def save_stylesheet(self):
try:
file_name = "%s.qss" % self.line_name.text()
if not self._is_valid_scheme_name(file_name):
QMessageBox.information(self,
translations.TR_PREFERENCES_THEME,
translations.TR_SCHEME_INVALID_NAME)
file_name = ('{0}.qss'.format(
file_manager.create_path(resources.NINJA_THEME_DOWNLOAD,
file_name)))
content = self.edit_qss.toPlainText()
answer = True
if file_manager.file_exists(file_name):
answer = QMessageBox.question(
self, translations.TR_PREFERENCES_THEME,
translations.TR_WANT_OVERWRITE_FILE +
": {0}?".format(file_name), QMessageBox.Yes,
QMessageBox.No)
if answer in (QMessageBox.Yes, True):
self.apply_stylesheet()
file_manager.store_file_content(file_name,
content,
newFile=True)
self.close()
except file_manager.NinjaFileExistsException as ex:
QMessageBox.information(
self, self.tr("File Already Exists"),
(self.tr("Invalid File Name: the file '%s' already exists.") %
ex.filename))
def save_scheme(self):
"""Save current scheme."""
name = self.line_name.text().strip()
if not self._is_valid_scheme_name(name):
QMessageBox.information(
self, translations.TR_PREFERENCES_EDITOR_SCHEME_DESIGNER,
translations.TR_SCHEME_INVALID_NAME)
return
fileName = ('{0}.color'.format(
file_manager.create_path(resources.EDITOR_SKINS, name)))
answer = True
if file_manager.file_exists(fileName):
answer = QMessageBox.question(
self, translations.TR_PREFERENCES_EDITOR_SCHEME_DESIGNER,
translations.TR_WANT_OVERWRITE_FILE +
": {0}?".format(fileName), QMessageBox.Yes, QMessageBox.No)
if answer in (QMessageBox.Yes, True):
scheme = self._preview_style()
self.original_style = copy.copy(scheme)
json_manager.save_editor_skins(fileName, scheme)
self._modified = False
self.saved = True
qsettings = IDE.ninja_settings()
qsettings.setValue('preferences/editor/scheme', name)
QMessageBox.information(
self, translations.TR_PREFERENCES_EDITOR_SCHEME_DESIGNER,
translations.TR_SCHEME_SAVED + ": {0}.".format(fileName))
self.close()
elif answer == QMessageBox.Yes:
QMessageBox.information(
self, translations.TR_PREFERENCES_EDITOR_SCHEME_DESIGNER,
translations.TR_INVALID_FILENAME)
def __evt_close_tab_click(self, index):
"""
because the first tab is the main window we'll show
so we never close it .
If the tab's content need save , we also remind the user.
"""
if 0 == index: return
if hasattr(self.widget(index),
"bufferon") and self.widget(index).bufferon():
reply = QMessageBox.question(
self, "Save or not?",
"Save your content first?\n%s" % self.tabText(index),
QMessageBox.Yes | QMessageBox.No | QMessageBox.Cancel)
if reply == QMessageBox.Yes:
if hasattr(self.widget(index), "save"):
self.widget(index).save()
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "yes"
elif reply == QMessageBox.No:
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "no"
elif reply == QMessageBox.Cancel:
return "cancel"
else:
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "yes"
def __evt_close_tab_click(self,index):
"""
because the first tab is the main window we'll show
so we never close it .
If the tab's content need save , we also remind the user.
"""
if 0 == index :return
if hasattr(self.widget(index),"bufferon") and self.widget(index).bufferon():
reply = QMessageBox.question(self, "Save or not?",
"Save your content first?\n%s" % self.tabText(index),
QMessageBox.Yes | QMessageBox.No | QMessageBox.Cancel)
if reply == QMessageBox.Yes:
if hasattr(self.widget(index),"save"):
self.widget(index).save()
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "yes"
elif reply == QMessageBox.No:
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "no"
elif reply == QMessageBox.Cancel:
return "cancel"
else:
self.removeTab(index)
Seeking().new().emit(SIGNAL('updateWindows()'))
return "yes"
def reject(self):
"""Reject this dialog."""
