()"), self.save)
def _add_code_pep8(self):
item = QTreeWidgetItem()
item.setFlags(item.flags() | Qt.ItemIsEditable)
self._listIgnoreViolations.addTopLevelItem(item)
self._listIgnoreViolations.setCurrentItem(item)
self._listIgnoreViolations.editItem(item, 0)
def _remove_code_pep8(self):
index = self._listIgnoreViolations.indexOfTopLevelItem(
self._listIgnoreViolations.currentItem())
self._listIgnoreViolations.takeTopLevelItem(index)
def _enable_check_inline(self, val):
"""Method that takes a value to enable the inline style checking"""
if val == Qt.Checked:
self._checkStyle.setChecked(True)
def _enable_errors_inline(self, val):
"""Method that takes a value to enable the inline errors checking"""
if val == Qt.Checked:
self._checkErrors.setChecked(True)
def _disable_check_style(self, val):
"""Method that takes a value to disable the inline style checking"""
if val == Qt.Unchecked:
self._checkStyleOnLine.setChecked(False)
def _disable_show_errors(self, val):
"""Method that takes a value to disable the inline errors checking"""
if val == Qt.Unchecked:
self._showErrorsOnLine.setChecked(False)
def save(self):
"""Method to save settings"""
qsettings = IDE.ninja_settings()
settings.USE_TABS = bool(self._checkUseTabs.currentIndex())
qsettings.setValue('preferences/editor/useTabs', settings.USE_TABS)
margin_line = self._spinMargin.value()
settings.MARGIN_LINE = margin_line
settings.pycodestylemod_update_margin_line_length(margin_line)
qsettings.setValue('preferences/editor/marginLine', margin_line)
settings.SHOW_MARGIN_LINE = self._checkShowMargin.isChecked()
qsettings.setValue('preferences/editor/showMarginLine',
settings.SHOW_MARGIN_LINE)
settings.INDENT = self._spin.value()
qsettings.setValue('preferences/editor/indent', settings.INDENT)
endOfLine = self._checkEndOfLine.isChecked()
settings.USE_PLATFORM_END_OF_LINE = endOfLine
qsettings.setValue('preferences/editor/platformEndOfLine', endOfLine)
settings.UNDERLINE_NOT_BACKGROUND = \
bool(self._checkHighlightLine.currentIndex())
qsettings.setValue('preferences/editor/errorsUnderlineBackground',
settings.UNDERLINE_NOT_BACKGROUND)
settings.FIND_ERRORS = self._checkErrors.isChecked()
qsettings.setValue('preferences/editor/errors', settings.FIND_ERRORS)
settings.ERRORS_HIGHLIGHT_LINE = self._showErrorsOnLine.isChecked()
qsettings.setValue('preferences/editor/errorsInLine',
settings.ERRORS_HIGHLIGHT_LINE)
settings.CHECK_STYLE = self._checkStyle.isChecked()
qsettings.setValue('preferences/editor/checkStyle',
settings.CHECK_STYLE)
settings.SHOW_MIGRATION_TIPS = self._showMigrationTips.isChecked()
qsettings.setValue('preferences/editor/showMigrationTips',
settings.SHOW_MIGRATION_TIPS)
settings.CHECK_HIGHLIGHT_LINE = self._checkStyleOnLine.isChecked()
qsettings.setValue('preferences/editor/checkStyleInline',
settings.CHECK_HIGHLIGHT_LINE)
settings.END_AT_LAST_LINE = self._checkEndAtLastLine.isChecked()
qsettings.setValue('preferences/editor/endAtLastLine',
settings.END_AT_LAST_LINE)
settings.REMOVE_TRAILING_SPACES = self._checkTrailing.isChecked()
qsettings.setValue('preferences/editor/removeTrailingSpaces',
settings.REMOVE_TRAILING_SPACES)
settings.ALLOW_WORD_WRAP = self._allowWordWrap.isChecked()
qsettings.setValue('preferences/editor/allowWordWrap',
settings.ALLOW_WORD_WRAP)
settings.SHOW_TABS_AND_SPACES = self._checkShowSpaces.isChecked()
qsettings.setValue('preferences/editor/showTabsAndSpaces',
