def _make_buffer(self, name, contents, empty_goto=True, switch=False,
window='other', modes=[], fit_lines=None):
"""Make an emacs buffer
`window` can be one of `None`, 'current' or 'other'.
"""
new_buffer = lisp.get_buffer_create(name)
lisp.set_buffer(new_buffer)
lisp.toggle_read_only(-1)
lisp.erase_buffer()
if contents or empty_goto:
lisp.insert(contents)
for mode in modes:
lisp[mode + '-mode']()
lisp.buffer_disable_undo(new_buffer)
lisp.toggle_read_only(1)
if switch:
if window == 'current':
lisp.switch_to_buffer(new_buffer)
else:
lisp.switch_to_buffer_other_window(new_buffer)
lisp.goto_char(lisp.point_min())
elif window == 'other':
new_window = lisp.display_buffer(new_buffer)
lisp.set_window_point(new_window, lisp.point_min())
if fit_lines and lisp.fboundp(lisp['fit-window-to-buffer']):
lisp.fit_window_to_buffer(new_window, fit_lines)
lisp.bury_buffer(new_buffer)
return new_buffer
def _make_buffer(self,
name,
contents,
empty_goto=True,
switch=False,
window='other',
modes=[],
fit_lines=None):
"""Make an emacs buffer
`window` can be one of `None`, 'current' or 'other'.
"""
new_buffer = lisp.get_buffer_create(name)
lisp.set_buffer(new_buffer)
lisp.toggle_read_only(-1)
lisp.erase_buffer()
if contents or empty_goto:
lisp.insert(contents)
for mode in modes:
lisp[mode + '-mode']()
lisp.buffer_disable_undo(new_buffer)
lisp.toggle_read_only(1)
if switch:
if window == 'current':
lisp.switch_to_buffer(new_buffer)
else:
lisp.switch_to_buffer_other_window(new_buffer)
lisp.goto_char(lisp.point_min())
elif window == 'other':
new_window = lisp.display_buffer(new_buffer)
lisp.set_window_point(new_window, lisp.point_min())
if fit_lines and lisp.fboundp(lisp['fit-window-to-buffer']):
lisp.fit_window_to_buffer(new_window, fit_lines)
lisp.bury_buffer(new_buffer)
return new_buffer
def occurrences_next(arg, reset):
lisp.switch_to_buffer_other_window('*rope-occurrences*', True)
if reset:
lisp.goto_char(lisp.point_min())
lisp.forward_line(arg)
if lisp.eobp():
lisp.message("Cycling rope occurences")
lisp.goto_char(lisp.point_min())
occurrences_goto()
def occurrences_next(arg, reset):
lisp.switch_to_buffer_other_window('*rope-occurrences*', True)
if reset:
lisp.goto_char(lisp.point_min())
lisp.forward_line(arg)
if lisp.eobp():
lisp.message("Cycling rope occurences")
lisp.goto_char(lisp.point_min())
occurrences_goto()
def get_text(self):
end = lisp.buffer_size() + 1
old_min = lisp.point_min()
old_max = lisp.point_max()
narrowed = (old_min != 1 or old_max != end)
if narrowed:
lisp.narrow_to_region(1, lisp.buffer_size() + 1)
try:
return lisp.buffer_string()
finally:
if narrowed:
lisp.narrow_to_region(old_min, old_max)
def get_text(self):
end = lisp.buffer_size() + 1
old_min = lisp.point_min()
old_max = lisp.point_max()
narrowed = (old_min != 1 or old_max != end)
if narrowed:
lisp.narrow_to_region(1, lisp.buffer_size() + 1)
try:
return lisp.buffer_string()
finally:
if narrowed:
lisp.narrow_to_region(old_min, old_max)
def _get_text(self):
if not lisp.buffer_modified_p():
return self._get_resource().read()
end = lisp.buffer_size() + 1
old_min = lisp.point_min()
old_max = lisp.point_max()
narrowed = (old_min != 1 or old_max != end)
if narrowed:
lisp.narrow_to_region(1, lisp.buffer_size() + 1)
try:
return lisp.buffer_string()
finally:
if narrowed:
lisp.narrow_to_region(old_min, old_max)
def pmfetch(pmid):
""" Fetch and insert a BibTeX reference for PubMed article w/ given PMID at beginning of buffer. """
try:
# Init vars
key = ''
author = ''
title = ''
journal = ''
year = ''
volume = ''
number = ''
pages = ''
month = ''
note = ''
abstract = ''
url = ''
# Format author
def format_author(author):
suffix = ''
if author[-2:] in ('Jr', 'Sr'):
suffix = author[-2:] + '.'
author = author[:-3]
elif author[-3:] in ('2nd', '3rd'):
suffix = author[-3:]
author = author[:-4]
author = split(author, maxsplit=-1)
last_name = author[0]
initials = author[1]
initials = list(initials)
if suffix:
initials.append(suffix)
else:
initials.append('')
return strip(last_name + ', ' + '. '.join(initials))
# Format and check pmid, and fetch article from PubMed
pmid = str(pmid).strip()
if not pmid.isdigit(): raise ValueError
pm = PubMed.Dictionary(parser=Medline.RecordParser())
article = pm[pmid] # Fetch article from PubMed
if not article or not article.pubmed_id == pmid: raise ValueError
if not article.title: raise ValueError
else: title = article.title
if not article.no_author and article.authors:
authors = [format_author(author) for author in article.authors]
author = ' and '.join(authors)
if not article.publication_date: raise ValueError
else: year = article.publication_date[:4]
if not article.title_abbreviation: raise ValueError
else: journal = article.title_abbreviation
if not article.volume_issue: raise ValueError
else: volume = article.volume_issue
if not article.pagination: raise ValueError
else: pages = article.pagination.replace('-','--')
if article.abstract: abstract = article.abstract
if article.issue_part_supplement: number = article.issue_part_supplement
# Create BibTeX ref
bib = """
@ARTICLE{%s,
pmid = {%s},
author = {%s},
title = {{%s}},
journal = {%s},
year = {%s},
volume = {%s},
number = {%s},
pages = {%s},
month = {%s},
abstract = {%s},
note = {%s},
url = {%s},
}
""" % (key,pmid,author,title,journal,year,volume,number,pages,month,abstract,note,url)
# Insert BibTeX ref
lisp.goto_char(lisp.point_min())
if lisp.re_search_forward(pmid,None,True,1):
lisp.message('Article with PMID = %s is already in buffer.' % pmid)
return
lisp.insert(bib)
lisp.bibtex_clean_entry()
lisp.bibtex_fill_entry()
return
except:
lisp.message('Unable to fetch article from PubMed. Check PMID and try again.')
return