if self._modified:
answer = QMessageBox.No
answer = QMessageBox.question(
self, translations.TR_PREFERENCES_EDITOR_SCHEME_DESIGNER,
(translations.TR_IDE_CONFIRM_EXIT_TITLE + ".\n" +
translations.TR_PREFERENCES_GENERAL_CONFIRM_EXIT + "?"),
QMessageBox.Yes, QMessageBox.No)
if answer == QMessageBox.No:
return
super(EditorSchemeDesigner, self).reject()
def run(self):
print("RUN")
try:
warning = "" # initialise le nombre d'erreur
val = 0 # initialise le nombre d'erreur
txtInfo = ""
# import R's "base" package
base = importr('base')
with open("fonctions_apprentissage.r", "r", encoding="utf-8") as apprentissageRopen:
apprentissage = "".join(apprentissageRopen.readlines())
print(apprentissage)
apprentissage = SignatureTranslatedAnonymousPackage(apprentissage, "apprentissage")
#path_sample = "/media/sebastien/Bayer/ScriptsSEB/scripts/GUI/EBimage/AnalyseImagesV2/Samples/5583"
path_sample = "/".join(str(self.dicoFoldersCallibration["leaf"]).split("/")[:-1])
print(path_sample)
print(dir(apprentissage))
result , pathRdataFile= apprentissage.apprentissage(path_sample).r_repr().replace('"','').replace("c(","").replace(")","").split(",")
print(result, pathRdataFile)
if result == "1":
reply = QMessageBox.question(parent=self, title='Attention', text='File will be overwritten.\nDo you still want to proceed?', buttons=QMessageBox.Yes | QMessageBox.No, defaultButton=QMessageBox.No)
if reply == QMessageBox.Yes:
print("OK")
self.callibrationFileOpenLineEdit.setText(pathRdataFile)
else:
print("BAD")
##grise les boutons pour pas relancer job
#self.ui.frameRun.show()
#self.ui.runPushButton.setDisabled(True)
#self.ui.loadMatriceFilePushButton.setDisabled(True)
#self.ui.loadOrderFilePushButton.setDisabled(True)
#self.ui.PCAlineEdit.setDisabled(True)
#self.ui.DAlineEdit.setDisabled(True)
#self.ui.popMinLineEdit.setDisabled(True)
#self.ui.popMaxLineEdit.setDisabled(True)
#self.ui.rmOldCheckBox.setDisabled(True)
#self.ui.expertCheckBox.setDisabled(True)
#self.ui.expertFrame.setDisabled(True)
#self.ui.graphTypeComboBox.setDisabled(True)
#if self.expertMode == "True":
#self.EBimagefix = str(self.ui.EBimagefixPlainTextEdit.toPlainText().toUtf8())
#self.EBimagechange = str(self.ui.EBimagechangePlainTextEdit.toPlainText().toUtf8())
#"""to run programme"""
## création du pathout
#if os.path.isdir(self.pathFileOut):
#if self.rmOld == "True":
#shutil.rmtree(str(self.pathFileOut))
#os.mkdir(self.pathFileOut)
#else:
#warning += "Warnnig folder "+self.pathFileOut+" already exist,\nPlease remove/rename before run new analysis or use checkbox"
#raise Exception(warning)
#else:
#os.mkdir(self.pathFileOut)
################################################
## code commun mode graphique ou interface
################################################
## charge l'ordre a refaire
#self.orderList = loadInListCol(self.orderPathFile, 0)
## copie de la matrice dans un dico
#self.dicoMatrice = loadInDictLine(self.matricePathFile)
## Comptage du nombre d'individus, de markers et ncode:
#self.nbindParam = len(self.dicoMatrice.keys())-1
#if self.nbindParam != len(self.orderList):
#txtInfo += "WARNING: More individu in Matrice file (%s) than Order label file (%s)!!!\n" % (self.nbindParam, len(self.orderList))
#fileMat = open(self.matricePathFile,"r")
#header = fileMat.readline()
#self.nbmarkParam = len(header.split("\t"))
#header = " \t"+"\t".join(header.split("\t")[1:])
#nbcode = fileMat.readline().split("\t")[1]
#while nbcode == "-9":
#nbcode = fileMat.readline().split("\t")[1]
#self.ncodeParam = len(nbcode)
#fileMat.close()
## ouverture du nouveau fichier trier
#with open(self.pathFileOut+self.basename+"_Reorder.tab","w") as reorderMatriceFile:
#reorderMatriceFile.write(header)
#for ind in self.orderList:
#if ind not in self.dicoMatrice.keys():
#error = "ERROR: The individu %s define in label file was not in the matrice file !!! Exit programme" % ind
#raise Exception(error)
#line = self.dicoMatrice[ind].split("\t")[0]+"\t"+"\t".join(self.dicoMatrice[ind].split("\t")[1:]).replace("999","-9")
#reorderMatriceFile.write(line)
#txtInfo += "Nb individus: %i\tNb markers: %i\tncodeParam: %i\tGraph type: %s\n" % (self.nbindParam,int(self.nbmarkParam)-1,self.ncodeParam, self.graphType)
#if args.cmdMode:
#pass
#else:
#self.ui.runningPlainTextEdit.setPlainText(txtInfo)
##ouverture du script R
#Rscript = open(self.pathFileOut+self.basename+"_R_EBimage.R","w")
#Rscript.write(installPackageR)
## Ajout du path du fichier matrice dans EBimagefix
## modifie Script R pour adapter aux parametres rentrés
#dictToReplace = {
#"**MAKERS**" : str(self.nbmarkParam),
#"**NCODE**" : str(self.ncodeParam),
#"**INDIV**" : str(self.nbindParam),
#"**PATHTOFILE**": str(reorderMatriceFile.name),
#"**current_dir**" : str(self.pathFileOut),
#"**GRAPH**" : str(self.graphType)
#}
#EBimagefixModif = replace_all(dictToReplace, self.EBimagefix)
##print(EBimagefixModif)
#Rscript.write(EBimagefixModif)
#for pop in range(int(self.popMinValue),int(self.popMaxValue)+1):
##print(pop)
#popstr=str(pop)
#EBimagechange2 = self.EBimagechange.replace("**pop**",popstr).replace("**current_dir**",str(self.pathFileOut)).replace("**PCARETAIN**",str(self.PCAvalue)).replace("**DARETAIN**",str(self.DAvalue))
##print(EBimagechange2)
#Rscript.write(EBimagechange2)
#Rscript.close()
#self.ui.statusbar.showMessage(str("FINISH, script product on : %s" % self.pathFileOut),9600)
#txtInfo += "FINISH, script product on :\n %s" % (self.pathFileOut)
#if args.cmdMode:
#print(txtInfo)
#else:
#self.ui.runningPlainTextEdit.setPlainText(txtInfo)
## si des erreurs:
except Exception as e:
self.displayError(error = e)
def run(self):
print("RUN")
try:
warning = "" # initialise le nombre d'erreur
val = 0 # initialise le nombre d'erreur
txtInfo = ""
# import R's "base" package
base = importr('base')
with open("fonctions_apprentissage.r", "r",
encoding="utf-8") as apprentissageRopen:
apprentissage = "".join(apprentissageRopen.readlines())
print(apprentissage)
apprentissage = SignatureTranslatedAnonymousPackage(
apprentissage, "apprentissage")
#path_sample = "/media/sebastien/Bayer/ScriptsSEB/scripts/GUI/EBimage/AnalyseImagesV2/Samples/5583"
path_sample = "/".join(
str(self.dicoFoldersCallibration["leaf"]).split("/")[:-1])
print(path_sample)
print(dir(apprentissage))
result, pathRdataFile = apprentissage.apprentissage(
path_sample).r_repr().replace('"',
'').replace("c(", "").replace(
")", "").split(",")
print(result, pathRdataFile)
if result == "1":
reply = QMessageBox.question(
parent=self,
title='Attention',
text=
'File will be overwritten.\nDo you still want to proceed?',
buttons=QMessageBox.Yes | QMessageBox.No,
defaultButton=QMessageBox.No)
if reply == QMessageBox.Yes:
print("OK")
self.callibrationFileOpenLineEdit.setText(pathRdataFile)
else:
print("BAD")
##grise les boutons pour pas relancer job
#self.ui.frameRun.show()
#self.ui.runPushButton.setDisabled(True)
#self.ui.loadMatriceFilePushButton.setDisabled(True)
#self.ui.loadOrderFilePushButton.setDisabled(True)
#self.ui.PCAlineEdit.setDisabled(True)
#self.ui.DAlineEdit.setDisabled(True)
#self.ui.popMinLineEdit.setDisabled(True)
#self.ui.popMaxLineEdit.setDisabled(True)
#self.ui.rmOldCheckBox.setDisabled(True)
#self.ui.expertCheckBox.setDisabled(True)