settings.SHOW_TABS_AND_SPACES)
settings.SHOW_INDENTATION_GUIDE = (
self._checkIndentationGuide.isChecked())
qsettings.setValue('preferences/editor/showIndentationGuide',
settings.SHOW_INDENTATION_GUIDE)
settings.CHECK_FOR_DOCSTRINGS = self._checkForDocstrings.isChecked()
qsettings.setValue('preferences/editor/checkForDocstrings',
settings.CHECK_FOR_DOCSTRINGS)
settings.SHOW_LINE_NUMBERS = self._checkDisplayLineNumbers.isChecked()
qsettings.setValue('preferences/editor/showLineNumbers',
settings.SHOW_LINE_NUMBERS)
current_ignores = set(settings.IGNORE_PEP8_LIST)
new_ignore_codes = []
# Get pep8 from tree widget
for index in range(self._listIgnoreViolations.topLevelItemCount()):
ignore_code = self._listIgnoreViolations.topLevelItem(index).text(
0)
if ignore_code:
new_ignore_codes.append(ignore_code.strip())
# pep8 list that will be removed
to_remove = [x for x in current_ignores if x not in new_ignore_codes]
# Update list
settings.IGNORE_PEP8_LIST = new_ignore_codes
qsettings.setValue('preferences/editor/defaultIgnorePep8',
settings.IGNORE_PEP8_LIST)
# Add
for ignore_code in settings.IGNORE_PEP8_LIST:
settings.pycodestylemod_add_ignore(ignore_code)
# Remove
for ignore_code in to_remove:
settings.pycodestylemod_remove_ignore(ignore_code)
if settings.USE_TABS:
settings.pycodestylemod_add_ignore("W191")
else:
settings.pycodestylemod_remove_ignore("W191")
class EditorConfiguration(QWidget):
"""EditorConfiguration widget class"""
def __init__(self, parent):
super(EditorConfiguration, self).__init__()
self._preferences, vbox = parent, QVBoxLayout(self)
# groups
group1 = QGroupBox(translations.TR_PREFERENCES_EDITOR_CONFIG_INDENT)
group2 = QGroupBox(translations.TR_PREFERENCES_EDITOR_CONFIG_MARGIN)
group3 = QGroupBox(translations.TR_LINT_DIRTY_TEXT)
group4 = QGroupBox(translations.TR_PEP8_DIRTY_TEXT)
group5 = QGroupBox(translations.TR_HIGHLIGHTER_EXTRAS)
group6 = QGroupBox(translations.TR_TYPING_ASSISTANCE)
group7 = QGroupBox(translations.TR_DISPLAY)
# groups container
container_widget_with_all_preferences = QWidget()
formFeatures = QGridLayout(container_widget_with_all_preferences)
# Indentation
hboxg1 = QHBoxLayout(group1)
hboxg1.setContentsMargins(5, 15, 5, 5)
self._spin, self._checkUseTabs = QSpinBox(), QComboBox()
self._spin.setRange(1, 10)
self._spin.setValue(settings.INDENT)
hboxg1.addWidget(self._spin)
self._checkUseTabs.addItems([
translations.TR_PREFERENCES_EDITOR_CONFIG_SPACES.capitalize(),
translations.TR_PREFERENCES_EDITOR_CONFIG_TABS.capitalize()])
self._checkUseTabs.setCurrentIndex(int(settings.USE_TABS))
hboxg1.addWidget(self._checkUseTabs)
formFeatures.addWidget(group1, 0, 0)
# Margin Line
hboxg2 = QHBoxLayout(group2)
hboxg2.setContentsMargins(5, 15, 5, 5)
self._checkShowMargin = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_MARGIN_LINE)
self._checkShowMargin.setChecked(settings.SHOW_MARGIN_LINE)
hboxg2.addWidget(self._checkShowMargin)
self._spinMargin = QSpinBox()
self._spinMargin.setRange(50, 100)
self._spinMargin.setSingleStep(2)
self._spinMargin.setValue(settings.MARGIN_LINE)
hboxg2.addWidget(self._spinMargin)
hboxg2.addWidget(QLabel(translations.TR_CHARACTERS))
formFeatures.addWidget(group2, 0, 1)
# Display Errors
vboxDisplay = QVBoxLayout(group7)
vboxDisplay.setContentsMargins(5, 15, 5, 5)
self._checkHighlightLine = QComboBox()
self._checkHighlightLine.addItems([
translations.TR_PREFERENCES_EDITOR_CONFIG_ERROR_USE_BACKGROUND,
translations.TR_PREFERENCES_EDITOR_CONFIG_ERROR_USE_UNDERLINE])
self._checkHighlightLine.setCurrentIndex(
int(settings.UNDERLINE_NOT_BACKGROUND))
hboxDisplay1 = QHBoxLayout()
hboxDisplay1.addWidget(QLabel(translations.TR_DISPLAY_ERRORS))
hboxDisplay1.addWidget(self._checkHighlightLine)
hboxDisplay2 = QHBoxLayout()
self._checkDisplayLineNumbers = QCheckBox(
translations.TR_DISPLAY_LINE_NUMBERS)
self._checkDisplayLineNumbers.setChecked(settings.SHOW_LINE_NUMBERS)
hboxDisplay2.addWidget(self._checkDisplayLineNumbers)
vboxDisplay.addLayout(hboxDisplay1)
vboxDisplay.addLayout(hboxDisplay2)
formFeatures.addWidget(group7, 1, 0, 1, 0)
# Find Lint Errors (highlighter)
vboxg3 = QVBoxLayout(group3)
self._checkErrors = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_FIND_ERRORS)
self._checkErrors.setChecked(settings.FIND_ERRORS)
self.connect(self._checkErrors, SIGNAL("stateChanged(int)"),
self._disable_show_errors)
self._showErrorsOnLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TOOLTIP_ERRORS)
self._showErrorsOnLine.setChecked(settings.ERRORS_HIGHLIGHT_LINE)
self.connect(self._showErrorsOnLine, SIGNAL("stateChanged(int)"),
self._enable_errors_inline)
vboxg3.addWidget(self._checkErrors)
vboxg3.addWidget(self._showErrorsOnLine)
vboxg3.addItem(QSpacerItem(0, 0, QSizePolicy.Expanding))
formFeatures.addWidget(group3, 2, 0)
# Find PEP8 Errors (highlighter)
vboxg4 = QHBoxLayout(group4)
vboxg4.setContentsMargins(5, 15, 5, 5)
vvbox = QVBoxLayout()
self._checkStyle = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_PEP8)
self._checkStyle.setChecked(settings.CHECK_STYLE)
self.connect(self._checkStyle, SIGNAL("stateChanged(int)"),
self._disable_check_style)
vvbox.addWidget(self._checkStyle)
self._checkStyleOnLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TOOLTIP_PEP8)
self._checkStyleOnLine.setChecked(settings.CHECK_HIGHLIGHT_LINE)
self.connect(self._checkStyleOnLine, SIGNAL("stateChanged(int)"),
self._enable_check_inline)
vvbox.addWidget(self._checkStyleOnLine)
vvbox.addItem(QSpacerItem(0, 0,
QSizePolicy.Expanding, QSizePolicy.Expanding))
vboxg4.addLayout(vvbox)
# Container for tree widget and buttons
widget = QWidget()
hhbox = QHBoxLayout(widget)
hhbox.setContentsMargins(0, 0, 0, 0)
# Tree Widget with custom item delegate
# always adds uppercase text
self._listIgnoreViolations = QTreeWidget()
self._listIgnoreViolations.setObjectName("ignore_pep8")
self._listIgnoreViolations.setItemDelegate(ui_tools.CustomDelegate())
self._listIgnoreViolations.setMaximumHeight(80)
self._listIgnoreViolations.setHeaderLabel(
translations.TR_PREFERENCES_EDITOR_CONFIG_IGNORE_PEP8)
for ic in settings.IGNORE_PEP8_LIST:
self._listIgnoreViolations.addTopLevelItem(QTreeWidgetItem([ic]))
hhbox.addWidget(self._listIgnoreViolations)
box = QVBoxLayout()
box.setContentsMargins(0, 0, 0, 0)
btn_add = QPushButton(QIcon(":img/add_small"), '')
btn_add.setMaximumSize(26, 24)
btn_add.clicked.connect(self._add_code_pep8)
box.addWidget(btn_add)
btn_remove = QPushButton(QIcon(":img/delete_small"), '')
btn_remove.setMaximumSize(26, 24)
btn_remove.clicked.connect(self._remove_code_pep8)
box.addWidget(btn_remove)
box.addItem(QSpacerItem(0, 0,
QSizePolicy.Fixed, QSizePolicy.Expanding))
hhbox.addLayout(box)
vboxg4.addWidget(widget)
formFeatures.addWidget(group4)
# Show Python3 Migration, DocStrings and Spaces (highlighter)
vboxg5 = QVBoxLayout(group5)