#self.ui.expertFrame.setDisabled(True)
#self.ui.graphTypeComboBox.setDisabled(True)
#if self.expertMode == "True":
#self.EBimagefix = str(self.ui.EBimagefixPlainTextEdit.toPlainText().toUtf8())
#self.EBimagechange = str(self.ui.EBimagechangePlainTextEdit.toPlainText().toUtf8())
#"""to run programme"""
## création du pathout
#if os.path.isdir(self.pathFileOut):
#if self.rmOld == "True":
#shutil.rmtree(str(self.pathFileOut))
#os.mkdir(self.pathFileOut)
#else:
#warning += "Warnnig folder "+self.pathFileOut+" already exist,\nPlease remove/rename before run new analysis or use checkbox"
#raise Exception(warning)
#else:
#os.mkdir(self.pathFileOut)
################################################
## code commun mode graphique ou interface
################################################
## charge l'ordre a refaire
#self.orderList = loadInListCol(self.orderPathFile, 0)
## copie de la matrice dans un dico
#self.dicoMatrice = loadInDictLine(self.matricePathFile)
## Comptage du nombre d'individus, de markers et ncode:
#self.nbindParam = len(self.dicoMatrice.keys())-1
#if self.nbindParam != len(self.orderList):
#txtInfo += "WARNING: More individu in Matrice file (%s) than Order label file (%s)!!!\n" % (self.nbindParam, len(self.orderList))
#fileMat = open(self.matricePathFile,"r")
#header = fileMat.readline()
#self.nbmarkParam = len(header.split("\t"))
#header = " \t"+"\t".join(header.split("\t")[1:])
#nbcode = fileMat.readline().split("\t")[1]
#while nbcode == "-9":
#nbcode = fileMat.readline().split("\t")[1]
#self.ncodeParam = len(nbcode)
#fileMat.close()
## ouverture du nouveau fichier trier
#with open(self.pathFileOut+self.basename+"_Reorder.tab","w") as reorderMatriceFile:
#reorderMatriceFile.write(header)
#for ind in self.orderList:
#if ind not in self.dicoMatrice.keys():
#error = "ERROR: The individu %s define in label file was not in the matrice file !!! Exit programme" % ind
#raise Exception(error)
#line = self.dicoMatrice[ind].split("\t")[0]+"\t"+"\t".join(self.dicoMatrice[ind].split("\t")[1:]).replace("999","-9")
#reorderMatriceFile.write(line)
#txtInfo += "Nb individus: %i\tNb markers: %i\tncodeParam: %i\tGraph type: %s\n" % (self.nbindParam,int(self.nbmarkParam)-1,self.ncodeParam, self.graphType)
#if args.cmdMode:
#pass
#else:
#self.ui.runningPlainTextEdit.setPlainText(txtInfo)
##ouverture du script R
#Rscript = open(self.pathFileOut+self.basename+"_R_EBimage.R","w")
#Rscript.write(installPackageR)
## Ajout du path du fichier matrice dans EBimagefix
## modifie Script R pour adapter aux parametres rentrés
#dictToReplace = {
#"**MAKERS**" : str(self.nbmarkParam),
#"**NCODE**" : str(self.ncodeParam),
#"**INDIV**" : str(self.nbindParam),
#"**PATHTOFILE**": str(reorderMatriceFile.name),
#"**current_dir**" : str(self.pathFileOut),
#"**GRAPH**" : str(self.graphType)
#}
#EBimagefixModif = replace_all(dictToReplace, self.EBimagefix)
##print(EBimagefixModif)
#Rscript.write(EBimagefixModif)
#for pop in range(int(self.popMinValue),int(self.popMaxValue)+1):
##print(pop)
#popstr=str(pop)
#EBimagechange2 = self.EBimagechange.replace("**pop**",popstr).replace("**current_dir**",str(self.pathFileOut)).replace("**PCARETAIN**",str(self.PCAvalue)).replace("**DARETAIN**",str(self.DAvalue))
##print(EBimagechange2)
#Rscript.write(EBimagechange2)
#Rscript.close()
#self.ui.statusbar.showMessage(str("FINISH, script product on : %s" % self.pathFileOut),9600)
#txtInfo += "FINISH, script product on :\n %s" % (self.pathFileOut)
#if args.cmdMode:
#print(txtInfo)
#else:
#self.ui.runningPlainTextEdit.setPlainText(txtInfo)
## si des erreurs:
except Exception as e:
self.displayError(error=e)