vboxg5.setContentsMargins(5, 15, 5, 5)
self._showMigrationTips = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_MIGRATION)
self._showMigrationTips.setChecked(settings.SHOW_MIGRATION_TIPS)
vboxg5.addWidget(self._showMigrationTips)
self._checkForDocstrings = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_CHECK_FOR_DOCSTRINGS)
self._checkForDocstrings.setChecked(settings.CHECK_FOR_DOCSTRINGS)
vboxg5.addWidget(self._checkForDocstrings)
self._checkShowSpaces = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_SHOW_TABS_AND_SPACES)
self._checkShowSpaces.setChecked(settings.SHOW_TABS_AND_SPACES)
vboxg5.addWidget(self._checkShowSpaces)
self._checkIndentationGuide = QCheckBox(
translations.TR_SHOW_INDENTATION_GUIDE)
self._checkIndentationGuide.setChecked(settings.SHOW_INDENTATION_GUIDE)
vboxg5.addWidget(self._checkIndentationGuide)
formFeatures.addWidget(group5, 3, 0)
# End of line, Stop Scrolling At Last Line, Trailing space, Word wrap
vboxg6 = QVBoxLayout(group6)
vboxg6.setContentsMargins(5, 15, 5, 5)
self._checkEndOfLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_END_OF_LINE)
self._checkEndOfLine.setChecked(settings.USE_PLATFORM_END_OF_LINE)
vboxg6.addWidget(self._checkEndOfLine)
self._checkEndAtLastLine = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_END_AT_LAST_LINE)
self._checkEndAtLastLine.setChecked(settings.END_AT_LAST_LINE)
vboxg6.addWidget(self._checkEndAtLastLine)
self._checkTrailing = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_REMOVE_TRAILING)
self._checkTrailing.setChecked(settings.REMOVE_TRAILING_SPACES)
vboxg6.addWidget(self._checkTrailing)
self._allowWordWrap = QCheckBox(
translations.TR_PREFERENCES_EDITOR_CONFIG_WORD_WRAP)
self._allowWordWrap.setChecked(settings.ALLOW_WORD_WRAP)
vboxg6.addWidget(self._allowWordWrap)
formFeatures.addWidget(group6, 3, 1)
# pack all the groups
vbox.addWidget(container_widget_with_all_preferences)
vbox.addItem(QSpacerItem(0, 10, QSizePolicy.Expanding,
QSizePolicy.Expanding))
self.connect(self._preferences, SIGNAL("savePreferences()"), self.save)
def _add_code_pep8(self):
item = QTreeWidgetItem()
item.setFlags(item.flags() | Qt.ItemIsEditable)
self._listIgnoreViolations.addTopLevelItem(item)
self._listIgnoreViolations.setCurrentItem(item)
self._listIgnoreViolations.editItem(item, 0)
def _remove_code_pep8(self):
index = self._listIgnoreViolations.indexOfTopLevelItem(
self._listIgnoreViolations.currentItem())
self._listIgnoreViolations.takeTopLevelItem(index)
def _enable_check_inline(self, val):
"""Method that takes a value to enable the inline style checking"""
if val == Qt.Checked:
self._checkStyle.setChecked(True)
def _enable_errors_inline(self, val):
"""Method that takes a value to enable the inline errors checking"""
if val == Qt.Checked:
self._checkErrors.setChecked(True)
def _disable_check_style(self, val):
"""Method that takes a value to disable the inline style checking"""
if val == Qt.Unchecked:
self._checkStyleOnLine.setChecked(False)
def _disable_show_errors(self, val):
"""Method that takes a value to disable the inline errors checking"""
if val == Qt.Unchecked:
self._showErrorsOnLine.setChecked(False)
def save(self):
"""Method to save settings"""
qsettings = IDE.ninja_settings()
settings.USE_TABS = bool(self._checkUseTabs.currentIndex())
qsettings.setValue('preferences/editor/useTabs',
settings.USE_TABS)
margin_line = self._spinMargin.value()
settings.MARGIN_LINE = margin_line
settings.pycodestylemod_update_margin_line_length(margin_line)
qsettings.setValue('preferences/editor/marginLine', margin_line)
settings.SHOW_MARGIN_LINE = self._checkShowMargin.isChecked()
qsettings.setValue('preferences/editor/showMarginLine',
settings.SHOW_MARGIN_LINE)
settings.INDENT = self._spin.value()
qsettings.setValue('preferences/editor/indent', settings.INDENT)
endOfLine = self._checkEndOfLine.isChecked()
settings.USE_PLATFORM_END_OF_LINE = endOfLine
qsettings.setValue('preferences/editor/platformEndOfLine', endOfLine)
settings.UNDERLINE_NOT_BACKGROUND = \
bool(self._checkHighlightLine.currentIndex())
qsettings.setValue('preferences/editor/errorsUnderlineBackground',
settings.UNDERLINE_NOT_BACKGROUND)
settings.FIND_ERRORS = self._checkErrors.isChecked()
qsettings.setValue('preferences/editor/errors', settings.FIND_ERRORS)
settings.ERRORS_HIGHLIGHT_LINE = self._showErrorsOnLine.isChecked()
qsettings.setValue('preferences/editor/errorsInLine',
settings.ERRORS_HIGHLIGHT_LINE)
settings.CHECK_STYLE = self._checkStyle.isChecked()
qsettings.setValue('preferences/editor/checkStyle',
settings.CHECK_STYLE)
settings.SHOW_MIGRATION_TIPS = self._showMigrationTips.isChecked()
qsettings.setValue('preferences/editor/showMigrationTips',
settings.SHOW_MIGRATION_TIPS)
settings.CHECK_HIGHLIGHT_LINE = self._checkStyleOnLine.isChecked()
qsettings.setValue('preferences/editor/checkStyleInline',
settings.CHECK_HIGHLIGHT_LINE)
settings.END_AT_LAST_LINE = self._checkEndAtLastLine.isChecked()
qsettings.setValue('preferences/editor/endAtLastLine',
settings.END_AT_LAST_LINE)
settings.REMOVE_TRAILING_SPACES = self._checkTrailing.isChecked()
qsettings.setValue('preferences/editor/removeTrailingSpaces',
settings.REMOVE_TRAILING_SPACES)
settings.ALLOW_WORD_WRAP = self._allowWordWrap.isChecked()
qsettings.setValue('preferences/editor/allowWordWrap',
settings.ALLOW_WORD_WRAP)
settings.SHOW_TABS_AND_SPACES = self._checkShowSpaces.isChecked()
qsettings.setValue('preferences/editor/showTabsAndSpaces',
settings.SHOW_TABS_AND_SPACES)
settings.SHOW_INDENTATION_GUIDE = (
self._checkIndentationGuide.isChecked())
qsettings.setValue('preferences/editor/showIndentationGuide',
settings.SHOW_INDENTATION_GUIDE)
settings.CHECK_FOR_DOCSTRINGS = self._checkForDocstrings.isChecked()
qsettings.setValue('preferences/editor/checkForDocstrings',
settings.CHECK_FOR_DOCSTRINGS)
settings.SHOW_LINE_NUMBERS = self._checkDisplayLineNumbers.isChecked()
qsettings.setValue('preferences/editor/showLineNumbers',
settings.SHOW_LINE_NUMBERS)
current_ignores = set(settings.IGNORE_PEP8_LIST)
new_ignore_codes = []
# Get pep8 from tree widget
for index in range(self._listIgnoreViolations.topLevelItemCount()):
ignore_code = self._listIgnoreViolations.topLevelItem(
index).text(0)
if ignore_code:
new_ignore_codes.append(ignore_code.strip())
# pep8 list that will be removed
to_remove = [x for x in current_ignores
if x not in new_ignore_codes]
# Update list
settings.IGNORE_PEP8_LIST = new_ignore_codes
qsettings.setValue('preferences/editor/defaultIgnorePep8',
settings.IGNORE_PEP8_LIST)
# Add
for ignore_code in settings.IGNORE_PEP8_LIST:
settings.pycodestylemod_add_ignore(ignore_code)
# Remove
for ignore_code in to_remove:
settings.pycodestylemod_remove_ignore(ignore_code)
if settings.USE_TABS:
settings.pycodestylemod_add_ignore("W191")
else:
settings.pycodestylemod_remove_ignore("W191")
